Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000331.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

88958 .. 90634

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000331.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

atggcctttgagaagcttcagttaatggggcttccatttctgagacctgaggattactatgtaaaaatggtgaagtcggagtcccaattggggaaagtgaagagccaatttttggtggaaatgagagccaatctgactcaaacctctttgtctcaggtatatactactttgaatttgaatttcaattttcaagatgttagaagctcttttgagagttttttgtccaatgtgattaagctctacaatcttagttccttgaactgtaaagttggagcagaaatttggcctcctgatggtggggaatggttggatttggatggtgaaaccaattgtcgaattgttataggatttcttgataacaaaaatgtgaaagaattggcaactttgattattaaagctcagaagctagagtcttctacaaatgtggtttatagatcatgttgttgcggtattgtttttgcttgtgttggtattgaattttcggataaagaacacaacattcttgatgaagtgaatgctcaaggaggtattttggggcgtgatgtgcatgtgccaatattgaatgctctttgcaaagagcatagaactgctgaagccactcaattgtttatggatattactaactctcagcctgagttggacatgaacgtgcttgccaaaatacttttgaagagtcttgttaaggagcaagtgagttcaaatgttgttataatggattcaattgtggctgcattatgcggaaggtgtattgactccattgagctacatgtcaagatggatgacgttggaatttcatttttaaattggttgctcgcatttcctaatgcaaagttcaagagagaagctgcaagtataagacacagcttggcattttatattgacgatcagatgggtttggagatttcgacattaaaacatgaactgcaaacggctaaaagtacacatgaaagctactgcctgcaattagaggtaaatgccaaagaagttcatggctgcgctctgaggagatgtttatttgatcttgtcttgccaaatgtagttgtcaatgtatatggccagtggggttatattgattatgcatatcagatgttcaaattggttgaatgtaaagatgttgtgtcttggatgagtacgatgtcttgttatgttcattatgggcttgcaagtgaggcttttgaactttgtcggctcatgaaagaaataaatgttgaacctaattatttcaatgcttgtgggatgcatgatcatggcaaggaagccattgatttattcaagaggatggaagaccaaaagattgcttctgatcgtattatgtttttggcagaagtctttcacattaagggtcaaatggaaactgatcataggcttgctaaccactgggagaagatatggttgcttattgcaattgcaattattcagtggcatttaaatggagctactgaattgaatctatcaaatggcatgagagtttgctataatagtacaaactttcttgacgagcagtttatctttacagggttctcatttgggggtctatccaaacttgttgcaattgagtacttttattgcttgaaggggccaactattgcaggagaaatgggtgtatatggttatagatctccagttctgttgaatatgcttgcgggtaagagagccgaagtcagcacaaatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

558

Amino Acids

63.18

Weight (kDa)

