AT1G68980

pentatricopeptide

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
25932955 .. 25935030
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68980.1

Sequence Viewer

Length: 1860 bp
ATGTTGAGAAAGACTCTAACTTTAATCTCACTAAGAAGACCCTTCTCTTCAATTCCCTCTAAAACCCTAACCCCACACCAAAAGTCTTCCTTTGAATCAACTCTCCACCATTCCCTAATCACCCACGACACTGATCAAGCATGGAAGGTCTTCCGATCCTTCGCTGCCGCTTCTTCTCTCCCGGACAAGCGTCTCCTCAATTCTCTCATCACCCACTTGTCCTCCTTCCACAACACAGATCAAAACACCTCCCTCAGGCACAGACTCAAGCGTGCCTTTGTTTCCACGACTTATGTAATCGAGAAAGATCCGATTTTGCTTGAGTTTGAGACCGTCCGTACGGTTCTCGAGTCGATGAAACTAGCGAAAGCTTCCGGGCCAGCATTGGCTTTGGTGGAGTGTATGTTTAAAAACAGGTACTTTGTTCCTTTTGATCTCTGGGGGGATTTACTTATCGATGTCTGTCGTGAAAATGGAAGCTTGGCTGCGTTTCTTAAGGTGTTTAGGGAAAGTTGTAGAATTGCAGTAGATGAGAAGCTTGATTTTATGAAACCGGATTTGGTAGCGAGTAATGCAGCTCTTGAAGCGTGTTGTAGGCAGATGGAATCTTTGGCTGATGCTGAGAATCTGATTGAATCTATGGATGTTTTAGGTGTGAAGCCTGATGAATTGAGCTTTGGGTTTCTTGCTTATTTGTATGCGAGGAAGGGGCTTCGAGAGAAGATTAGTGAGCTTGAGGATTTGATGGATGGTTTAGGGTTTGCAAGTAGAAGAATTCTTTATTCCAGTATGATCAGTGGATATGTTAAGAGTGGTGATTTAGATAGTGCTTCTGATGTTATACTGTGTAGTCTTAAAGGAGTTGGAGAAGCCTCGAGTTTCAGTGAGGAAACGTACTGTGAATTGGTTAGAGGGTTCATAGAGAGTAAAAGCGTTGAGAGTTTAGCGAAACTGATCATCGAAGCTCAGAAGTTGGAATCTATGTCCACTGATGTTGGCGGATCAGTGGGGTTTGGAATCGTAAATGCTTGTGTCAAGCTCGGATTTTCGGGTAAAAGTATTCTCGATGAATTGAATGCTCAGGGAGGATCTGGAGGGATTGGTGTGTATGTGCCGATCTTGAAGGCTTATTGCAAAGAAGGCAGAACATCTGAAGCTACTCAGCTTGTTACAGAGATCAGCAGCTCTGGGCTTCAATTAGACGTTGAGACCTATAACACTATGATCGAAGCTTCCATGACGAAACATGATTTCCTATCTGCTCTTACATTGTTTAGGGATATGAGAGAAACAAGAGTGGCGGATCTGAAAAGATGCTACTTAACAATAATGACTGGTCTCCTTGAGAATCAGAGACCTGAGTTAATGGCAGAGTTTGTGGAGGAAGTTATGGAAGATCCACGCGTAGAAGTGAAGTCCCATGATTGGAATTCGATTATCCATGCCTTTTGTAAATCTGGTCGCCTAGGAGATGCAAAGAGTACATTCAGAAGGATGACTTTCCTTCAGTATGAGCCGAATAACCAGACATACTTGTCGTTGATCAATGGATACGTGAGCTGCGAGAAGTACTTCGAGGTGGTGGTTATATGGAAAGAGTTCAAAGACAAGAAAGCAAAACTGGAGCATGCTCTTGCGGATGCGTTCTTGAATGCATTGGTCAAAGGAGGCTTCTTTGGCACGGCGTTGCAAGTGATAGAGAAATGTCAGGAGATGAAGATATTCGTGGATAAGTGGAGGTATAAAGCAACGTTCATGGAGACTCAAAAGAATCTCAGATTGCCAAAGTTGAGGAAGAGGAAGATGAAGAAAATTGAGTTTCTTGATGCCTTTAAGAATTGGGCTCGTATTACCACATGA

