Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

4369617 .. 4370036

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1062900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAATGTGCCAATACTGCTGCCCCTGCTTTTGCTTTGGTTAAATGCATGTTCAAGAACCGGTTTTTCTTGCCGTTTAGTGTGTTGGGCAATGTACTTGTTGAGATCAGTAGGGAAAATGGTAACTTTGTCGCGTTCTTACGGGTTTCTGAAGAGAATTGTAGGATTGCTTTGGATGAGAAGTTGGAGTTTTTGAACCCGGGTTTGGCTGCTTGTAATGCGGCGTTGGAGGGGTGTTGTCGTGAGCTTGAATCGTTGAGTGATGCCGAAAAAGCTGTTGAAACGATTGCGGTTTTGGGGATTGGGCCTGATGAGTCGAGTTCTGGTTTTCTTGCTCATTTGTATGCATTGAAGGGTGGGTTTCGTTTTTCGGATAAAAGGGTGTTTCGGAGCAGTTTGATTAATGGCTATGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

140

Amino Acids

15.18

Weight (kDa)

6.58

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	1 - 65	1.7e-31	At1g68980, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	221, 290
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	5 cut(s)	55, 196, 251, 281, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	247, 275
AluI	AGCT	2 cut(s)	247, 275
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	20, 209
AseI	ATTAAT	1 cut(s)	402
AsiGI	ACCGGT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	2 cut(s)	200, 201
AvaI	CYCGRG	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	7, 196
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	200, 201
BisI	GCNGC	3 cut(s)	21, 210, 222
BlsI	GCNGC	3 cut(s)	22, 211, 223
Bme1390I	CCNGG	2 cut(s)	200, 201
BmeT110I	CYCGRG	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	200, 201
BmsI	GCATC	1 cut(s)	253
BpuMI	CCSGG	2 cut(s)	200, 201
BsaJI	CCNNGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	7, 196
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	307
BshTI	ACCGGT	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	61, 200
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	2 cut(s)	221, 290
BspANI	GGCC	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 272
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	198, 199
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	7, 196
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	305
Cfr9I	CCCGGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	95
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	209, 247, 275, 307, 408
CviKI_1	RGCY	5 cut(s)	209, 247, 275, 307, 408
CviQI	GTAC	1 cut(s)	95
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	199
EcoT22I	ATGCAT	2 cut(s)	50, 349
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 345, 411
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	21, 210, 222
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	21, 210, 222
GluI	GCNGC	3 cut(s)	21, 210, 222
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	2 cut(s)	61, 200
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	2 cut(s)	251, 314
HpaII	CCGG	2 cut(s)	61, 200
Hpy188I	TCNGA	3 cut(s)	151, 373, 390
Hpy188III	TCNNGA	2 cut(s)	55, 242
HpyAV	CCTTC	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	48, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 272
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	5 cut(s)	39, 74, 213, 309, 321
Lsp1109I	GCAGC	2 cut(s)	7, 196
LweI	GCATC	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	1 cut(s)	164
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	165, 207
MnlI	CCTC	1 cut(s)	223
Mph1103I	ATGCAT	2 cut(s)	50, 349
MseI	TTAA	3 cut(s)	42, 402, 414
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	2 cut(s)	61, 200
MspR9I	CCNGG	2 cut(s)	200, 201
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 272
NciI	CCSGG	2 cut(s)	200, 201
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	1 cut(s)	52
NsiI	ATGCAT	2 cut(s)	50, 349
NspI	RCATGY	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	22, 211, 223
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	42, 402, 414
SatI	GCNGC	3 cut(s)	21, 210, 222
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	200, 201
SetI	ASST	2 cut(s)	249, 277
SfaNI	GCATC	1 cut(s)	253
SmaI	CCCGGG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	2 cut(s)	221, 290
StyD4I	CCNGG	2 cut(s)	198, 199
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	42, 402, 414
Tru9I	TTAA	3 cut(s)	42, 402, 414
TseI	GCWGC	2 cut(s)	20, 209
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	402
XceI	RCATGY	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	199
Zsp2I	ATGCAT	2 cut(s)	50, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.