5.66

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	3 cut(s)	447, 738, 1643
AcoI	YGGCCR	1 cut(s)	1054
AcsI	RAATTY	5 cut(s)	172, 178, 279, 476, 789
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	4 cut(s)	940, 1132, 1483, 1559
AfiI	CCNNNNNNNGG	4 cut(s)	90, 112, 293, 296
AflIII	ACRYGT	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	37, 156
AoxI	GGCC	4 cut(s)	3, 284, 1054, 1577
ApeKI	GCWGC	3 cut(s)	728, 845, 993
ApoI	RAATTY	5 cut(s)	172, 178, 279, 476, 789
Asp700I	GAANNNNTTC	1 cut(s)	1329
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	1 cut(s)	1577
AsuHPI	GGTGA	2 cut(s)	82, 332
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	1056
BbsI	GAAGAC	2 cut(s)	405, 1290
BbvI	GCAGC	3 cut(s)	715, 832, 980
BccI	CCATC	5 cut(s)	287, 311, 769, 883, 1273
BceAI	ACGGC	1 cut(s)	945
BclI	TGATCA	2 cut(s)	1243, 1357
BcoDI	GTCTC	2 cut(s)	37, 156
BfaI	CTAG	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1616
BisI	GCNGC	3 cut(s)	729, 846, 994
BlsI	GCNGC	3 cut(s)	730, 847, 995
BmcAI	AGTACT	1 cut(s)	1559
BmgT120I	GGNCC	1 cut(s)	1577
BmiI	GGNNCC	1 cut(s)	1578
BmrI	ACTGGG	1 cut(s)	1387
BmsI	GCATC	1 cut(s)	1227
BmuI	ACTGGG	1 cut(s)	1387
BpiI	GAAGAC	2 cut(s)	405, 1290
BpmI	CTGGAG	1 cut(s)	1605
BpuEI	CTTGAG	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 112, 293, 296
Bse1I	ACTGG	3 cut(s)	1057, 1382, 1622
Bse21I	CCTNAGG	1 cut(s)	48
BseGI	GGATG	5 cut(s)	322, 784, 1131, 1242, 1284
BseLI	CCNNNNNNNGG	4 cut(s)	90, 112, 293, 296
BseMII	CTCAG	7 cut(s)	32, 39, 167, 413, 624, 641, 992
BseNI	ACTGG	3 cut(s)	1057, 1382, 1622
BseRI	GAGGAG	1 cut(s)	1018
BseXI	GCAGC	3 cut(s)	715, 832, 980
BshFI	GGCC	4 cut(s)	5, 286, 1056, 1579
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	4 cut(s)	90, 112, 293, 296
BsmAI	GTCTC	2 cut(s)	37, 156
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	2 cut(s)	520, 568
BsnI	GGCC	4 cut(s)	5, 286, 1056, 1579
Bso31I	GGTCTC	1 cut(s)	37
Bsp143I	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
BspACI	CCGC	3 cut(s)	447, 738, 1643
BspANI	GGCC	4 cut(s)	5, 286, 1056, 1579
BspCNI	CTCAG	7 cut(s)	33, 40, 166, 412, 625, 640, 993
BspHI	TCATGA	1 cut(s)	1191
BspLI	GGNNCC	1 cut(s)	1578
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	1057, 1382, 1622
BssMI	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	95, 665
BstC8I	GCNNGC	6 cut(s)	654, 813, 959, 1161, 1368, 1641
BstDEI	CTNAG	8 cut(s)	41, 48, 153, 248, 399, 627, 633, 1001
BstF5I	GGATG	5 cut(s)	322, 784, 1131, 1242, 1284
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	7 cut(s)	437, 886, 1021, 1246, 1306, 1360, 1619
BstMAI	GTCTC	2 cut(s)	37, 156
BstMBI	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 1169
BstNSI	RCATGY	2 cut(s)	551, 770
BstV1I	GCAGC	3 cut(s)	715, 832, 980
BstV2I	GAAGAC	2 cut(s)	405, 1290
BstX2I	RGATCY	1 cut(s)	1616
BstYI	RGATCY	1 cut(s)	1616
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	5, 286, 1056, 1579
BtsCI	GGATG	5 cut(s)	322, 784, 1131, 1242, 1284
BtsIMutI	CAGTG	3 cut(s)	1064, 1375, 1424
Cac8I	GCNNGC	6 cut(s)	654, 813, 959, 1161, 1368, 1641
CciI	TCATGA	1 cut(s)	1191
CfoI	GCGC	1 cut(s)	998
Cfr13I	GGNCC	1 cut(s)	1577
Csp6I	GTAC	4 cut(s)	939, 1131, 1482, 1558
CspCI	CAANNNNNGTGG	2 cut(s)	1213, 1248
CviQI	GTAC	4 cut(s)	939, 1131, 1482, 1558
DdeI	CTNAG	8 cut(s)	41, 48, 153, 248, 399, 627, 633, 1001
DpnI	GATC	7 cut(s)	436, 885, 1020, 1245, 1305, 1359, 1618
DpnII	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
DraI	TTTAAA	2 cut(s)	801, 1428
EaeI	YGGCCR	1 cut(s)	1054
Eam1104I	CTCTTC	2 cut(s)	95, 665
EarI	CTCTTC	2 cut(s)	95, 665
Eco31I	GGTCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	612
Eco81I	CCTNAGG	1 cut(s)	48
EcoT22I	ATGCAT	2 cut(s)	1081, 1242
FalI	AAGNNNNNCTT	2 cut(s)	1156, 1188
FaqI	GGGAC	1 cut(s)	67
FauI	CCCGC	1 cut(s)	1636
FbaI	TGATCA	2 cut(s)	1243, 1357
Fnu4HI	GCNGC	3 cut(s)	729, 846, 994
FokI	GGATG	5 cut(s)	329, 791, 1138, 1249, 1291
Fsp4HI	GCNGC	3 cut(s)	729, 846, 994
