Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8205326.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 580

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8205326.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggcagctttcttagatgaggttgtggaggaccctcgaattgaagtgggtacccatgactggaattcaattattcatgccttttgtaaagctgggcgactagaagatgcgaggaggacttttagaaggatggtattcttgcagtataaacctaatgaccagacatatttgtcattaattagtgggtatgtttctgtggagaaatacttttgtgttttgatgctgtggcatgaggtgaagagaaacatttcagttgatggagagaaggggcttaaatttgatcacaacatggttgatgcattcctgtatgctcttgttaagggaggcttttttgatgcagtaatgcaagtcgtcgagaaatctcaagagatgaaaatctttgtggataaatggaggtacaagcaggcattcatggaaacccataagaagcttaaagtgtcaaagttgagaaagaggagtttcaggaaaatggaagcacttgttgctttcaagaattgggctggtctcaatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

171

Amino Acids

20.14

Weight (kDa)

9.47

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	169
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	64, 275
AfaI	GTAC	2 cut(s)	52, 398
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	44, 69, 490
AluBI	AGCT	3 cut(s)	8, 92, 430
AluI	AGCT	3 cut(s)	8, 92, 430
Alw26I	GTCTC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	64, 275
AseI	ATTAAT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	247
Asp718I	GGTACC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	124, 251
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	33, 52
BmsI	GCATC	4 cut(s)	97, 210, 286, 325
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	374
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	2 cut(s)	127, 469
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	2 cut(s)	299, 407
Bso31I	GGTCTC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	33, 52
BspT107I	GGYRCC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	51, 397
CviAII	CATG	6 cut(s)	56, 77, 230, 289, 412, 513
CviJI	RGCY	6 cut(s)	8, 92, 271, 327, 430, 500
CviKI_1	RGCY	6 cut(s)	8, 92, 271, 327, 430, 500
CviQI	GTAC	2 cut(s)	51, 397
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DrdI	GACNNNNNNGTC	1 cut(s)	169
DseDI	GACNNNNNNGTC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	64
EcoT22I	ATGCAT	2 cut(s)	301, 514
FaeI	CATG	6 cut(s)	59, 80, 233, 292, 415, 516
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	6 cut(s)	55, 76, 229, 288, 411, 512
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	96
Hin1II	CATG	6 cut(s)	59, 80, 233, 292, 415, 516
HindIII	AAGCTT	1 cut(s)	428
HphI	GGTGA	1 cut(s)	247
Hpy188III	TCNNGA	4 cut(s)	355, 365, 463, 490
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	120, 259
HpyCH4V	TGCA	5 cut(s)	142, 299, 338, 346, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	6 cut(s)	59, 80, 233, 292, 415, 516
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	46, 78, 173, 317, 389, 448, 486
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	4 cut(s)	97, 210, 286, 325
MaeI	CTAG	1 cut(s)	101
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	116, 250
MluCI	AATT	6 cut(s)	39, 64, 69, 177, 275, 493
MnlI	CCTC	9 cut(s)	13, 22, 45, 105, 108, 226, 317, 387, 447
Mph1103I	ATGCAT	2 cut(s)	301, 514
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	4 cut(s)	176, 273, 318, 432
Mva1269I	GAATGC	2 cut(s)	299, 407
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	6 cut(s)	59, 80, 233, 292, 415, 516
NlaIV	GGNNCC	2 cut(s)	33, 52
NsiI	ATGCAT	2 cut(s)	301, 514
PctI	GAATGC	2 cut(s)	299, 407
PdmI	GAANNNNTTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	33, 52
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	52, 398
RsaNI	GTAC	2 cut(s)	51, 397
SaqAI	TTAA	4 cut(s)	176, 273, 318, 432
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	7 cut(s)	10, 24, 94, 154, 237, 398, 432
SfaNI	GCATC	4 cut(s)	97, 210, 286, 325
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	6 cut(s)	39, 64, 69, 177, 275, 493
SspMI	CTAG	1 cut(s)	101
TaqI	TCGA	2 cut(s)	37, 354
TasI	AATT	6 cut(s)	39, 64, 69, 177, 275, 493
Tru1I	TTAA	4 cut(s)	176, 273, 318, 432
Tru9I	TTAA	4 cut(s)	176, 273, 318, 432
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	65, 386, 400
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	2 cut(s)	64, 275
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	2 cut(s)	301, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.