Rh2DG069400

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002220
Physical Location & Seq
Forward (+)
5253421 .. 5253768
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG069400.1

Sequence Viewer

Length: 348 bp
ATGAAGATGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGATACCAACAACTCCACCACAATCACCACAAACAGTGCAGCAACAGAAGCAGCAAAGGGTTGATTCTTACGAAATTTTTCATCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGATTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGACGAAGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGTCATAGGATCGATGTGAAAACAGAAAAACCTAGCAAATTGTTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

115

Amino Acids

13.37

Weight (kDa)

5.6

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 59 - 100 4.3e-11 Ring finger domain
zf-RING_11 PF17123 59 - 88 7.9e-09 RING-like zinc finger
zf-RING_5 PF14634 59 - 101 1.9e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 60 - 99 1.9e-06 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 60 - 106 8.9e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 171, 290
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 248
AflII CTTAAG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 91, 103
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 69, 128, 283
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 103, 115
BfaI CTAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 92, 104
BlsI GCNGC 2 cut(s) 93, 105
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse118I RCCGGY 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 103, 115
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 48
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 2 cut(s) 171, 290
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 1 cut(s) 221
BspPI GGATC 1 cut(s) 314
BspTI CTTAAG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 88, 254
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 246
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 103, 115
BstV2I GAAGAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 35
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
CviQI GTAC 1 cut(s) 247
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 303
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 92, 104
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 92, 104
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 92, 104
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 116, 281
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 69, 128, 283
HpyCH4III ACNGT 2 cut(s) 88, 254
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 91, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 1 cut(s) 61
Lsp1109I GCAGC 2 cut(s) 103, 115
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 254
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 5 cut(s) 16, 38, 218, 224, 290
MluCI AATT 2 cut(s) 126, 335
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 306
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 116, 281
PkrI GCNGC 2 cut(s) 93, 105
Ppu21I YACGTR 1 cut(s) 246
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 92, 104
Sau3AI GATC 1 cut(s) 306
SetI ASST 4 cut(s) 157, 248, 273, 331
SfaNI GCATC 1 cut(s) 213
SgeI CNNG 9 cut(s) 26, 47, 60, 64, 232, 256, 266, 297, 342
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 126, 335
SsiI CCGC 2 cut(s) 171, 290
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 88, 254
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 309
TasI AATT 2 cut(s) 126, 335
TfiI GAWTC 2 cut(s) 116, 281
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 91, 103
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 17, 39, 122
TspRI CASTG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 227
XapI RAATTY 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.