Protein Analysis

619

Amino Acids

69.85

Weight (kDa)

7.85

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_At1g68980 PF25245 21 - 184 5.4e-64 At1g68980, TPR repeats
PPR_2 PF13041 372 - 411 3.4e-07 PPR repeat family
PPR_2 PF13041 476 - 519 8.9e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1534
AccII CGCG 1 cut(s) 1404
AciI CCGC 4 cut(s) 168, 999, 1301, 1637
AclI AACGTT 1 cut(s) 1751
AclWI GGATC 6 cut(s) 150, 302, 1009, 1096, 1311, 1391
AcsI RAATTY 2 cut(s) 774, 1429
AcuI CTGAAG 2 cut(s) 1173, 1490
AfaI GTAC 5 cut(s) 340, 419, 896, 1483, 1571
AfiI CCNNNNNNNGG 2 cut(s) 255, 1425
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 1402
AgsI TTSAA 9 cut(s) 51, 95, 584, 635, 1075, 1123, 1196, 1603, 1651
AjuI GAANNNNNNNTTGG 4 cut(s) 542, 574, 660, 692
Alw26I GTCTC 6 cut(s) 197, 323, 1202, 1343, 1348, 1754
AlwI GGATC 6 cut(s) 150, 302, 1009, 1096, 1311, 1391
Ama87I CYCGRG 2 cut(s) 347, 874
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 5 cut(s) 164, 485, 575, 1182, 1560
ApoI RAATTY 2 cut(s) 774, 1429
Asp700I GAANNNNTTC 4 cut(s) 149, 1571, 1598, 1721
AspA2I CCTAGG 1 cut(s) 1465
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 2 cut(s) 182, 376
AsuHPI GGTGA 3 cut(s) 112, 202, 827
AvaI CYCGRG 2 cut(s) 347, 874
AvrII CCTAGG 1 cut(s) 1465
AxyI CCTNAGG 1 cut(s) 254
BanII GRGCYC 1 cut(s) 1846
BbsI GAAGAC 3 cut(s) 43, 78, 142
BbvI GCAGC 5 cut(s) 151, 472, 587, 1194, 1547
BccI CCATC 3 cut(s) 595, 739, 743
BceAI ACGGC 1 cut(s) 1698
BciVI GTATCC 1 cut(s) 1544
BclI TGATCA 4 cut(s) 133, 792, 954, 1542
BcnI CCSGG 2 cut(s) 182, 376
BcoDI GTCTC 6 cut(s) 197, 323, 1202, 1343, 1348, 1754
BfaI CTAG 2 cut(s) 362, 1466
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1544
BisI GCNGC 6 cut(s) 165, 168, 486, 576, 1183, 1561
BlnI CCTAGG 1 cut(s) 1465
BlsI GCNGC 6 cut(s) 166, 169, 487, 577, 1184, 1562
BmcAI AGTACT 1 cut(s) 1571
Bme1390I CCNGG 2 cut(s) 182, 376
BmeT110I CYCGRG 2 cut(s) 347, 874
BmgT120I GGNCC 1 cut(s) 377
BmrFI CCNGG 2 cut(s) 182, 376
BmsI GCATC 5 cut(s) 607, 1304, 1462, 1630, 1816
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 3 cut(s) 43, 78, 142
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 1113, 1643
Bpu10I CCTNAGC 1 cut(s) 1080
BpuEI CTTGAG 4 cut(s) 251, 341, 755, 1364
BpuMI CCSGG 2 cut(s) 182, 376
Bsa29I ATCGAT 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 1555
BsaI GGTCTC 4 cut(s) 323, 1202, 1343, 1348
BsaJI CCNNGG 1 cut(s) 1465
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 1425
Bse1I ACTGG 3 cut(s) 786, 1339, 1626
Bse21I CCTNAGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 1465
