Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011176.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

6057 .. 7070

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011176.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgctggaattgggagaagcatttacaacttgggaattgctacatacaaggggtggatgcagtgatagggaatgtcctggagttcttactgagaccaatagatgtgaagatgtggtggtgtttaaggacactgatgttggtggtgatcaatctaaattacatgcacacaacttatcaccaatgtcctacgagagtgactccaggcatgcagttgaacttggcaacggtgcttctttgctgcttcattattttttttgcaattaccatatcaatgctcgaggacatcaattgggagctgagatgatatcttcagatgttcctcttcttagtgtagatgaccttgaaaaccagcttgtcgaagtacttgatttgtataggctgaaagaggtactgagcttgggtggtgacttggatgatgaagcaggggcgctgcccagcctgagttcatcgggacgctgcccggcatggtcatcggaggcgctgctccggcatgttgtctttgacatcattgacacccgaaggtgtcgttgggggagggcctgcaacagaaaagaaaaggcggcggagagcaatggaatgaggtctgaaccttttgtcttccaacctgcaaagcagttctcctccttgtttttccacgctgctgtgctccgttgtcctcctgtcgtcccccttctttttcacctcctaggctctttttatatgagacctaagagttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

239

Amino Acids

26.63

Weight (kDa)

5.55

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
AciI	CCGC	2 cut(s)	560, 563
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	363, 390
AgsI	TTSAA	2 cut(s)	215, 344
AjnI	CCWGG	2 cut(s)	76, 200
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	3 cut(s)	296, 352, 396
AluI	AGCT	3 cut(s)	296, 352, 396
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	86, 697
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	5 cut(s)	238, 430, 456, 481, 638
AspA2I	CCTAGG	1 cut(s)	685
AspLEI	GCGC	2 cut(s)	430, 481
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	4 cut(s)	155, 168, 416, 671
AvaI	CYCGRG	1 cut(s)	276
AvrII	CCTAGG	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	225, 417, 443, 468, 625
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	2 cut(s)	78, 202
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	86, 697
BfaI	CTAG	1 cut(s)	686
BfoI	RGCGCY	2 cut(s)	431, 482
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	6 cut(s)	239, 431, 457, 482, 561, 639
BlnI	CCTAGG	1 cut(s)	685
BlsI	GCNGC	6 cut(s)	240, 432, 458, 483, 562, 640
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	3 cut(s)	78, 202, 461
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	537
BmrFI	CCNGG	3 cut(s)	78, 202, 461
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	589
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	2 cut(s)	99, 184
BpuMI	CCSGG	1 cut(s)	461
BsaI	GGTCTC	2 cut(s)	86, 697
BsaJI	CCNNGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	78, 202
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	2 cut(s)	62, 418
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	4 cut(s)	81, 288, 383, 431
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	5 cut(s)	225, 417, 443, 468, 625
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	461, 487
BslFI	GGGAC	2 cut(s)	465, 650
BsmAI	GTCTC	2 cut(s)	86, 697
BsmFI	GGGAC	2 cut(s)	465, 650
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	2 cut(s)	86, 697
BsoBI	CYCGRG	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	2 cut(s)	560, 563
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	4 cut(s)	82, 289, 384, 432
BspMI	ACCTGC	1 cut(s)	613
BspTNI	GGTCTC	2 cut(s)	86, 697
BsrDI	GCAATG	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	2 cut(s)	78, 202
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	207, 541
BstDEI	CTNAG	6 cut(s)	90, 297, 326, 392, 440, 708
BstF5I	GGATG	2 cut(s)	62, 418
BstH2I	RGCGCY	2 cut(s)	431, 482
BstHHI	GCGC	2 cut(s)	430, 481
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	86, 697
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNI	CCWGG	2 cut(s)	78, 202
BstNSI	RCATGY	3 cut(s)	164, 209, 494
BstSCI	CCNGG	3 cut(s)	76, 200, 459
BstV1I	GCAGC	5 cut(s)	225, 417, 443, 468, 625
BstV2I	GAAGAC	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	62, 418
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 129
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	207, 541
