Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025676.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 720

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025676.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggatattagtaactcggggcttaagttggacatggaaacatatgatactctaatagaagcatctatgtctagtcaagattttcaatcggctttttctttgtttagggacatgagagaagcaagaacacttgacttaaagggtagttacctgaccattatgacaggcttaatggaaaatcaccggccagagttgatggcagctttcttagatgaggttgtggaggaccctcgaattgaagtgggtacccatgactggaattcaattattcatgccttttgtaaagctgggcgactagaagatgcgaggaggacttttagaaggatggtattcttgcagtataaacctaatgaccagacatatttgtcattaattagtgggtatgtttctgtggagaaatatttttgtgttttgatgctgtggcatgaggtgaagagaaacatttcagttgatggagagaaggggcttaaatttgatcacaacatggttgatgcattcctgtatgctcttgttaagggaggcttttttgatgcagtaatgcaagtcgtcgagaaatctcaagagatgaaaatctttgtggataaatggaggtacaagcaggcattcatggaaacccataagaagcttaaagtgtcaaagttgagaaagaggagtttcaggaaaatggaagcacttgttgctttcaagaattgggctggtctcaatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

236

Amino Acids

27.58

Weight (kDa)

8.71

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	259, 470
AfaI	GTAC	2 cut(s)	247, 593
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	86, 239, 264, 685
AluBI	AGCT	3 cut(s)	203, 287, 625
AluI	AGCT	3 cut(s)	203, 287, 625
Alw26I	GTCTC	1 cut(s)	704
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	259, 470
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	173, 442
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	190, 319, 446
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	72, 296
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	228, 247
BmsI	GCATC	5 cut(s)	71, 292, 405, 481, 520
BpuEI	CTTGAG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	260
Bse8I	GATNNNNATC	1 cut(s)	569
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	569
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	322, 664
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	2 cut(s)	494, 602
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	475
BspANI	GGCC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	228, 247
BspT107I	GGYRCC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	183
BssMI	GATC	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstV1I	GCAGC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	246, 592
CviAII	CATG	8 cut(s)	34, 112, 251, 272, 425, 484, 607, 708
CviQI	GTAC	2 cut(s)	246, 592
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	259
EcoT22I	ATGCAT	2 cut(s)	496, 709
FaeI	CATG	8 cut(s)	37, 115, 254, 275, 428, 487, 610, 711
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	8 cut(s)	33, 111, 250, 271, 424, 483, 606, 707
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	72, 296
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	8 cut(s)	37, 115, 254, 275, 428, 487, 610, 711
HindIII	AAGCTT	1 cut(s)	623
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	173, 442
Hpy188III	TCNNGA	5 cut(s)	77, 550, 560, 658, 685
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	2 cut(s)	315, 454
HpyCH4V	TGCA	5 cut(s)	337, 494, 533, 541, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	8 cut(s)	37, 115, 254, 275, 428, 487, 610, 711
KpnI	GGTACC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	5 cut(s)	71, 292, 405, 481, 520
MaeI	CTAG	2 cut(s)	72, 296
MaeIII	GTNAC	2 cut(s)	11, 146
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	2 cut(s)	311, 445
MluCI	AATT	6 cut(s)	234, 259, 264, 372, 470, 688
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	9 cut(s)	208, 217, 240, 300, 303, 421, 512, 582, 642
Mph1103I	ATGCAT	2 cut(s)	496, 709
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	7 cut(s)	24, 137, 170, 371, 468, 513, 627
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	184
Mva1269I	GAATGC	2 cut(s)	494, 602
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	8 cut(s)	37, 115, 254, 275, 428, 487, 610, 711
NlaIV	GGNNCC	2 cut(s)	228, 247
NsiI	ATGCAT	2 cut(s)	496, 709
PctI	GAATGC	2 cut(s)	494, 602
PdmI	GAANNNNTTC	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	228, 247
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	247, 593
RsaNI	GTAC	2 cut(s)	246, 592
SaqAI	TTAA	7 cut(s)	24, 137, 170, 371, 468, 513, 627
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	226
SetI	ASST	8 cut(s)	153, 205, 219, 289, 349, 432, 593, 627
SfaNI	GCATC	5 cut(s)	71, 292, 405, 481, 520
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	23, 558
SmoI	CTYRAG	2 cut(s)	23, 558
Sse9I	AATT	6 cut(s)	234, 259, 264, 372, 470, 688
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	2 cut(s)	72, 296
TaqI	TCGA	2 cut(s)	232, 549
TasI	AATT	6 cut(s)	234, 259, 264, 372, 470, 688
Tru1I	TTAA	7 cut(s)	24, 137, 170, 371, 468, 513, 627
Tru9I	TTAA	7 cut(s)	24, 137, 170, 371, 468, 513, 627
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	260, 581, 595
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	371
XapI	RAATTY	2 cut(s)	259, 470
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	2 cut(s)	72, 296
Zsp2I	ATGCAT	2 cut(s)	496, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.