BseGI GGATG 4 cut(s) 649, 754, 1500, 1645
BseLI CCNNNNNNNGG 2 cut(s) 255, 1425
BseMII CTCAG 7 cut(s) 268, 612, 980, 1094, 1175, 1350, 1789
BseNI ACTGG 3 cut(s) 786, 1339, 1626
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 5 cut(s) 151, 472, 587, 1194, 1547
Bsh1236I CGCG 1 cut(s) 1404
BshFI GGCC 1 cut(s) 379
BshVI ATCGAT 1 cut(s) 456
BsiHKCI CYCGRG 2 cut(s) 347, 874
BsiSI CCGG 3 cut(s) 182, 375, 554
BsiWI CGTACG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 1402
BslI CCNNNNNNNGG 2 cut(s) 255, 1425
BsmAI GTCTC 6 cut(s) 197, 323, 1202, 1343, 1348, 1754
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 1402
BsmI GAATGC 2 cut(s) 1081, 1657
BsnI GGCC 1 cut(s) 379
Bso31I GGTCTC 4 cut(s) 323, 1202, 1343, 1348
BsoBI CYCGRG 2 cut(s) 347, 874
Bsp1286I GDGCHC 1 cut(s) 1846
BspACI CCGC 4 cut(s) 168, 999, 1301, 1637
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 7 cut(s) 267, 613, 979, 1093, 1174, 1351, 1788
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 1 cut(s) 1404
BspPI GGATC 6 cut(s) 150, 302, 1009, 1096, 1311, 1391
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 4 cut(s) 323, 1202, 1343, 1348
BsrI ACTGG 3 cut(s) 786, 1339, 1626
BssECI CCNNGG 1 cut(s) 1465
BssT1I CCWWGG 1 cut(s) 1465
Bst4CI ACNGT 4 cut(s) 334, 343, 846, 899
Bst6I CTCTTC 2 cut(s) 52, 1790
BstAFI CTTAAG 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 1555
BstC8I GCNNGC 3 cut(s) 273, 381, 1629
BstDEI CTNAG 8 cut(s) 32, 254, 621, 966, 1080, 1161, 1359, 1775
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 4 cut(s) 649, 754, 1500, 1645
BstFNI CGCG 1 cut(s) 1404
BstMAI GTCTC 6 cut(s) 197, 323, 1202, 1343, 1348, 1754
BstMWI GCNNNNNNNGC 4 cut(s) 572, 584, 1140, 1677
BstNSI RCATGY 1 cut(s) 1631
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 180, 374
BstUI CGCG 1 cut(s) 1404
BstV1I GCAGC 5 cut(s) 151, 472, 587, 1194, 1547
BstV2I GAAGAC 3 cut(s) 43, 78, 142
BstX2I RGATCY 4 cut(s) 307, 1088, 1303, 1396
BstYI RGATCY 4 cut(s) 307, 1088, 1303, 1396
Bsu15I ATCGAT 1 cut(s) 456
Bsu36I CCTNAGG 1 cut(s) 254
BsuI GTATCC 1 cut(s) 1544
BsuRI GGCC 1 cut(s) 379
BsuTUI ATCGAT 1 cut(s) 456
BtsCI GGATG 4 cut(s) 649, 754, 1500, 1645
BtsIMutI CAGTG 5 cut(s) 129, 802, 889, 987, 1011
Cac8I GCNNGC 3 cut(s) 273, 381, 1629
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 456
CseI GACGC 1 cut(s) 179
Csp6I GTAC 5 cut(s) 339, 418, 895, 1482, 1570
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 8 cut(s) 141, 1237, 1247, 1421, 1442, 1628, 1756, 1857
CviQI GTAC 5 cut(s) 339, 418, 895, 1482, 1570
DdeI CTNAG 8 cut(s) 32, 254, 621, 966, 1080, 1161, 1359, 1775
