Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

39509099 .. 39512445

Gene Structure 3347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAATGCTCAGAGAGGTATTTTGGGGCTTGATGTGCATGTGCCAATATTGACTGCTCTTTGCAAAGTGCATAGAACTGCTGAAGCCACTCAACTGGTTATGGATATTAGTAACTCGGAGCTTAAGTTGGACATGGAAACATATGATACTCTAATAGAAGCATCTATGTCTAGTCAAGATTTTCAATCGGCTTTTGATGGGGCATTATGTGACTTGATTAAGCTTTATGTCATGATTTATAGTGCTTTCAATGATAATGCTGGGAATTTGCTTCATGATTACACATTTGGGATAATGGAATCTGTTGCGAGCTCTCTTGTAGATATGCTTGTTCTTGGTTTGGTGAGTTCTGTAGGTGCAATGTACATCTTCATATTCTTTTGCATTTCTGTTGAAAAAGCTACAGCTGATACTGTGAAGTTAACATCTGAGTTTCTGGGTGTCAAAGAGGACTTGAAAACTGAGATCATAGCTGCATTGTGCAAAGATGTAGAGGTTTTAAGTTTGACAACAATTGCAACAGAGTCTTCATATTTCTATGGGAAGACAACAGCATTGATGACCACTGTTGCAGATAAGCTAGCTTACAACTGGTTGTTTGAGTTCCAATTTTTCAAAATGGTACTTCTCATATGCAGAATTACAGCATTGGATATTTACATCCTCTTTCTGCTTACTACTTGGAGTGCAAATGCTGGTGTTACCGCTCGTAAACCGGGCTCTATTCTAAAATGGCACAACTGCATTCTGCGTGACAAGTTGCTTCCCAAAGAACTTGATAATTCCTTGGCGTTAGTTCCAGTCACAACCTTCATAAGAACATCAAGTCTCCTTCAAAAGACAAACTTTAGTGGTTTCACCGTCAAAGGTGCTGGTAGTGGTAATCGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

298

Amino Acids

32.77

Weight (kDa)

5.27

Isoelectric Point (pI)

27.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	707
AciI	CCGC	1 cut(s)	705
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	365, 624
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	185, 250, 395, 457, 616, 836
AluBI	AGCT	8 cut(s)	121, 223, 312, 401, 407, 473, 580, 584
AluI	AGCT	8 cut(s)	121, 223, 312, 401, 407, 473, 580, 584
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	833
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	355, 850
AsuNHI	GCTAGC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	314, 722
BbsI	GAAGAC	2 cut(s)	519, 551
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	2 cut(s)	171, 581
BfmI	CTRYAG	2 cut(s)	351, 402
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	170
BmtI	GCTAGC	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	519, 551
BpuMI	CCSGG	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bse1I	ACTGG	3 cut(s)	99, 596, 800
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	1 cut(s)	660
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	23, 420, 453
BseNI	ACTGG	3 cut(s)	99, 596, 800
BseXI	GCAGC	1 cut(s)	460
BseYI	CCCAGC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	716
BsmAI	GTCTC	1 cut(s)	833
BsmI	GAATGC	2 cut(s)	10, 744
Bsp1286I	GDGCHC	2 cut(s)	314, 722
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	465
BspACI	CCGC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	22, 421, 454
BspHI	TCATGA	2 cut(s)	231, 274
BspOI	GCTAGC	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	366
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	99, 596, 800
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	786
Bst4CI	ACNGT	3 cut(s)	415, 568, 862
BstAFI	CTTAAG	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	310, 582
BstDEI	CTNAG	3 cut(s)	9, 429, 462
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	351, 402
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	2 cut(s)	519, 551
BstXI	CCANNNNNNTGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	310, 582
CciI	TCATGA	2 cut(s)	231, 274
Csp6I	GTAC	2 cut(s)	364, 623
CviAII	CATG	4 cut(s)	38, 133, 232, 275
CviQI	GTAC	2 cut(s)	364, 623
DdeI	CTNAG	3 cut(s)	9, 429, 462
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	2 cut(s)	314, 722
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	2 cut(s)	314, 722
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	41, 136, 235, 278
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FatI	CATG	4 cut(s)	37, 132, 231, 274
FauNDI	CATATG	2 cut(s)	142, 632
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	2 cut(s)	314, 722
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	2 cut(s)	171, 581
GluI	GCNGC	1 cut(s)	474
GsaI	CCCAGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	716
Hin1II	CATG	4 cut(s)	41, 136, 235, 278
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	299, 524
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	2 cut(s)	355, 850
Hpy166II	GTNNAC	2 cut(s)	423, 713
Hpy188I	TCNGA	3 cut(s)	12, 118, 430
Hpy188III	TCNNGA	4 cut(s)	176, 232, 275, 891
Hpy8I	GTNNAC	2 cut(s)	423, 713
HpyAV	CCTTC	2 cut(s)	820, 842
HpyCH4III	ACNGT	3 cut(s)	415, 568, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	9, 429, 462
Hsp92II	CATG	4 cut(s)	41, 136, 235, 278
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	80, 246, 422, 577, 681, 729, 813, 858
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	171, 581
MaeIII	GTNAC	5 cut(s)	110, 209, 700, 752, 802
MalI	GATC	1 cut(s)	467
MbiI	CCGCTC	1 cut(s)	707
MboI	GATC	1 cut(s)	465
MboII	GAAGA	3 cut(s)	361, 519, 556
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	314, 722
MluCI	AATT	5 cut(s)	265, 513, 608, 639, 781
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	8, 442, 487, 674
MseI	TTAA	4 cut(s)	123, 219, 422, 500
MspA1I	CMGCKG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	10, 744
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	717
NdeI	CATATG	2 cut(s)	142, 632
NdeII	GATC	1 cut(s)	465
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	4 cut(s)	41, 136, 235, 278
NmuCI	GTSAC	3 cut(s)	209, 752, 802
NspI	RCATGY	1 cut(s)	41
PagI	TCATGA	2 cut(s)	231, 274
PctI	GAATGC	2 cut(s)	10, 744
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	365, 624
RsaNI	GTAC	2 cut(s)	364, 623
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	123, 219, 422, 500
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	2 cut(s)	314, 722
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	2 cut(s)	351, 402
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	5 cut(s)	265, 513, 608, 639, 781
SsiI	CCGC	1 cut(s)	705
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	2 cut(s)	171, 581
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	3 cut(s)	415, 568, 862
TasI	AATT	5 cut(s)	265, 513, 608, 639, 781
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	4 cut(s)	123, 219, 422, 500
Tru9I	TTAA	4 cut(s)	123, 219, 422, 500
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	3 cut(s)	209, 752, 802
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	3 cut(s)	209, 752, 802
TspDTI	ATGAA	5 cut(s)	17, 263, 361, 519, 802
TspRI	CASTG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	2 cut(s)	171, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.