RLG00000022150

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001893
Physical Location & Seq
Forward (+)
81336085 .. 81337239
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022150

Sequence Viewer

Length: 507 bp
ATGTGTAGTAGCAAAAGCACCCTTGTCAAAGGAGCCTGTGGGGTTGGCCTGGGGTTTTCTTGCCAAGATCTTCTTACCAGGGGTGATTCCGCTGATAATTCTAGCGCAGTGAAAGACTCAGACAAGTTGTCAGAAAGGGATTTGCTTGTCCATTTCGGAGGGATGCTTGGAGAGTTGGACTTGTTAACGCTATGGGAGCAGGTGCTGGGATCGTGCTTGACAGGCTTCCGCTTACCTAAGCGCATGCAGCTTTTGAACAGAAGGTGTAGATCAGTTACCTGCTCTACAAGTGTTATAGACGAGGCTTCTCTTGATTCTCTTGAGTACATATCGCGTCATAAAAAATGCAGGGAGGTGCTGTTGTCCTTGTTAGCTGCAAGGCAATTGGCTGCTGTGCTAGGAGTAGATCAGTTAAATTCTTTGAAGGAGTGGTCTGAGGCGGTTACATGCTTAGGAAAGGCTCGGAAACATCTGTTGGAGGATCCCCTACAGGAAAGCGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

169

Amino Acids

18.36

Weight (kDa)

