Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

4364504 .. 4368321

Gene Structure 3818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGAAGACTCCAGACAAAATGAAAGATGGAGATGATTCTGGATTAGAAACAAACAGTATTCAAAAGGGATTCACTTTGGGATTACACTTTTGCCTCTCGGTTATTGAAAGGGTTTTCATATTTTTGTTTTTGCAAGCAAACGAAGAGCGGAGTTTTGCAAGCGATGGAAGTCTGGCTTTATATATAGAGATTAAAGCCAAAGTAGCCACCGAGGCCTCTCCATTTTCATTGCTTCAGTCTCTCCAAACTAAAAACTCATTCTCTCAGTTGCAAGGGTGGTACAACAAATTACAAAGAAATGACGTTTTGGCAGAGTCTGAGGAAAGTTCAGACTTCTTAGACATGAGGCAAAATGTTGGTTGCATAGCACATATCTGTTCAAATCTGGCAACTGTCGTATCTCAAGAACAAATAAGCATGTGGTTTACTGGTGAGAAAAGTTCTGTGCAAGCCGGGTTCAAATCTTCTTCATTTGCTTCTGAGATCAACATCGGCTCAAACCCAGACTCCATTACAGATTTATTAGTTGAGGCAACAAAATTAGAGCTCGTTGGATGTCTACACGATATGCCGTTGCAATACACCGAGCCAAGGATGAAGAATGGTATCAGGATCCCACTGAACAACTATCCTGGCAGGAAGTCAAATGGCTTCAGTTATAAGAGATGGAGACTCTATTTCCGTTCAACTTCACATACCATGGCCAGGCTTTGCCATGGTCCACAAAGCCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

246

Amino Acids

27.63

Weight (kDa)

6.96

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	562
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	610, 623
AcoI	YGGCCR	1 cut(s)	705
AcuI	CTGAAG	2 cut(s)	221, 640
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	594, 708
AgsI	TTSAA	5 cut(s)	65, 110, 384, 463, 690
AjnI	CCWGG	2 cut(s)	634, 707
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	246, 667
AlwI	GGATC	2 cut(s)	610, 623
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	216, 705
AspS9I	GGNCC	1 cut(s)	722
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	722
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BalI	TGGCCA	1 cut(s)	707
BamHI	GGATCC	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	552
BccI	CCATC	3 cut(s)	23, 161, 663
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	636, 709
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	246, 667
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme1390I	CCNGG	3 cut(s)	457, 636, 709
Bme18I	GGWCC	1 cut(s)	722
BmgT120I	GGNCC	1 cut(s)	722
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	3 cut(s)	457, 636, 709
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	213, 593, 702, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	594, 708
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	636, 709
BseDI	CCNNGG	4 cut(s)	213, 593, 702, 718
BseGI	GGATG	2 cut(s)	563, 603
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	594, 708
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	3 cut(s)	281, 312, 474
BseNI	ACTGG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	218, 707
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	594, 708
BsmAI	GTCTC	2 cut(s)	246, 667
BsnI	GGCC	2 cut(s)	218, 707
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	486, 615
Bsp19I	CCATGG	2 cut(s)	702, 718
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	218, 707
BspCNI	CTCAG	3 cut(s)	280, 313, 475
BspLI	GGNNCC	1 cut(s)	617
BspPI	GGATC	2 cut(s)	610, 623
BspQI	GCTCTTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	213, 593, 702, 718
BssMI	GATC	2 cut(s)	486, 615
BssT1I	CCWWGG	3 cut(s)	593, 702, 718
Bst2UI	CCWGG	2 cut(s)	636, 709
Bst4CI	ACNGT	2 cut(s)	59, 397
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	138, 163, 453
BstDEI	CTNAG	4 cut(s)	267, 321, 340, 483
BstDSI	CCRYGG	2 cut(s)	702, 718
BstF5I	GGATG	2 cut(s)	563, 603
BstKTI	GATC	2 cut(s)	489, 618
BstMAI	GTCTC	2 cut(s)	246, 667
BstMBI	GATC	2 cut(s)	486, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstNI	CCWGG	2 cut(s)	636, 709
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	455, 634, 707
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	218, 707
BtgI	CCRYGG	2 cut(s)	702, 718
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	563, 603
BtsIMutI	CAGTG	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	138, 163, 453
CaiI	CAGNNNCTG	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	722
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	5 cut(s)	346, 421, 703, 719, 738
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	267, 321, 340, 483
DpnI	GATC	2 cut(s)	488, 617
DpnII	GATC	2 cut(s)	486, 615
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	3 cut(s)	593, 702, 718
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	722
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	221, 640
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	634, 707
EcoT14I	CCWWGG	3 cut(s)	593, 702, 718
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	3 cut(s)	593, 702, 718
FaeI	CATG	5 cut(s)	349, 424, 706, 722, 741
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	5 cut(s)	345, 420, 702, 718, 737
FblI	GTMKAC	1 cut(s)	562
FokI	GGATG	2 cut(s)	570, 610
FriOI	GRGCYC	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	218, 707
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	5 cut(s)	349, 424, 706, 722, 741
HinfI	GANTC	6 cut(s)	10, 38, 72, 317, 509, 675
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	429, 563, 725
Hpy188I	TCNGA	3 cut(s)	322, 334, 484
Hpy188III	TCNNGA	4 cut(s)	14, 42, 407, 613
Hpy8I	GTNNAC	3 cut(s)	429, 563, 725
HpyCH4III	ACNGT	2 cut(s)	59, 397
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	6 cut(s)	136, 161, 274, 366, 451, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpyF3I	CTNAG	4 cut(s)	267, 321, 340, 483
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	349, 424, 706, 722, 741
Kzo9I	GATC	2 cut(s)	486, 615
LguI	GCTCTTC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	306
MalI	GATC	2 cut(s)	488, 617
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	2 cut(s)	486, 615
MboII	GAAGA	5 cut(s)	19, 158, 459, 462, 613
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	552
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	2 cut(s)	290, 542
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	4 cut(s)	4, 326, 503, 669
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	6 cut(s)	107, 208, 229, 316, 342, 526
Mox20I	TGGCCA	1 cut(s)	707
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	707
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	457, 636, 709
MvaI	CCWGG	2 cut(s)	636, 709
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	2 cut(s)	702, 718
NdeII	GATC	2 cut(s)	486, 615
NlaIII	CATG	5 cut(s)	349, 424, 706, 722, 741
NlaIV	GGNNCC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	38, 72
PleI	GAGTC	4 cut(s)	4, 325, 503, 669
PpsI	GAGTC	4 cut(s)	4, 325, 503, 669
PsiI	TTATAA	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	634, 707
PspGI	CCWGG	2 cut(s)	634, 707
PspN4I	GGNNCC	1 cut(s)	617
PspPI	GGNCC	1 cut(s)	722
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	486, 615
Sau96I	GGNCC	1 cut(s)	722
SchI	GAGTC	4 cut(s)	4, 326, 503, 669
ScrFI	CCNGG	3 cut(s)	457, 636, 709
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	2 cut(s)	309, 552
SinI	GGWCC	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	2 cut(s)	290, 542
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	151
SstI	GAGCTC	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	3 cut(s)	455, 634, 707
StyI	CCWWGG	3 cut(s)	593, 702, 718
TaaI	ACNGT	2 cut(s)	59, 397
TaiI	ACGT	1 cut(s)	309
TasI	AATT	2 cut(s)	290, 542
TfiI	GAWTC	2 cut(s)	38, 72
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	627
TspDTI	ATGAA	5 cut(s)	38, 109, 219, 462, 614
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	722
XceI	RCATGY	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.