DraI TTTAAA 1 cut(s) 409
DrdI GACNNNNNNGTC 1 cut(s) 1534
DseDI GACNNNNNNGTC 1 cut(s) 1534
Eam1104I CTCTTC 2 cut(s) 52, 1790
EarI CTCTTC 2 cut(s) 52, 1790
EciI GGCGGA 2 cut(s) 1014, 1316
Eco130I CCWWGG 1 cut(s) 1465
Eco24I GRGCYC 1 cut(s) 1846
Eco31I GGTCTC 4 cut(s) 323, 1202, 1343, 1348
Eco57I CTGAAG 2 cut(s) 1173, 1490
Eco81I CCTNAGG 1 cut(s) 254
Eco88I CYCGRG 2 cut(s) 347, 874
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoRI GAATTC 2 cut(s) 774, 1429
EcoT14I CCWWGG 1 cut(s) 1465
EcoT22I ATGCAT 1 cut(s) 1657
EcoT38I GRGCYC 1 cut(s) 1846
ErhI CCWWGG 1 cut(s) 1465
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 8 cut(s) 144, 1240, 1250, 1424, 1445, 1631, 1759, 1860
FalI AAGNNNNNCTT 6 cut(s) 74, 106, 260, 292, 1483, 1515
FaqI GGGAC 1 cut(s) 1402
FatI CATG 8 cut(s) 140, 1236, 1246, 1420, 1441, 1627, 1755, 1856
FbaI TGATCA 4 cut(s) 133, 792, 954, 1542
Fnu4HI GCNGC 6 cut(s) 165, 168, 486, 576, 1183, 1561
FokI GGATG 4 cut(s) 656, 761, 1507, 1652
FriOI GRGCYC 1 cut(s) 1846
Fsp4HI GCNGC 6 cut(s) 165, 168, 486, 576, 1183, 1561
FspBI CTAG 2 cut(s) 362, 1466
GluI GCNGC 6 cut(s) 165, 168, 486, 576, 1183, 1561
GsuI CTGGAG 2 cut(s) 1113, 1643
HaeIII GGCC 1 cut(s) 379
HapII CCGG 3 cut(s) 182, 375, 554
HgaI GACGC 1 cut(s) 179
Hin1II CATG 8 cut(s) 144, 1240, 1250, 1424, 1445, 1631, 1759, 1860
HindIII AAGCTT 4 cut(s) 369, 478, 536, 1230
HpaII CCGG 3 cut(s) 182, 375, 554
HphI GGTGA 3 cut(s) 112, 202, 827
Hpy166II GTNNAC 1 cut(s) 987
Hpy8I GTNNAC 1 cut(s) 987
HpyAV CCTTC 9 cut(s) 52, 139, 169, 235, 700, 1117, 1133, 1485, 1514
HpyCH4III ACNGT 4 cut(s) 334, 343, 846, 899
HpyCH4IV ACGT 4 cut(s) 893, 1203, 1554, 1751
HpyCH4V TGCA 7 cut(s) 524, 575, 764, 1134, 1475, 1655, 1690
HpyF10VI GCNNNNNNNGC 4 cut(s) 572, 584, 1140, 1677
HpyF3I CTNAG 8 cut(s) 32, 254, 621, 966, 1080, 1161, 1359, 1775
HpySE526I ACGT 4 cut(s) 893, 1203, 1554, 1751
Hsp92II CATG 8 cut(s) 144, 1240, 1250, 1424, 1445, 1631, 1759, 1860
Ksp22I TGATCA 4 cut(s) 133, 792, 954, 1542
LmnI GCTCC 1 cut(s) 1624
Lsp1109I GCAGC 5 cut(s) 151, 472, 587, 1194, 1547
LweI GCATC 5 cut(s) 607, 1304, 1462, 1630, 1816
MaeI CTAG 2 cut(s) 362, 1466
MaeII ACGT 4 cut(s) 893, 1203, 1554, 1751
MaeIII GTNAC 1 cut(s) 1168
MflI RGATCY 4 cut(s) 307, 1088, 1303, 1396
MhlI GDGCHC 1 cut(s) 1846
MluI ACGCGT 1 cut(s) 1402
MlyI GAGTC 4 cut(s) 7, 258, 359, 1756
MmeI TCCRAC 2 cut(s) 844, 954
Mph1103I ATGCAT 1 cut(s) 1657
MroXI GAANNNNTTC 4 cut(s) 149, 1571, 1598, 1721
MseI TTAA 8 cut(s) 23, 408, 495, 807, 855, 1322, 1364, 1833
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 3 cut(s) 182, 375, 554
MspR9I CCNGG 2 cut(s) 182, 376
