FvH4_4g15871

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19804182 .. 19806028
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15871.t1

Sequence Viewer

Length: 1734 bp
ATGATTGTTGCCAATATGAGCATTCTGGACAAAGGTGGGGGATTTGCTACTCATTGTATAATTGTTGATGTTCTTGACATGTCAACTGACCTTTTACCTTCTGCTACTTCTGTTCCTATGGAAATTTATGGAGAAGAGAGGAGTGTAGTCAAGACAGATTGTGGAGACTCGTCCAAAATGAATAGTTTGGGGCAGGGAACTAAACCATCATCTAATTCTTCAAATGCTAAACTATTGCCTCCCGATTGGTTGAGCAATGTTGTAAGCATTTTGGAAACTATACTTCAGAATGGGGACACTAGTTGGGTATTTGGAGAAAGAAAGGGGTTAGAAGCTGTCATGCAGTCGTTTATCTTGCCTTCAATGCCTCTTTATGTTTCAGTTGGTCAGAGTATATCTGTTGTGAGCTCTCTTGTTGATATGTATGCACACTGTGGAACTTTGATGAATGCATACATGTATAATTCTGCCGGAAACAAAAGTCTCAGTTTTTGGACTATTATGATCAATTTGTTTGGGATGCATGGTCAAAATTTATTCAAGAGGCTGCTGCTTGACCAAAAGAGTGTCCCTGATTATCTAATCTCTTTGGTTCAAGTCTTTGACATCAATGGTCAAATGGAAACTGATAAGGGGCTGGCGAACAATTCAGAGGAGATATGTTTGCTTATTGCAATTTTAATTATTCAATTGCATTTAAATGAAGGTATTGAGATATGCAAGGAATCAGATGTGATAATAGGAAGTGCACTTGAGTTTGAGAAATTGTGGAAAACAGGAACTGGTTCCAGTGTTTGCAGTTTTGCAGACCAAAAGAGTTTGGCCTCTTCACTGCAGAGACATCTTTCTGATAACCTCTCACAGCTTATTGAAAAGACATCGAGCAACTTGGAGATAGTTTCACTAATTCAGCAATGTCTATCAAGGAGGTTCTTAAGTGGTGAAGTTGCTGACTTTATCAAGAGCAATCCAGAGTTATCTTTTATGAGGTACTCTGCTGATTCACTTCATTCAAGAGATTATGACCTCTTCTACATGAGAAATATTAAAGCTCCAAAACAGATTATGGAAGCATTATCATCATCAGCAAATGGTAAAGCTGTGAAGGAGTATACAAATATTAGAATACGTGATGTTGCACTAGACACCCAGAGTCTGGCACTTGGATTTGAGTTGCTGTTTGCAAGTTTGAGTTTCATAAAAGTAGCGCGCATGGAAATGTTTGGCAATGTTCTGAACCAAGGGGTGAATTATAAGGATATAATTGTTTCAGAAGCTAGGAATCAAGGCCACAAGCTACATGACCAGGTGTTTGAATTTTCCTTCCAGCTCAACCATGCTAATGCTTGTGCAATATCAAGTAATTATGGTAATGGGGAGATAAGAAGGCTTGTGCAAGGGACTAATGAAACATGTTCTGCACATGCACATGCACATGCACATGCGATCATTCGAATGGGAAAGGCAGATTTTTCATTAGAAGAAATTGAACAGCTTTTGTTTCTGAATGTCAATTTCCAGTTCATTGAGGCTACTTGGGCATCAAAGCTAAATGGTGACTCTCTTGTTATAATGGGTGGGGATCTGTACAGACCTGTTACTATTGATCAGCTTGCTATTCTGAGGATTCAGATGTCTTGGTATGGAGCTGTTGATGCTACTCTTGCAATGTCTCTTGAATTTGAACTTGAGGAGAAGTTTCTGTTGGACTATGATTCTGTAAGTGAAACTTGA

Protein Analysis

578

Amino Acids

63.94

Weight (kDa)

