Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210450.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 711

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210450.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 710 bp

atgatatcttgttatgttcataatgggcctgcaagtgaggctcttgaactttgtcagctcatgaaagaagtaaatgttaaacttgatttccaggcttatgggatgcatggtcatggcaaggaagccattgatttattcaagaggatggaagaccaaaagattgttccagatcatattatgttttgggctcaagtcttttacattaagggtcaaatggaaactgatgatgggcttgcaaatcaattggggaagatatgtttgcttattgcaattgcaattaatcaattgcatttaaatgaagctgccgctttgtacaagggaatggacacaagtgcaattattcaattacattcaacgaattggttggtccagcctgagcatgaacactgcaaatggtctgctgcaatttttcttgcattaatctcaagttgcctacatgttaccaatcataagcaaaagtttgagaatatcgcaagacttgtcgaggtgttgtgtagtagcaaaagcatccttgtgaaaggagccggtgggattggcttggggttttcttgccaagatcttcttacttgggccaatgcttctgataattctagcatggaaacagacctagacaagctgttagaaagggacttgcttggtgacatagctaaggcattattatttatgatattctgggttagggggcttgatgctatttccaagataaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

236

Amino Acids

26.33

Weight (kDa)

5.9

Isoelectric Point (pI)

20.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	47, 139, 344, 354
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	4 cut(s)	58, 302, 616, 647
AluI	AGCT	4 cut(s)	58, 302, 616, 647
AoxI	GGCC	2 cut(s)	26, 570
ApeKI	GCWGC	2 cut(s)	302, 401
AseI	ATTAAT	2 cut(s)	279, 419
AspS9I	GGNCC	3 cut(s)	26, 367, 570
AsuHPI	GGTGA	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	289, 388
BccI	CCATC	2 cut(s)	139, 221
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	2 cut(s)	591, 608
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	3 cut(s)	303, 306, 402
BlsI	GCNGC	3 cut(s)	304, 307, 403
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	26, 367, 570
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	93, 516, 679
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	2 cut(s)	375, 648
BpuEI	CTTGAG	2 cut(s)	174, 409
Bse118I	RCCGGY	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	108, 150, 507
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	289, 388
BshFI	GGCC	2 cut(s)	28, 572
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	28, 572
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	169, 556
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	28, 572
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	524
BssMI	GATC	2 cut(s)	169, 556
Bst2UI	CCWGG	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	30, 234
BstDEI	CTNAG	2 cut(s)	375, 648
BstF5I	GGATG	3 cut(s)	108, 150, 507
BstKTI	GATC	2 cut(s)	172, 559
BstMBI	GATC	2 cut(s)	169, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	289, 388
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	28, 572
BtsCI	GGATG	3 cut(s)	108, 150, 507
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	30, 234
CciI	TCATGA	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	26, 367, 570
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	6 cut(s)	61, 107, 113, 380, 437, 595
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	375, 648
DpnI	GATC	2 cut(s)	171, 558
DpnII	GATC	2 cut(s)	169, 556
DraI	TTTAAA	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	6 cut(s)	64, 110, 116, 383, 440, 598
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	60, 106, 112, 379, 436, 594
Fnu4HI	GCNGC	3 cut(s)	303, 306, 402
FokI	GGATG	3 cut(s)	115, 157, 494
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	303, 306, 402
FspBI	CTAG	2 cut(s)	591, 608
GluI	GCNGC	3 cut(s)	303, 306, 402
HaeIII	GGCC	2 cut(s)	28, 572
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	6 cut(s)	64, 110, 116, 383, 440, 598
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	44, 61, 139, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	375, 648
Hsp92II	CATG	6 cut(s)	64, 110, 116, 383, 440, 598
Kzo9I	GATC	2 cut(s)	169, 556
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	8 cut(s)	42, 77, 104, 180, 383, 387, 538, 658
Lsp1109I	GCAGC	2 cut(s)	289, 388
LweI	GCATC	3 cut(s)	93, 516, 679
MaeI	CTAG	2 cut(s)	591, 608
MaeIII	GTNAC	2 cut(s)	439, 638
MalI	GATC	2 cut(s)	171, 558
MboI	GATC	2 cut(s)	169, 556
MboII	GAAGA	3 cut(s)	161, 262, 551
MfeI	CAATTG	3 cut(s)	242, 270, 284
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	9 cut(s)	242, 270, 276, 284, 336, 344, 358, 405, 586
MnlI	CCTC	3 cut(s)	31, 135, 478
Mph1103I	ATGCAT	1 cut(s)	108
MseI	TTAA	5 cut(s)	78, 204, 279, 293, 419
MslI	CAYNNNNRTG	3 cut(s)	111, 294, 512
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	3 cut(s)	242, 270, 284
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	169, 556
NlaIII	CATG	6 cut(s)	64, 110, 116, 383, 440, 598
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	638
NsiI	ATGCAT	1 cut(s)	108
NspI	RCATGY	1 cut(s)	440
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	304, 307, 403
PscI	ACATGT	1 cut(s)	436
PshBI	ATTAAT	2 cut(s)	279, 419
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	3 cut(s)	26, 367, 570
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	3 cut(s)	111, 294, 512
SaqAI	TTAA	5 cut(s)	78, 204, 279, 293, 419
SatI	GCNGC	3 cut(s)	303, 306, 402
Sau3AI	GATC	2 cut(s)	169, 556
Sau96I	GGNCC	3 cut(s)	26, 367, 570
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	60, 304, 489, 609, 618, 649
SfaNI	GCATC	3 cut(s)	93, 516, 679
SinI	GGWCC	1 cut(s)	367
SmiI	ATTTAAAT	1 cut(s)	294
SmiMI	CAYNNNNRTG	3 cut(s)	111, 294, 512
SmlI	CTYRAG	2 cut(s)	189, 424
SmoI	CTYRAG	2 cut(s)	189, 424
Sse9I	AATT	9 cut(s)	242, 270, 276, 284, 336, 344, 358, 405, 586
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	2 cut(s)	591, 608
StyD4I	CCNGG	1 cut(s)	90
SwaI	ATTTAAAT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	483
TasI	AATT	9 cut(s)	242, 270, 276, 284, 336, 344, 358, 405, 586
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	5 cut(s)	78, 204, 279, 293, 419
Tru9I	TTAA	5 cut(s)	78, 204, 279, 293, 419
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	2 cut(s)	302, 401
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	8, 77, 312, 396
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	2 cut(s)	279, 419
XceI	RCATGY	1 cut(s)	440
XspI	CTAG	2 cut(s)	591, 608
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.