FvH4_1g06590

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002220
Physical Location & Seq
Forward (+)
3472514 .. 3473186
673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06590.t1

Sequence Viewer

Length: 354 bp
ATGAAGACTTGCCTTGGAGTCGATGAAGAAATAGTCCATGATATTGAAAACGGCACGCTACCAACAGCAAATCCACCACAACCACAACAACAAGCAGCGGAGCAACAGAACCAGCAGAAGGCTAAAAGGGTTGAATCTTATGAAGTTTTTCGTCACCGAAAGGATGCTGAAGCAGTAGTTGGATTTCACAGCGGAGAGTGTGCTATTTGTTTGGGGGAGTATGAGGAAGACGATGAGTGTGTGATGCTTAAGAAATGTAAGCACACGTACCATCGTGAATGCATTGATAAGGTGGAACAAGATTCGTGTCCGGTTTGTCGTCATAGTATTGATGTGAAAATAGAAAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

5.19

Isoelectric Point (pI)

64.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 66 - 107 2.3e-11 Ring finger domain
zf-RING_11 PF17123 66 - 95 5.6e-09 RING-like zinc finger
zf-RING_5 PF14634 66 - 108 7.8e-08 zinc-RING finger domain
zf-C3HC4_2 PF13923 66 - 106 4.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 67 - 101 5.6e-06 RING-type zinc-finger
zf-C3HC4 PF00097 67 - 106 9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 98, 192
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 118
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 47, 134
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
ApeKI GCWGC 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 11, 234
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 279
BceAI ACGGC 1 cut(s) 67
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmsI GCATC 2 cut(s) 154, 234
BpiI GAAGAC 2 cut(s) 11, 234
BsaAI YACGTR 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 118
BsmI GAATGC 1 cut(s) 284
BspACI CCGC 2 cut(s) 98, 192
BspTI CTTAAG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 13
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 56
BstF5I GGATG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 2 cut(s) 11, 234
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 38
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
CviQI GTAC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 41
FaiI YATR 4 cut(s) 39, 141, 222, 324
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 311
Hin1II CATG 1 cut(s) 41
HinfI GANTC 3 cut(s) 18, 134, 302
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 125, 324
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 154, 234
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 3 cut(s) 16, 38, 239
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 217
Mph1103I ATGCAT 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 249, 352
MspA1I CMGCKG 2 cut(s) 98, 192
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 284
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 134, 302
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 267
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 249, 352
SatI GCNGC 1 cut(s) 96
SchI GAGTC 1 cut(s) 27
SetI ASST 2 cut(s) 269, 294
SfaNI GCATC 2 cut(s) 154, 234
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 2 cut(s) 98, 192
StyI CCWWGG 1 cut(s) 13
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 21
TfiI GAWTC 2 cut(s) 134, 302
Tru1I TTAA 2 cut(s) 249, 352
Tru9I TTAA 2 cut(s) 249, 352
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 17, 39, 156
Vha464I CTTAAG 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.