6.81

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 190
Acc36I ACCTGC 2 cut(s) 190, 287
AccII CGCG 1 cut(s) 334
AciI CCGC 3 cut(s) 90, 229, 440
AclWI GGATC 3 cut(s) 217, 476, 489
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 2 cut(s) 256, 424
AhdI GACNNNNNGTC 1 cut(s) 127
AjnI CCWGG 2 cut(s) 48, 77
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 2 cut(s) 250, 374
AluI AGCT 2 cut(s) 250, 374
AlwI GGATC 3 cut(s) 217, 476, 489
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 247, 374, 389
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 2 cut(s) 107, 243
AsuHPI GGTGA 1 cut(s) 95
BamHI GGATCC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 259, 361, 376
BciT130I CCWGG 2 cut(s) 50, 79
BfaI CTAG 2 cut(s) 102, 398
BfmI CTRYAG 1 cut(s) 488
BfuAI ACCTGC 2 cut(s) 190, 287
BglII AGATCT 1 cut(s) 67
BisI GCNGC 3 cut(s) 248, 375, 390
BlsI GCNGC 3 cut(s) 249, 376, 391
Bme1390I CCNGG 2 cut(s) 50, 79
BmeRI GACNNNNNGTC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 34, 483
BmrFI CCNGG 2 cut(s) 50, 79
BmsI GCATC 1 cut(s) 153
Bpu10I CCTNAGC 2 cut(s) 237, 451
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 49, 78
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
BseBI CCWGG 2 cut(s) 50, 79
BseDI CCNNGG 2 cut(s) 49, 78
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 132, 426
BseXI GCAGC 3 cut(s) 259, 361, 376
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 48
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 5 cut(s) 67, 209, 269, 406, 481
BspACI CCGC 3 cut(s) 90, 229, 440
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 131, 427
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 34, 483
BspMI ACCTGC 2 cut(s) 190, 287
BspPI GGATC 3 cut(s) 217, 476, 489
BssECI CCNNGG 2 cut(s) 49, 78
BssMI GATC 5 cut(s) 67, 209, 269, 406, 481
Bst2UI CCWGG 2 cut(s) 50, 79
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 4 cut(s) 118, 237, 435, 451
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 2 cut(s) 107, 243
BstKTI GATC 5 cut(s) 70, 212, 272, 409, 484
BstMBI GATC 5 cut(s) 67, 209, 269, 406, 481
BstMWI GCNNNNNNNGC 3 cut(s) 196, 222, 247
BstNI CCWGG 2 cut(s) 50, 79
BstNSI RCATGY 2 cut(s) 247, 450
BstSCI CCNGG 2 cut(s) 48, 77
BstSFI CTRYAG 1 cut(s) 488
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 259, 361, 376
BstX2I RGATCY 2 cut(s) 67, 481
BstYI RGATCY 2 cut(s) 67, 481
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 2 cut(s) 190, 287
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 2 cut(s) 107, 243
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 244, 447
CviJI RGCY 8 cut(s) 35, 48, 225, 250, 305, 374, 389, 461
CviKI_1 RGCY 8 cut(s) 35, 48, 225, 250, 305, 374, 389, 461
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 4 cut(s) 118, 237, 435, 451
DpnI GATC 5 cut(s) 69, 211, 271, 408, 483
DpnII GATC 5 cut(s) 67, 209, 269, 406, 481
DriI GACNNNNNGTC 1 cut(s) 127
Eam1105I GACNNNNNGTC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 48, 77
FaeI CATG 2 cut(s) 247, 450
FaiI YATR 7 cut(s) 193, 245, 296, 329, 339, 448, 502
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 2 cut(s) 243, 446
Fnu4HI GCNGC 3 cut(s) 248, 375, 390
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 248, 375, 390
FspBI CTAG 2 cut(s) 102, 398
GlaI GCGC 2 cut(s) 106, 242
GluI GCNGC 3 cut(s) 248, 375, 390
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 48
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 107, 243
Hin1II CATG 2 cut(s) 247, 450
Hin6I GCGC 2 cut(s) 105, 241
HinP1I GCGC 2 cut(s) 105, 241
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 3 cut(s) 86, 116, 314
HpaI GTTAAC 1 cut(s) 186
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 5 cut(s) 121, 133, 158, 436, 465
Hpy188III TCNNGA 2 cut(s) 311, 320
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 255, 418
HpyCH4V TGCA 3 cut(s) 247, 348, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 222, 247
HpyF3I CTNAG 4 cut(s) 118, 237, 435, 451
Hsp92II CATG 2 cut(s) 247, 450
HspAI GCGC 2 cut(s) 105, 241
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 5 cut(s) 67, 209, 269, 406, 481
LmnI GCTCC 2 cut(s) 32, 196
Lsp1109I GCAGC 3 cut(s) 259, 361, 376
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 102, 398
MaeIII GTNAC 2 cut(s) 274, 442
MalI GATC 5 cut(s) 69, 211, 271, 408, 483
MboI GATC 5 cut(s) 67, 209, 269, 406, 481
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 2 cut(s) 67, 481
MluCI AATT 3 cut(s) 97, 383, 415
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 2 cut(s) 156, 456
MnlI CCTC 5 cut(s) 152, 295, 346, 430, 472
MseI TTAA 2 cut(s) 185, 413
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 50, 79
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 2 cut(s) 50, 79
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 196, 222, 247
NdeII GATC 5 cut(s) 67, 209, 269, 406, 481
NlaIII CATG 2 cut(s) 247, 450
NlaIV GGNNCC 2 cut(s) 34, 483
NspI RCATGY 2 cut(s) 247, 450
PaeI GCATGC 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 86, 314
PkrI GCNGC 3 cut(s) 249, 376, 391
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 48, 77
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 48, 77
PspN4I GGNNCC 2 cut(s) 34, 483
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 2 cut(s) 67, 481
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 185, 413
SatI GCNGC 3 cut(s) 248, 375, 390
Sau3AI GATC 5 cut(s) 67, 209, 269, 406, 481
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 50, 79
SetI ASST 7 cut(s) 204, 238, 252, 266, 281, 357, 376
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 247
Sse9I AATT 3 cut(s) 97, 383, 415
SsiI CCGC 3 cut(s) 90, 229, 440
SspMI CTAG 2 cut(s) 102, 398
StyD4I CCNGG 2 cut(s) 48, 77
TasI AATT 3 cut(s) 97, 383, 415
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 86, 314
Tru1I TTAA 2 cut(s) 185, 413
Tru9I TTAA 2 cut(s) 185, 413
TscAI CASTG 1 cut(s) 114
TseI GCWGC 3 cut(s) 247, 374, 389
TspRI CASTG 1 cut(s) 114
XapI RAATTY 1 cut(s) 415
XceI RCATGY 2 cut(s) 247, 450
XspI CTAG 2 cut(s) 102, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.