Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

48355829 .. 48360913

Gene Structure 5085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGTTTGATGGCAGGAACGAACGCTGCTAGCGTGGGTAGGTGGTCCAGGTTGGTGTCGCTGAGGCGGATCGTGGCTTTGGGTGGATCTGGGTCGCCGTGGTTGCGATGCCAAGCCAGAAAGGAGCGGACTTTGAGTTTAAGAGAAGGTGATGGGGAATGTTTGGATTTGGATGGAGGAACGTATTGTCAAGTTGTTAAAGAATTTCTTGATAACGGAAATGTGAAAGAGTTGGCAACTTTGATTATTGAAGCTCAGAAGCTTGAGTCTTCTATAATTGTGGTTGATAGATCAGTTGGTTATGGTACTGTTAATGCTTGCGTTGGTATTGGATTATCAGATAAGGCACACATCATCCTTGATGAAATAAATGCTCAGGGAGCTACTTTGGGGCTTGATGTGCATGTGCCAACATTGAAGGCTTATTGCAAGGAGCATAGAACTGCTGAAACCACTCAACTGGCTATGGATATTAGTAACTCCGGGCTTAGGTTGGACATGGAAACATATGATACTATAATAGGAGCATCTATCAGTGGAGGTTATGCAGTCTCTTCCCAACGGTGGAGGGTGTGCGCTAGCGACGGTGGCACCACTACAGCGGTGGCTGCCATGGAAAGTGCAACTGGTTCGGCACGAGTTCCTTGCTGTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

220

Amino Acids

23.19

Weight (kDa)

5.45

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	3 cut(s)	67, 127, 602
AclWI	GGATC	2 cut(s)	77, 94
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	489, 564
AgsI	TTSAA	2 cut(s)	251, 418
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	3 cut(s)	254, 262, 383
AluI	AGCT	3 cut(s)	254, 262, 383
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	2 cut(s)	77, 94
ApeKI	GCWGC	2 cut(s)	26, 608
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	2 cut(s)	29, 578
AvaII	GGWCC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	590
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	13, 595
BccI	CCATC	3 cut(s)	4, 146, 167
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	3 cut(s)	612, 627, 646
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	2 cut(s)	30, 579
BfmI	CTRYAG	1 cut(s)	597
BisI	GCNGC	2 cut(s)	27, 609
BlsI	GCNGC	2 cut(s)	28, 610
Bme1390I	CCNGG	2 cut(s)	49, 484
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	2 cut(s)	49, 484
BmsI	GCATC	2 cut(s)	98, 536
BmtI	GCTAGC	2 cut(s)	33, 582
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	3 cut(s)	62, 375, 488
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	98, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 564
Bse1I	ACTGG	2 cut(s)	465, 631
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	98, 612
BseGI	GGATG	2 cut(s)	178, 354
BseLI	CCNNNNNNNGG	2 cut(s)	489, 564
BseMII	CTCAG	3 cut(s)	53, 269, 389
BseNI	ACTGG	2 cut(s)	465, 631
BseXI	GCAGC	2 cut(s)	13, 595
BshNI	GGYRCC	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	489, 564
BsmAI	GTCTC	1 cut(s)	556
Bsp143I	GATC	3 cut(s)	69, 86, 290
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	3 cut(s)	67, 127, 602
BspCNI	CTCAG	3 cut(s)	54, 268, 388
BspLI	GGNNCC	1 cut(s)	592
BspOI	GCTAGC	2 cut(s)	33, 582
BspPI	GGATC	2 cut(s)	77, 94
BspT107I	GGYRCC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	465, 631
BssECI	CCNNGG	2 cut(s)	98, 612
BssMI	GATC	3 cut(s)	69, 86, 290
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	310, 564, 587
Bst6I	CTCTTC	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	31, 319, 580
BstDEI	CTNAG	4 cut(s)	62, 255, 375, 488
BstDSI	CCRYGG	2 cut(s)	98, 612
BstF5I	GGATG	2 cut(s)	178, 354
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	3 cut(s)	72, 89, 293
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	3 cut(s)	69, 86, 290
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 380, 400, 588, 608
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	47, 482
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	13, 595
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	86
BtgI	CCRYGG	2 cut(s)	98, 612
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	178, 354
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	31, 319, 580
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	3 cut(s)	404, 499, 613
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	4 cut(s)	62, 255, 375, 488
DpnI	GATC	3 cut(s)	71, 88, 292
DpnII	GATC	3 cut(s)	69, 86, 290
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	3 cut(s)	407, 502, 616
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	3 cut(s)	403, 498, 612
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	27, 609
FokI	GGATG	2 cut(s)	185, 341
Fsp4HI	GCNGC	2 cut(s)	27, 609
FspBI	CTAG	2 cut(s)	30, 579
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	2 cut(s)	27, 609
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	407, 502, 616
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	258, 340
Hpy188III	TCNNGA	2 cut(s)	209, 653
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	2 cut(s)	140, 412
HpyCH4III	ACNGT	3 cut(s)	310, 564, 587
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	403, 429, 548, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 380, 400, 588, 608
HpyF3I	CTNAG	4 cut(s)	62, 255, 375, 488
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	407, 502, 616
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	69, 86, 290
LmnI	GCTCC	4 cut(s)	124, 380, 433, 524
LpnPI	CCDG	8 cut(s)	34, 61, 75, 130, 362, 446, 496, 612
Lsp1109I	GCAGC	2 cut(s)	13, 595
LweI	GCATC	2 cut(s)	98, 536
MaeI	CTAG	2 cut(s)	30, 579
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	3 cut(s)	71, 88, 292
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	3 cut(s)	69, 86, 290
MboII	GAAGA	2 cut(s)	261, 546
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	2 cut(s)	203, 276
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	4 cut(s)	57, 170, 533, 561
MseI	TTAA	3 cut(s)	140, 198, 312
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	49, 484
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	5 cut(s)	103, 380, 400, 588, 608
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	69, 86, 290
NheI	GCTAGC	2 cut(s)	29, 578
NlaIII	CATG	3 cut(s)	407, 502, 616
NlaIV	GGNNCC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	28, 610
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	140, 198, 312
SatI	GCNGC	2 cut(s)	27, 609
Sau3AI	GATC	3 cut(s)	69, 86, 290
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	49, 484
SetI	ASST	9 cut(s)	44, 53, 151, 185, 256, 264, 385, 494, 544
SfaNI	GCATC	2 cut(s)	98, 536
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	203, 276
SsiI	CCGC	3 cut(s)	67, 127, 602
SspMI	CTAG	2 cut(s)	30, 579
StyD4I	CCNGG	2 cut(s)	47, 482
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	3 cut(s)	310, 564, 587
TaiI	ACGT	1 cut(s)	185
TasI	AATT	2 cut(s)	203, 276
Tru1I	TTAA	3 cut(s)	140, 198, 312
Tru9I	TTAA	3 cut(s)	140, 198, 312
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	2 cut(s)	26, 608
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XspI	CTAG	2 cut(s)	30, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.