Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000029.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

141276 .. 142426

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000029.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgactgaagccgattcgaatttgttgaagtttgggtcactaccggctactatggttgctacgtctcttaaggcgtcggggaagacatcgtcgtcagctacggctacagctggaggtagtattcgaatcttggagagactaaactttactcgatcacatcatgaagcaatatcgaatttgaataatgataattctgccgttgtggtatctggaagtagtagtgaggatattactgtttttggtatgactgacaaattgaatactgtaagtaataggatgggtgttggtacgagaaataaggagcctgagattcaaagcattgaaggggtgactagtgtgatgtggaagaataatgctcaatcacatcatttccagcatactaccttaggtaatggatcatctgttgtgaactcaagtctctactctgaggttcatacttccacgggttttggcaacagattattgaatgataattttggtgaagcaaatgtttctgttgaagacagctttgggaaaatgaaaatgaattctgaaaggatttgtcattgtgagacgaaagagattatactcttttgcaaggaagcattcgatggaattggtgaaatgactcaaacctcattttccttgaactataaagttggagtagaaatttggcctcctgatgatggggaatggttggatttggatggagaaacatattgtcgagttgttagaggatttcttgataacacaaatttgaaagagttggcaattttgattattaaagctcagaagctagaatcttctacaattgtggttgatagatcatgttgttgcggtattgttattgcttgtattggtattgaattatcagataaagaacacagcattcttgatgaaatgaatgctcagggaggtattttggggcttgatgtgcatgtgccaatattgaatgccatttgcaaagagagtagaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

319

Amino Acids

34.59

Weight (kDa)

5.15

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	91
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	5 cut(s)	19, 175, 526, 648, 733
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	665
AflII	CTTAAG	1 cut(s)	68
AhlI	ACTAGT	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	5 cut(s)	98, 110, 507, 767, 775
AluI	AGCT	5 cut(s)	98, 110, 507, 767, 775
Alw26I	GTCTC	4 cut(s)	69, 130, 422, 545
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	653
ApoI	RAATTY	5 cut(s)	19, 175, 526, 648, 733
AsuHPI	GGTGA	3 cut(s)	340, 491, 611
AsuII	TTCGAA	2 cut(s)	17, 124
AxyI	CCTNAGG	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	89, 507
BccI	CCATC	4 cut(s)	271, 584, 659, 680
BceAI	ACGGC	2 cut(s)	117, 182
BcoDI	GTCTC	4 cut(s)	69, 130, 422, 545
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	2 cut(s)	333, 776
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	89, 507
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu14I	TTCGAA	2 cut(s)	17, 124
BpuEI	CTTGAG	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse118I	RCCGGY	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	282, 691
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	4 cut(s)	297, 417, 782, 902
BshFI	GGCC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	4 cut(s)	69, 130, 422, 545
BsmBI	CGTCTC	2 cut(s)	69, 545
BsmI	GAATGC	4 cut(s)	584, 867, 889, 937
BsnI	GGCC	1 cut(s)	655
Bsp119I	TTCGAA	2 cut(s)	17, 124
Bsp143I	GATC	3 cut(s)	152, 395, 803
BspACI	CCGC	1 cut(s)	816
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	4 cut(s)	298, 418, 781, 901
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	403
BspT104I	TTCGAA	2 cut(s)	17, 124
BspTI	CTTAAG	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	3 cut(s)	152, 395, 803
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	235, 265
BstACI	GRCGYC	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	68
BstBI	TTCGAA	2 cut(s)	17, 124
BstDEI	CTNAG	5 cut(s)	306, 385, 426, 768, 888
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	282, 691
BstKTI	GATC	3 cut(s)	155, 398, 806
BstMAI	GTCTC	4 cut(s)	69, 130, 422, 545
BstMBI	GATC	3 cut(s)	152, 395, 803
BstMWI	GCNNNNNNNGC	1 cut(s)	913
BstNSI	RCATGY	1 cut(s)	920
BstSFI	CTRYAG	1 cut(s)	105
BstV2I	GAAGAC	2 cut(s)	89, 507
Bsu36I	CCTNAGG	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	655
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	282, 691
CciI	TCATGA	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	288
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	3 cut(s)	161, 807, 917
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	5 cut(s)	306, 385, 426, 768, 888
DpnI	GATC	3 cut(s)	154, 397, 805
DpnII	GATC	3 cut(s)	152, 395, 803
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	526
Esp3I	CGTCTC	2 cut(s)	69, 545
FaeI	CATG	3 cut(s)	164, 810, 920
FatI	CATG	3 cut(s)	160, 806, 916
FokI	GGATG	2 cut(s)	289, 698
FspBI	CTAG	2 cut(s)	333, 776
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	164, 810, 920
HinfI	GANTC	5 cut(s)	14, 126, 310, 607, 779
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	340, 491, 611
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	4 cut(s)	427, 532, 771, 853
Hpy188III	TCNNGA	5 cut(s)	161, 210, 659, 722, 872
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	79, 94
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	576, 916, 942
HpyF10VI	GCNNNNNNNGC	1 cut(s)	913
HpyF3I	CTNAG	5 cut(s)	306, 385, 426, 768, 888
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	164, 810, 920
Kzo9I	GATC	3 cut(s)	152, 395, 803
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	57, 96, 195, 318, 386, 672, 875
MaeI	CTAG	2 cut(s)	333, 776
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	36, 328
MalI	GATC	3 cut(s)	154, 397, 805
MboI	GATC	3 cut(s)	152, 395, 803
MboII	GAAGA	4 cut(s)	94, 358, 512, 774
MfeI	CAATTG	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	601
MmeI	TCCRAC	2 cut(s)	619, 657
MnlI	CCTC	7 cut(s)	107, 217, 421, 625, 666, 707, 887
MseI	TTAA	3 cut(s)	69, 762, 958
MspA1I	CMGCKG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	4 cut(s)	584, 867, 889, 937
MwoI	GCNNNNNNNGC	1 cut(s)	913
NdeII	GATC	3 cut(s)	152, 395, 803
NlaIII	CATG	3 cut(s)	164, 810, 920
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	36, 328
NspI	RCATGY	1 cut(s)	920
NspV	TTCGAA	2 cut(s)	17, 124
PagI	TCATGA	1 cut(s)	160
PctI	GAATGC	4 cut(s)	584, 867, 889, 937
PfeI	GAWTC	4 cut(s)	14, 126, 310, 779
PflFI	GACNNNGTC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	69, 762, 958
Sau3AI	GATC	3 cut(s)	152, 395, 803
SchI	GAGTC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	2 cut(s)	17, 124
SmlI	CTYRAG	2 cut(s)	68, 412
SmoI	CTYRAG	2 cut(s)	68, 412
SpeI	ACTAGT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	816
SspI	AATATT	1 cut(s)	927
SspMI	CTAG	2 cut(s)	333, 776
TaaI	ACNGT	2 cut(s)	235, 265
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	6 cut(s)	17, 124, 151, 173, 588, 703
TfiI	GAWTC	4 cut(s)	14, 126, 310, 779
Tru1I	TTAA	3 cut(s)	69, 762, 958
Tru9I	TTAA	3 cut(s)	69, 762, 958
TseFI	GTSAC	2 cut(s)	36, 328
Tsp45I	GTSAC	2 cut(s)	36, 328
TspDTI	ATGAA	6 cut(s)	177, 422, 533, 539, 891, 896
Tth111I	GACNNNGTC	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	68
XapI	RAATTY	5 cut(s)	19, 175, 526, 648, 733
XceI	RCATGY	1 cut(s)	920
XspI	CTAG	2 cut(s)	333, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.