CfoI	GCGC	2 cut(s)	430, 481
Cfr13I	GGNCC	1 cut(s)	537
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	362, 389
CviAII	CATG	4 cut(s)	161, 206, 465, 491
CviJI	RGCY	7 cut(s)	296, 352, 379, 396, 438, 539, 690
CviKI_1	RGCY	7 cut(s)	296, 352, 379, 396, 438, 539, 690
CviQI	GTAC	2 cut(s)	362, 389
DdeI	CTNAG	6 cut(s)	90, 297, 326, 392, 440, 708
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	685
Eco31I	GGTCTC	2 cut(s)	86, 697
Eco32I	GATATC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	76, 200
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	4 cut(s)	164, 209, 468, 494
FaiI	YATR	9 cut(s)	45, 162, 207, 267, 375, 466, 492, 699, 701
FaqI	GGGAC	2 cut(s)	465, 650
FatI	CATG	4 cut(s)	160, 205, 464, 490
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	6 cut(s)	239, 431, 457, 482, 561, 639
FokI	GGATG	2 cut(s)	69, 425
Fsp4HI	GCNGC	6 cut(s)	239, 431, 457, 482, 561, 639
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	2 cut(s)	429, 480
GluI	GCNGC	6 cut(s)	239, 431, 457, 482, 561, 639
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	99, 184
HaeII	RGCGCY	2 cut(s)	431, 482
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	2 cut(s)	461, 487
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	2 cut(s)	430, 481
Hin1II	CATG	4 cut(s)	164, 209, 468, 494
Hin6I	GCGC	2 cut(s)	428, 479
HinP1I	GCGC	2 cut(s)	428, 479
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	461, 487
HphI	GGTGA	4 cut(s)	155, 168, 416, 671
Hpy188I	TCNGA	3 cut(s)	313, 475, 586
Hpy188III	TCNNGA	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	513, 680
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	6 cut(s)	60, 164, 209, 258, 543, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
HpyF3I	CTNAG	6 cut(s)	90, 297, 326, 392, 440, 708
Hsp92II	CATG	4 cut(s)	164, 209, 468, 494
HspAI	GCGC	2 cut(s)	428, 479
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	293, 489, 651
Lsp1109I	GCAGC	5 cut(s)	225, 417, 443, 468, 625
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	194, 404
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	119, 300, 314, 589
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	5 cut(s)	8, 35, 155, 259, 287
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	9 cut(s)	272, 330, 379, 469, 528, 573, 631, 666, 692
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	461, 487
MspR9I	CCNGG	3 cut(s)	78, 202, 461
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	78, 202
MwoI	GCNNNNNNNGC	1 cut(s)	487
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	164, 209, 468, 494
NmuCI	GTSAC	2 cut(s)	194, 404
NspI	RCATGY	3 cut(s)	164, 209, 494
PaeI	GCATGC	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	240, 432, 458, 483, 562, 640
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	76, 200
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	76, 200
PspPI	GGNCC	1 cut(s)	537
PspXI	VCTCGAGB	1 cut(s)	276
RsaI	GTAC	2 cut(s)	363, 390
RsaNI	GTAC	2 cut(s)	362, 389
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	6 cut(s)	239, 431, 457, 482, 561, 639
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	537
ScaI	AGTACT	1 cut(s)	363
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	78, 202, 461
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	1 cut(s)	47
Sfr274I	CTCGAG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	5 cut(s)	8, 35, 155, 259, 287
SsiI	CCGC	2 cut(s)	560, 563
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	3 cut(s)	76, 200, 459
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	277, 357
TasI	AATT	5 cut(s)	8, 35, 155, 259, 287
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	67, 136
TseFI	GTSAC	2 cut(s)	194, 404
TseI	GCWGC	5 cut(s)	238, 430, 456, 481, 638
Tsp45I	GTSAC	2 cut(s)	194, 404
TspDTI	ATGAA	3 cut(s)	233, 432, 435
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	67, 136
XceI	RCATGY	3 cut(s)	164, 209, 494
XhoI	CTCGAG	1 cut(s)	276
XmaJI	CCTAGG	1 cut(s)	685
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.