RchiOBHm_Chr5g0081041

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001893
Physical Location & Seq
Reverse (-)
87060405 .. 87061601
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35531

Sequence Viewer

Length: 873 bp
ATGAACACCGTGCGCAAATGGTCTGCTGCAATTTTTCTTGCATTAATCTCAAGTTGCCTACATGTTACTGATCATAAGCAAAAGTTTGGGAATATCGCAAGACTTGTTAAGGTGATGTGTCGTAGCAAAAGCACCATTGTCAAAGGAACCTGTGGGGTTATCTTGGGGTTTTCTTGCCATGATCTTCTTAGCAGGGCTGATGCTGCTGATAATTATAGCACTGAAACAGACTCAGAAAAGATGTCAGAAAGGAACTTGCTTGGTGACATAGGTAAGGCATTATTAGGTATGAGAGTTTGGCATAATTATTTTCCACCTAGCAGATATGATATAGATAAAAGTATAACTGCTAAGTTGTCAAATGAGAACTGTGATAACTCTCTCAAAGATATCGGGGGTATTGCTGGACTTGTTCTTGGTTTGGCGAGTTCTATTGGTGCATTGCACAATGCTGGGGTGCATGATGCTATTTTAAAGATAAAAGATATTGTGATATCATGGGTTCAGCATATGAATATACTAGTTCAAGGCTCATTCCATCATCTTCTTCAATGGGGTATCACATTGTTCATCTTCTACCTTGAGTTATTAATGCTTGTATTATTCTCTGATGAGGCCACGTTTCGAGAAGTTCAGGGGAGGAAGATGGAATTGCATCAAGCAATTCTTAAAATGGAGCAAAGAGGTAGTGCTGATGGTATCCTTCAGGTCCAAGCTGATTGTATACAATATGATCTTGAGGAGCTAATAAAGGCTCTTACTGGACGTTGCAAGAAACATGGGCTAGACATGAAGTTAGCTGCAACAATTGAGCTTCCAATTGGTTGGCAACCTGATATTCAAGACGGAACATCTGTTTGGGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

290

Amino Acids

32.28

Weight (kDa)