5.03

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1254, 1571
AccB7I CCANNNNNTGG 1 cut(s) 1156
AccI GTMKAC 1 cut(s) 1112
AccII CGCG 1 cut(s) 1210
AclWI GGATC 1 cut(s) 1590
AcsI RAATTY 4 cut(s) 123, 532, 1316, 1679
AcuI CTGAAG 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 434
AfaI GTAC 2 cut(s) 992, 1589
AfiI CCNNNNNNNGG 1 cut(s) 1156
AflII CTTAAG 1 cut(s) 934
AflIII ACRYGT 3 cut(s) 78, 456, 1412
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 1 cut(s) 1305
AjuI GAANNNNNNNTTGG 2 cut(s) 1688, 1720
Alw21I GWGCWC 2 cut(s) 410, 751
Alw26I GTCTC 4 cut(s) 159, 488, 832, 1677
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 1 cut(s) 1590
AlwNI CAGNNNCTG 2 cut(s) 782, 1156
AoxI GGCC 2 cut(s) 822, 1288
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 2 cut(s) 547, 550
ApoI RAATTY 4 cut(s) 123, 532, 1316, 1679
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 2 cut(s) 1210, 1212
AsuHPI GGTGA 3 cut(s) 953, 1258, 1568
AsuII TTCGAA 1 cut(s) 1453
BaeGI GKGCMC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 410, 751
BbvI GCAGC 2 cut(s) 534, 537
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 1307
BclI TGATCA 2 cut(s) 504, 1606
BcoDI GTCTC 4 cut(s) 159, 488, 832, 1677
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 3 cut(s) 300, 1142, 1278
BfmI CTRYAG 1 cut(s) 833
BfrI CTTAAG 1 cut(s) 934
BisI GCNGC 2 cut(s) 548, 551
BlsI GCNGC 2 cut(s) 549, 552
Bme1390I CCNGG 1 cut(s) 1307
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 1307
BmsI GCATC 3 cut(s) 510, 1550, 1645
Bpu14I TTCGAA 1 cut(s) 1453
BpuEI CTTGAG 2 cut(s) 773, 1709
BsaAI YACGTR 1 cut(s) 1130
BsaJI CCNNGG 1 cut(s) 1240
Bsc4I CCNNNNNNNGG 1 cut(s) 1156
Bse1I ACTGG 3 cut(s) 787, 789, 1519
Bse3DI GCAATG 4 cut(s) 262, 920, 1234, 1674
BseBI CCWGG 1 cut(s) 1307
BseDI CCNNGG 1 cut(s) 1240
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 1156
BseMI GCAATG 4 cut(s) 262, 920, 1234, 1674
BseMII CTCAG 2 cut(s) 499, 1613
BseNI ACTGG 3 cut(s) 787, 789, 1519
BsePI GCGCGC 1 cut(s) 1208
BseRI GAGGAG 3 cut(s) 154, 668, 1706
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 2 cut(s) 534, 537
BsgI GTGCAG 1 cut(s) 1404
Bsh1236I CGCG 1 cut(s) 1210
BshFI GGCC 2 cut(s) 824, 1290
BsiHKAI GWGCWC 2 cut(s) 410, 751
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 3 cut(s) 308, 554, 1414
BslI CCNNNNNNNGG 1 cut(s) 1156
BsmAI GTCTC 4 cut(s) 159, 488, 832, 1677
BsmFI GGGAC 3 cut(s) 308, 554, 1414
BsmI GAATGC 2 cut(s) 21, 454
BsnI GGCC 2 cut(s) 824, 1290
Bsp119I TTCGAA 1 cut(s) 1453
Bsp1286I GDGCHC 2 cut(s) 410, 751
Bsp1407I TGTACA 1 cut(s) 1587
Bsp143I GATC 4 cut(s) 504, 1446, 1582, 1606
BspANI GGCC 2 cut(s) 824, 1290
BspCNI CTCAG 2 cut(s) 498, 1614
BspFNI CGCG 1 cut(s) 1210
BspLI GGNNCC 1 cut(s) 787
BspMAI CTGCAG 1 cut(s) 837
BspPI GGATC 1 cut(s) 1590
BspT104I TTCGAA 1 cut(s) 1453
BspTI CTTAAG 1 cut(s) 934
BsrDI GCAATG 4 cut(s) 262, 920, 1234, 1674
BsrGI TGTACA 1 cut(s) 1587
BsrI ACTGG 3 cut(s) 787, 789, 1519
BssECI CCNNGG 1 cut(s) 1240
BssHII GCGCGC 1 cut(s) 1208
BssMI GATC 4 cut(s) 504, 1446, 1582, 1606
BssNAI GTATAC 1 cut(s) 1113
BssT1I CCWWGG 1 cut(s) 1240
Bst1107I GTATAC 1 cut(s) 1113
Bst2UI CCWGG 1 cut(s) 1307
