Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026128.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 506

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026128.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 506 bp

aggaaataaaggaagggcaggtgacgttggattctgcggttcatgactggaacaatgtaatccactttttctgcaggaagagattgatgcacgatgctgagaaggctctgaaaaagatgagaagtctggggcatgccccaaatgctcaaactttccattctatggttactgggtatgctgctgtaggaggaaagtatatagaggtaacagagctgtggggagagatgaagtctctagcttataacacttcaatgaaatttgatcaggaactcctggattctgttctttacactttcgttaggggtgggtttttcagtagagcaaatgaagtcttggacatgatggagaaagcgaagatgttcattgacaagtacaagtacagaacactcttcttgaagtaccataaaacacttcacaaaggcaaagctcccaaattccagacagaatcccaacataaaaagagagaagcagcattagcatttaagaactggataggagtgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

167

Amino Acids

19.41

Weight (kDa)

9.5

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AarI	CACCTGC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	256, 433
AfaI	GTAC	3 cut(s)	373, 379, 400
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	251, 396
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	213, 238, 427
AluI	AGCT	3 cut(s)	213, 238, 427
Alw26I	GTCTC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	178, 469
ApoI	RAATTY	2 cut(s)	256, 433
Asp700I	GAANNNNTTC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	165, 481
BccI	CCATC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	274
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	235
BfmI	CTRYAG	2 cut(s)	72, 182
BfuAI	ACCTGC	1 cut(s)	9
BisI	GCNGC	2 cut(s)	179, 470
BlsI	GCNGC	2 cut(s)	180, 471
Bme1390I	CCNGG	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	77, 84
BmuI	ACTGGG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	52, 174, 493
BseBI	CCWGG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	52, 174, 493
BseXI	GCAGC	2 cut(s)	165, 481
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	9
BsrI	ACTGG	3 cut(s)	52, 174, 493
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	73, 394
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	98
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 142, 475
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	72, 182
BstV1I	GCAGC	2 cut(s)	165, 481
BveI	ACCTGC	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	372, 378, 399
CviAII	CATG	3 cut(s)	43, 133, 339
CviJI	RGCY	4 cut(s)	106, 213, 238, 427
CviKI_1	RGCY	4 cut(s)	106, 213, 238, 427
CviQI	GTAC	3 cut(s)	372, 378, 399
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	73, 394
EarI	CTCTTC	2 cut(s)	73, 394
EcoRII	CCWGG	1 cut(s)	272
FaeI	CATG	3 cut(s)	46, 136, 342
FatI	CATG	3 cut(s)	42, 132, 338
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	179, 470
Fsp4HI	GCNGC	2 cut(s)	179, 470
FspBI	CTAG	1 cut(s)	235
GluI	GCNGC	2 cut(s)	179, 470
Hin1II	CATG	3 cut(s)	46, 136, 342
HinfI	GANTC	3 cut(s)	31, 277, 445
HphI	GGTGA	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	4 cut(s)	43, 265, 393, 438
HpyAV	CCTTC	2 cut(s)	7, 96
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	74, 90
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 142, 475
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	46, 136, 342
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	2 cut(s)	165, 481
LweI	GCATC	2 cut(s)	77, 84
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	3 cut(s)	21, 165, 204
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	3 cut(s)	90, 366, 381
MluCI	AATT	2 cut(s)	256, 433
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	181, 195
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	3 cut(s)	103, 142, 475
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	46, 136, 342
NmuCI	GTSAC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	31, 277, 445
PflMI	CCANNNNNTGG	1 cut(s)	162
PfoI	TCCNGGA	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	180, 471
PsiI	TTATAA	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	373, 379, 400
RsaNI	GTAC	3 cut(s)	372, 378, 399
RseI	CAYNNNNRTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	2 cut(s)	179, 470
Sau3AI	GATC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	6 cut(s)	23, 28, 206, 215, 240, 429
SfaNI	GCATC	2 cut(s)	77, 84
SfcI	CTRYAG	2 cut(s)	72, 182
SmiMI	CAYNNNNRTG	1 cut(s)	250
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	256, 433
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	272
TaiI	ACGT	1 cut(s)	28
TasI	AATT	2 cut(s)	256, 433
TatI	WGTACW	2 cut(s)	371, 377
TfiI	GAWTC	3 cut(s)	31, 277, 445
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	178, 469
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	5 cut(s)	31, 241, 268, 341, 351
Van91I	CCANNNNNTGG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	256, 433
XceI	RCATGY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.