Mva1269I GAATGC 2 cut(s) 1081, 1657
MvnI CGCG 1 cut(s) 1404
MwoI GCNNNNNNNGC 4 cut(s) 572, 584, 1140, 1677
NciI CCSGG 2 cut(s) 182, 376
NlaIII CATG 8 cut(s) 144, 1240, 1250, 1424, 1445, 1631, 1759, 1860
NsiI ATGCAT 1 cut(s) 1657
NspI RCATGY 1 cut(s) 1631
PaeI GCATGC 1 cut(s) 1631
PaeR7I CTCGAG 2 cut(s) 347, 874
PcsI WCGNNNNNNNCGW 1 cut(s) 1560
PctI GAATGC 2 cut(s) 1081, 1657
PdmI GAANNNNTTC 4 cut(s) 149, 1571, 1598, 1721
PfeI GAWTC 8 cut(s) 95, 605, 625, 635, 977, 1017, 1348, 1771
Pfl23II CGTACG 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 6 cut(s) 166, 169, 487, 577, 1184, 1562
PleI GAGTC 4 cut(s) 7, 258, 358, 1756
PpsI GAGTC 4 cut(s) 7, 258, 358, 1756
Ppu21I YACGTR 1 cut(s) 1555
PshAI GACNNNNGTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 1751
PspLI CGTACG 1 cut(s) 338
PspPI GGNCC 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 874
PsuI RGATCY 4 cut(s) 307, 1088, 1303, 1396
RsaI GTAC 5 cut(s) 340, 419, 896, 1483, 1571
RsaNI GTAC 5 cut(s) 339, 418, 895, 1482, 1570
SaqAI TTAA 8 cut(s) 23, 408, 495, 807, 855, 1322, 1364, 1833
SatI GCNGC 6 cut(s) 165, 168, 486, 576, 1183, 1561
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 1571
SchI GAGTC 4 cut(s) 7, 258, 359, 1756
ScrFI CCNGG 2 cut(s) 182, 376
SduI GDGCHC 1 cut(s) 1846
SfaNI GCATC 5 cut(s) 607, 1304, 1462, 1630, 1816
Sfr274I CTCGAG 2 cut(s) 347, 874
SlaI CTCGAG 2 cut(s) 347, 874
SmlI CTYRAG 7 cut(s) 266, 320, 347, 494, 734, 874, 1343
SmoI CTYRAG 7 cut(s) 266, 320, 347, 494, 734, 874, 1343
SphI GCATGC 1 cut(s) 1631
SsiI CCGC 4 cut(s) 168, 999, 1301, 1637
SspMI CTAG 2 cut(s) 362, 1466
StyD4I CCNGG 2 cut(s) 180, 374
StyI CCWWGG 1 cut(s) 1465
TaaI ACNGT 4 cut(s) 334, 343, 846, 899
TaiI ACGT 4 cut(s) 896, 1206, 1557, 1754
TatI WGTACW 2 cut(s) 1481, 1569
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 8 cut(s) 95, 605, 625, 635, 977, 1017, 1348, 1771
Tru1I TTAA 8 cut(s) 23, 408, 495, 807, 855, 1322, 1364, 1833
Tru9I TTAA 8 cut(s) 23, 408, 495, 807, 855, 1322, 1364, 1833
TscAI CASTG 5 cut(s) 136, 802, 889, 994, 1011
TseI GCWGC 5 cut(s) 164, 485, 575, 1182, 1560
TspDTI ATGAA 8 cut(s) 371, 563, 681, 907, 1083, 1730, 1744, 1820
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 5 cut(s) 136, 802, 889, 994, 1011
Vha464I CTTAAG 1 cut(s) 494
XagI CCTNNNNNAGG 1 cut(s) 253
XapI RAATTY 2 cut(s) 774, 1429
XceI RCATGY 1 cut(s) 1631
XhoI CTCGAG 2 cut(s) 347, 874
XmaJI CCTAGG 1 cut(s) 1465
XmnI GAANNNNTTC 4 cut(s) 149, 1571, 1598, 1721
XspI CTAG 2 cut(s) 362, 1466
ZrmI AGTACT 1 cut(s) 1571
Zsp2I ATGCAT 1 cut(s) 1657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.