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 3 cut(s) 129, 832, 1034
BstAFI CTTAAG 1 cut(s) 934
BstAUI TGTACA 1 cut(s) 1587
BstBAI YACGTR 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 1453
BstC8I GCNNGC 3 cut(s) 639, 1210, 1614
BstDEI CTNAG 2 cut(s) 485, 1622
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 1210
BstHHI GCGC 2 cut(s) 1210, 1212
BstKTI GATC 4 cut(s) 507, 1449, 1585, 1609
BstMAI GTCTC 4 cut(s) 159, 488, 832, 1677
BstMBI GATC 4 cut(s) 504, 1446, 1582, 1606
BstMWI GCNNNNNNNGC 4 cut(s) 364, 1538, 1655, 1664
BstNI CCWGG 1 cut(s) 1307
BstNSI RCATGY 7 cut(s) 82, 460, 1416, 1427, 1433, 1439, 1445
BstSCI CCNGG 1 cut(s) 1305
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 1 cut(s) 751
BstUI CGCG 1 cut(s) 1210
BstV1I GCAGC 2 cut(s) 534, 537
BstX2I RGATCY 1 cut(s) 1582
BstYI RGATCY 1 cut(s) 1582
BstZ17I GTATAC 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 824, 1290
BtsCI GGATG 1 cut(s) 525
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 3 cut(s) 430, 796, 830
Cac8I GCNNGC 3 cut(s) 639, 1210, 1614
CaiI CAGNNNCTG 2 cut(s) 782, 1156
CfoI GCGC 2 cut(s) 1210, 1212
CsiI ACCWGGT 1 cut(s) 1305
Csp6I GTAC 2 cut(s) 991, 1588
CviQI GTAC 2 cut(s) 991, 1588
DdeI CTNAG 2 cut(s) 485, 1622
DpnI GATC 4 cut(s) 506, 1448, 1584, 1608
DpnII GATC 4 cut(s) 504, 1446, 1582, 1606
DraI TTTAAA 1 cut(s) 699
DraIII CACNNNGTG 1 cut(s) 434
Eam1104I CTCTTC 3 cut(s) 129, 832, 1034
EarI CTCTTC 3 cut(s) 129, 832, 1034
Ecl136II GAGCTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 1240
Eco24I GRGCYC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 1305
EcoT14I CCWWGG 1 cut(s) 1240
EcoT22I ATGCAT 2 cut(s) 454, 525
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 1240
FalI AAGNNNNNCTT 1 cut(s) 1714
FaqI GGGAC 3 cut(s) 308, 554, 1414
FbaI TGATCA 2 cut(s) 504, 1606
FblI GTMKAC 1 cut(s) 1112
Fnu4HI GCNGC 2 cut(s) 548, 551
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 548, 551
FspBI CTAG 3 cut(s) 300, 1142, 1278
GlaI GCGC 2 cut(s) 1209, 1211
GluI GCNGC 2 cut(s) 548, 551
HaeIII GGCC 2 cut(s) 824, 1290
HapII CCGG 1 cut(s) 471
HhaI GCGC 2 cut(s) 1210, 1212
Hin6I GCGC 2 cut(s) 1208, 1210
HinP1I GCGC 2 cut(s) 1208, 1210
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 8 cut(s) 167, 725, 1001, 1153, 1282, 1559, 1627, 1715
HpaII CCGG 1 cut(s) 471
HphI GGTGA 3 cut(s) 953, 1258, 1568
Hpy166II GTNNAC 3 cut(s) 84, 749, 1113
Hpy188III TCNNGA 9 cut(s) 26, 74, 151, 242, 541, 961, 971, 1014, 1676
Hpy8I GTNNAC 3 cut(s) 84, 749, 1113
HpyAV CCTTC 6 cut(s) 108, 369, 698, 1099, 1333, 1380
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 1129
HpyF10VI GCNNNNNNNGC 4 cut(s) 364, 1538, 1655, 1664
HpyF3I CTNAG 2 cut(s) 485, 1622
HpySE526I ACGT 1 cut(s) 1129
HspAI GCGC 2 cut(s) 1208, 1210
Ksp22I TGATCA 2 cut(s) 504, 1606
Kzo9I GATC 4 cut(s) 504, 1446, 1582, 1606
LmnI GCTCC 2 cut(s) 1057, 1646
Lsp1109I GCAGC 2 cut(s) 534, 537
LweI GCATC 3 cut(s) 510, 1550, 1645
MabI ACCWGGT 1 cut(s) 1305
MaeI CTAG 3 cut(s) 300, 1142, 1278
MaeII ACGT 1 cut(s) 1129
MaeIII GTNAC 2 cut(s) 1556, 1597
MalI GATC 4 cut(s) 506, 1448, 1584, 1608
MboI GATC 4 cut(s) 504, 1446, 1582, 1606
MboII GAAGA 5 cut(s) 146, 210, 819, 1021, 1493