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	997
GluI	GCNGC	3 cut(s)	729, 846, 994
GsuI	CTGGAG	1 cut(s)	1605
HaeIII	GGCC	4 cut(s)	5, 286, 1056, 1579
HhaI	GCGC	1 cut(s)	998
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	7 cut(s)	80, 136, 410, 673, 716, 752, 1447
HphI	GGTGA	2 cut(s)	82, 332
Hpy166II	GTNNAC	1 cut(s)	941
Hpy188I	TCNGA	9 cut(s)	42, 79, 135, 402, 484, 888, 1002, 1086, 1303
Hpy188III	TCNNGA	9 cut(s)	191, 290, 353, 503, 772, 835, 1192, 1273, 1493
Hpy8I	GTNNAC	1 cut(s)	941
HpyAV	CCTTC	2 cut(s)	735, 1567
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	2 cut(s)	648, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 1169
HpyF3I	CTNAG	8 cut(s)	41, 48, 153, 248, 399, 627, 633, 1001
HpySE526I	ACGT	2 cut(s)	648, 783
HspAI	GCGC	1 cut(s)	996
Ksp22I	TGATCA	2 cut(s)	1243, 1357
Kzo9I	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	3 cut(s)	272, 685, 1433
Lsp1109I	GCAGC	3 cut(s)	715, 832, 980
LweI	GCATC	1 cut(s)	1227
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	648, 783
MalI	GATC	7 cut(s)	436, 885, 1020, 1245, 1305, 1359, 1618
MboI	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
MboII	GAAGA	5 cut(s)	112, 405, 682, 1295, 1396
MfeI	CAATTG	6 cut(s)	86, 328, 602, 720, 1404, 1551
MflI	RGATCY	1 cut(s)	1616
MlsI	TGGCCA	1 cut(s)	1056
MluNI	TGGCCA	1 cut(s)	1056
MlyI	GAGTC	5 cut(s)	89, 130, 419, 682, 746
MmeI	TCCRAC	5 cut(s)	57, 250, 288, 618, 766
MnlI	CCTC	8 cut(s)	43, 154, 297, 518, 961, 996, 1162, 1269
Mox20I	TGGCCA	1 cut(s)	1056
Mph1103I	ATGCAT	2 cut(s)	1081, 1242
MroXI	GAANNNNTTC	1 cut(s)	1329
MscI	TGGCCA	1 cut(s)	1056
MseI	TTAA	8 cut(s)	23, 234, 393, 681, 800, 911, 1338, 1427
MslI	CAYNNNNRTG	3 cut(s)	647, 1245, 1428
Msp20I	TGGCCA	1 cut(s)	1056
MunI	CAATTG	6 cut(s)	86, 328, 602, 720, 1404, 1551
Mva1269I	GAATGC	2 cut(s)	520, 568
MwoI	GCNNNNNNNGC	2 cut(s)	544, 1169
NdeII	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
NlaIV	GGNNCC	1 cut(s)	1578
NsiI	ATGCAT	2 cut(s)	1081, 1242
NspI	RCATGY	2 cut(s)	551, 770
PagI	TCATGA	1 cut(s)	1191
PciI	ACATGT	1 cut(s)	766
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	2 cut(s)	520, 568
PdmI	GAANNNNTTC	1 cut(s)	1329
PfeI	GAWTC	2 cut(s)	716, 1447
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	730, 847, 995
PleI	GAGTC	5 cut(s)	88, 130, 418, 681, 746
PpsI	GAGTC	5 cut(s)	88, 130, 418, 681, 746
PscI	ACATGT	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	710
PspN4I	GGNNCC	1 cut(s)	1578
PspPI	GGNCC	1 cut(s)	1577
PsuI	RGATCY	1 cut(s)	1616
RsaI	GTAC	4 cut(s)	940, 1132, 1483, 1559
RsaNI	GTAC	4 cut(s)	939, 1131, 1482, 1558
RseI	CAYNNNNRTG	3 cut(s)	647, 1245, 1428
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	8 cut(s)	23, 234, 393, 681, 800, 911, 1338, 1427
SatI	GCNGC	3 cut(s)	729, 846, 994
Sau3AI	GATC	7 cut(s)	434, 883, 1018, 1243, 1303, 1357, 1616
Sau96I	GGNCC	1 cut(s)	1577
ScaI	AGTACT	1 cut(s)	1559
SchI	GAGTC	5 cut(s)	89, 130, 419, 682, 746
SfaNI	GCATC	1 cut(s)	1227
SmiI	ATTTAAAT	1 cut(s)	1428
SmiMI	CAYNNNNRTG	3 cut(s)	647, 1245, 1428
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SsiI	CCGC	3 cut(s)	447, 738, 1643
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	407
SwaI	ATTTAAAT	1 cut(s)	1428
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	2 cut(s)	651, 786
TaqI	TCGA	2 cut(s)	334, 905
TatI	WGTACW	3 cut(s)	938, 1481, 1557
TfiI	GAWTC	2 cut(s)	716, 1447
Tru1I	TTAA	8 cut(s)	23, 234, 393, 681, 800, 911, 1338, 1427
Tru9I	TTAA	8 cut(s)	23, 234, 393, 681, 800, 911, 1338, 1427
TscAI	CASTG	3 cut(s)	1064, 1382, 1424
TseI	GCWGC	3 cut(s)	728, 845, 993
TspDTI	ATGAA	8 cut(s)	522, 659, 783, 933, 960, 977, 1139, 1208
TspRI	CASTG	3 cut(s)	1064, 1382, 1424
Van91I	CCANNNNNTGG	1 cut(s)	112
XapI	RAATTY	5 cut(s)	172, 178, 279, 476, 789
XceI	RCATGY	2 cut(s)	551, 770
XmnI	GAANNNNTTC	1 cut(s)	1329
XspI	CTAG	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	1559
Zsp2I	ATGCAT	2 cut(s)	1081, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.