6.25

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
AccI GTMKAC 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 689
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 3 cut(s) 527, 551, 842
AhlI ACTAGT 1 cut(s) 520
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AluBI AGCT 4 cut(s) 716, 745, 800, 814
AluI AGCT 4 cut(s) 716, 745, 800, 814
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 3 cut(s) 26, 203, 800
AseI ATTAAT 2 cut(s) 44, 590
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 709
AsuHPI GGTGA 2 cut(s) 124, 275
AvaII GGWCC 1 cut(s) 709
BbvI GCAGC 3 cut(s) 13, 190, 787
BccI CCATC 3 cut(s) 546, 640, 689
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 1 cut(s) 70
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 3 cut(s) 318, 521, 785
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 3 cut(s) 27, 204, 801
BlsI GCNGC 3 cut(s) 28, 205, 802
Bme18I GGWCC 1 cut(s) 709
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 3 cut(s) 190, 454, 664
BpuEI CTTGAG 3 cut(s) 34, 602, 758
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 440
BseGI GGATG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 1 cut(s) 755
BseXI GCAGC 3 cut(s) 13, 190, 787
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 617
BsnI GGCC 1 cut(s) 617
Bsp143I GATC 3 cut(s) 70, 181, 733
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 766
BssMI GATC 3 cut(s) 70, 181, 733
BssNAI GTATAC 1 cut(s) 725
Bst1107I GTATAC 1 cut(s) 725
Bst4CI ACNGT 2 cut(s) 10, 371
BstDEI CTNAG 3 cut(s) 188, 232, 351
BstF5I GGATG 1 cut(s) 868
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 3 cut(s) 73, 184, 736
BstMBI GATC 3 cut(s) 70, 181, 733
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 13, 190, 787
BstXI CCANNNNNNTGG 1 cut(s) 825
BstZ17I GTATAC 1 cut(s) 725
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 617
BtsCI GGATG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 709
CviAII CATG 6 cut(s) 62, 179, 461, 498, 779, 790
CviJI RGCY 9 cut(s) 197, 531, 617, 716, 745, 755, 784, 800, 814
CviKI_1 RGCY 9 cut(s) 197, 531, 617, 716, 745, 755, 784, 800, 814
DdeI CTNAG 3 cut(s) 188, 232, 351
DpnI GATC 3 cut(s) 72, 183, 735
DpnII GATC 3 cut(s) 70, 181, 733
DraI TTTAAA 1 cut(s) 474
Eco32I GATATC 2 cut(s) 391, 495
Eco47I GGWCC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 689
EcoRV GATATC 2 cut(s) 391, 495
FaeI CATG 6 cut(s) 65, 182, 464, 501, 782, 793
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FatI CATG 6 cut(s) 61, 178, 460, 497, 778, 789
FauNDI CATATG 1 cut(s) 510
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 3 cut(s) 27, 204, 801
Fsp4HI GCNGC 3 cut(s) 27, 204, 801
FspBI CTAG 3 cut(s) 318, 521, 785
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 27, 204, 801
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 1 cut(s) 617
HhaI GCGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 65, 182, 464, 501, 782, 793
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 124, 275
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 3 cut(s) 235, 247, 610
Hpy188III TCNNGA 3 cut(s) 626, 737, 842
Hpy8I GTNNAC 1 cut(s) 725
HpyAV CCTTC 1 cut(s) 713
HpyCH4III ACNGT 2 cut(s) 10, 371
HpyCH4IV ACGT 2 cut(s) 620, 766
HpyCH4V TGCA 8 cut(s) 29, 41, 440, 445, 460, 655, 771, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 188, 232, 351
HpySE526I ACGT 2 cut(s) 620, 766
Hsp92II CATG 6 cut(s) 65, 182, 464, 501, 782, 793
HspAI GCGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 70, 181, 733
LmnI GCTCC 2 cut(s) 676, 742
LpnPI CCDG 8 cut(s) 163, 178, 390, 438, 620, 692, 747, 846
Lsp1109I GCAGC 3 cut(s) 13, 190, 787
LweI GCATC 3 cut(s) 190, 454, 664
MaeI CTAG 3 cut(s) 318, 521, 785
MaeII ACGT 2 cut(s) 620, 766
MaeIII GTNAC 2 cut(s) 64, 263
MalI GATC 3 cut(s) 72, 183, 735
MboI GATC 3 cut(s) 70, 181, 733
MboII GAAGA 5 cut(s) 176, 536, 539, 565, 655
MfeI CAATTG 2 cut(s) 807, 819
MluCI AATT 7 cut(s) 30, 211, 304, 650, 663, 807, 819
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 4 cut(s) 607, 633, 677, 733
MseI TTAA 5 cut(s) 44, 108, 473, 590, 669
MunI CAATTG 2 cut(s) 807, 819
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeI CATATG 1 cut(s) 510
NdeII GATC 3 cut(s) 70, 181, 733
NlaIII CATG 6 cut(s) 65, 182, 464, 501, 782, 793
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 263
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 65
PciI ACATGT 1 cut(s) 61
PkrI GCNGC 3 cut(s) 28, 205, 802
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PscI ACATGT 1 cut(s) 61
PshBI ATTAAT 2 cut(s) 44, 590
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 709
SaqAI TTAA 5 cut(s) 44, 108, 473, 590, 669
SatI GCNGC 3 cut(s) 27, 204, 801
Sau3AI GATC 3 cut(s) 70, 181, 733
Sau96I GGNCC 1 cut(s) 709
SchI GAGTC 1 cut(s) 224
SfaNI GCATC 3 cut(s) 190, 454, 664
SinI GGWCC 1 cut(s) 709
SmlI CTYRAG 3 cut(s) 49, 581, 737
SmoI CTYRAG 3 cut(s) 49, 581, 737
SpeI ACTAGT 1 cut(s) 520
Sse9I AATT 7 cut(s) 30, 211, 304, 650, 663, 807, 819
SspMI CTAG 3 cut(s) 318, 521, 785
TaaI ACNGT 2 cut(s) 10, 371
TaiI ACGT 2 cut(s) 623, 769
TaqI TCGA 1 cut(s) 625
TasI AATT 7 cut(s) 30, 211, 304, 650, 663, 807, 819
Tru1I TTAA 5 cut(s) 44, 108, 473, 590, 669
Tru9I TTAA 5 cut(s) 44, 108, 473, 590, 669
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 26, 203, 800
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 17, 527, 559, 806
TspGWI ACGGA 1 cut(s) 861
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 709
VspI ATTAAT 2 cut(s) 44, 590
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 724
XspI CTAG 3 cut(s) 318, 521, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.