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 1582
MhlI GDGCHC 2 cut(s) 410, 751
MlyI GAGTC 3 cut(s) 161, 1162, 1553
MmeI TCCRAC 1 cut(s) 1686
Mph1103I ATGCAT 2 cut(s) 454, 525
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 4 cut(s) 680, 698, 935, 1047
MslI CAYNNNNRTG 7 cut(s) 699, 1217, 1341, 1428, 1434, 1440, 1454
MspCI CTTAAG 1 cut(s) 934
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 1307
MunI CAATTG 1 cut(s) 689
Mva1269I GAATGC 2 cut(s) 21, 454
MvaI CCWGG 1 cut(s) 1307
MvnI CGCG 1 cut(s) 1210
MwoI GCNNNNNNNGC 4 cut(s) 364, 1538, 1655, 1664
NdeII GATC 4 cut(s) 504, 1446, 1582, 1606
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 1 cut(s) 1556
NsiI ATGCAT 2 cut(s) 454, 525
NspI RCATGY 7 cut(s) 82, 460, 1416, 1427, 1433, 1439, 1445
NspV TTCGAA 1 cut(s) 1453
PauI GCGCGC 1 cut(s) 1208
PciI ACATGT 3 cut(s) 78, 456, 1412
PctI GAATGC 2 cut(s) 21, 454
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 5 cut(s) 725, 1001, 1282, 1627, 1715
PflMI CCANNNNNTGG 1 cut(s) 1156
PkrI GCNGC 2 cut(s) 549, 552
PleI GAGTC 3 cut(s) 161, 1161, 1553
PpsI GAGTC 3 cut(s) 161, 1161, 1553
Ppu21I YACGTR 1 cut(s) 1130
PscI ACATGT 3 cut(s) 78, 456, 1412
PsiI TTATAA 2 cut(s) 1254, 1571
Psp124BI GAGCTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 1305
PspGI CCWGG 1 cut(s) 1305
PspN4I GGNNCC 1 cut(s) 787
PstI CTGCAG 1 cut(s) 837
PstNI CAGNNNCTG 2 cut(s) 782, 1156
PsuI RGATCY 1 cut(s) 1582
PteI GCGCGC 1 cut(s) 1208
RsaI GTAC 2 cut(s) 992, 1589
RsaNI GTAC 2 cut(s) 991, 1588
RseI CAYNNNNRTG 7 cut(s) 699, 1217, 1341, 1428, 1434, 1440, 1454
SacI GAGCTC 1 cut(s) 410
SaqAI TTAA 4 cut(s) 680, 698, 935, 1047
SatI GCNGC 2 cut(s) 548, 551
Sau3AI GATC 4 cut(s) 504, 1446, 1582, 1606
SchI GAGTC 3 cut(s) 161, 1162, 1553
ScrFI CCNGG 1 cut(s) 1307
SduI GDGCHC 2 cut(s) 410, 751
SexAI ACCWGGT 1 cut(s) 1305
SfaNI GCATC 3 cut(s) 510, 1550, 1645
SfcI CTRYAG 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 1453
SmiI ATTTAAAT 1 cut(s) 699
SmiMI CAYNNNNRTG 7 cut(s) 699, 1217, 1341, 1428, 1434, 1440, 1454
SmlI CTYRAG 3 cut(s) 752, 934, 1688
SmoI CTYRAG 3 cut(s) 752, 934, 1688
SpeI ACTAGT 1 cut(s) 299
SspI AATATT 2 cut(s) 1045, 1120
SspMI CTAG 3 cut(s) 300, 1142, 1278
SstI GAGCTC 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 1305
StyI CCWWGG 1 cut(s) 1240
SwaI ATTTAAAT 1 cut(s) 699
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 1132
TaqI TCGA 2 cut(s) 881, 1453
TatI WGTACW 1 cut(s) 1587
TfiI GAWTC 5 cut(s) 725, 1001, 1282, 1627, 1715
Tru1I TTAA 4 cut(s) 680, 698, 935, 1047
Tru9I TTAA 4 cut(s) 680, 698, 935, 1047
TscAI CASTG 3 cut(s) 437, 796, 837
TseFI GTSAC 1 cut(s) 1556
TseI GCWGC 2 cut(s) 547, 550
Tsp45I GTSAC 1 cut(s) 1556
TspDTI ATGAA 8 cut(s) 194, 461, 717, 998, 1186, 1422, 1464, 1513
TspRI CASTG 3 cut(s) 437, 796, 837
Van91I CCANNNNNTGG 1 cut(s) 1156
Vha464I CTTAAG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 747
XapI RAATTY 4 cut(s) 123, 532, 1316, 1679
XceI RCATGY 7 cut(s) 82, 460, 1416, 1427, 1433, 1439, 1445
XmiI GTMKAC 1 cut(s) 1112
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 3 cut(s) 300, 1142, 1278
Zsp2I ATGCAT 2 cut(s) 454, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.