RLG00000029523

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001893
Physical Location & Seq
Reverse (-)
39847936 .. 39849048
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029523

Sequence Viewer

Length: 666 bp
ATGAATGCTCAGAGAGGTATTTTGGGGCTTGATGTGCATGTGCCAATATTGACTGCTCTTTGCAAAGTGCATAGAACTGCTGAAGCCACTCAACTGGTTATGGATATTAGTAACTCGGAGCTTAAGTTGGACATGGAAACATATGATACTCTAATAGAAGCATCTATGTCTAGTCAAGATTTTCAATCGGCTTTTGATGGGGCATTATGTGACTTGATTAAGCTTTATGTCATGATTTATAGTGCTTTCAATGATAATGCTGGGAATTTGCTTCATGATTACACATATGGGATAATGGAATCTGTTGCGAGCTCTCTTGTAGATATGTATGCCCACTTTGGAACTTTGAAGAATGCATACAACATTTATGATTGTCAGCAAAATCACCCTGTGAAAGGAGCCTGTGGGATTGACTTGGGGTTTTCTTGCCAAGATCTACTTACCAGGGCTGATGCTTCTGATAATTCTAGCATGGAAACAGACTTAGACAAGCTGTCAGAAAGGGACTTGCTTGGTGACATAATTAAGACACTGTTATATGTGATAAGTGACATCATTCATGTGGTTCCTCATAATTTGGATAGTTTCTCTGCTTATTTGCCACCTAGCAGATATGATATAGATACAACTGCGGAGTTGTCAAATGTGAACCGCAATGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

222

Amino Acids

24.46

Weight (kDa)

4.42

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 632, 652
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 391
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 185, 250, 349
AhdI GACNNNNNGTC 1 cut(s) 493
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 121, 223, 312, 493
AluI AGCT 4 cut(s) 121, 223, 312, 493
Alw21I GWGCWC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 377, 527
BanII GRGCYC 1 cut(s) 314
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
Bbv12I GWGCWC 1 cut(s) 314
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 445
BfaI CTAG 3 cut(s) 171, 468, 606
BfrI CTTAAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 493
BmiI GGNNCC 2 cut(s) 400, 567
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 2 cut(s) 170, 442
BsaJI CCNNGG 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 2 cut(s) 10, 358
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 2 cut(s) 632, 652
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 2 cut(s) 231, 274
BspLI GGNNCC 2 cut(s) 400, 567
BspTI CTTAAG 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 534
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 9, 484
BstENI CCTNNNNNAGG 1 cut(s) 393
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 530
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 2 cut(s) 231, 274
CviAII CATG 6 cut(s) 38, 133, 232, 275, 472, 560
CviJI RGCY 9 cut(s) 28, 86, 121, 191, 223, 312, 401, 449, 493
CviKI_1 RGCY 9 cut(s) 28, 86, 121, 191, 223, 312, 401, 449, 493
DdeI CTNAG 2 cut(s) 9, 484
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraIII CACNNNGTG 1 cut(s) 391
DriI GACNNNNNGTC 1 cut(s) 493
Eam1105I GACNNNNNGTC 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 314
FaeI CATG 6 cut(s) 41, 136, 235, 278, 475, 563
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 518
FatI CATG 6 cut(s) 37, 132, 231, 274, 471, 559
FauNDI CATATG 2 cut(s) 142, 286
FriOI GRGCYC 1 cut(s) 314
FspBI CTAG 3 cut(s) 171, 468, 606
GsaI CCCAGC 1 cut(s) 264
Hin1II CATG 6 cut(s) 41, 136, 235, 278, 475, 563
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 299
HphI GGTGA 2 cut(s) 377, 527
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 12, 118, 460, 499
Hpy188III TCNNGA 4 cut(s) 176, 232, 275, 663
Hpy8I GTNNAC 1 cut(s) 649
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 37, 63, 70, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 9, 484
Hsp92II CATG 6 cut(s) 41, 136, 235, 278, 475, 563
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 118, 398
LpnPI CCDG 6 cut(s) 80, 246, 402, 415, 430, 457
LweI GCATC 2 cut(s) 170, 442
MaeI CTAG 3 cut(s) 171, 468, 606
MaeIII GTNAC 4 cut(s) 110, 209, 515, 548
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 1 cut(s) 361
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 265, 463, 522, 574
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 2 cut(s) 8, 579
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 3 cut(s) 123, 219, 525
MslI CAYNNNNRTG 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 445
Mva1269I GAATGC 2 cut(s) 10, 358
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeI CATATG 2 cut(s) 142, 286
NdeII GATC 1 cut(s) 433
NlaIII CATG 6 cut(s) 41, 136, 235, 278, 475, 563
NlaIV GGNNCC 2 cut(s) 400, 567
NmuCI GTSAC 3 cut(s) 209, 515, 548
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 41
PagI TCATGA 2 cut(s) 231, 274
PctI GAATGC 2 cut(s) 10, 358
PfeI GAWTC 1 cut(s) 299
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 400, 567
PsuI RGATCY 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 123, 219, 525
Sau3AI GATC 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 314
SetI ASST 6 cut(s) 19, 123, 225, 314, 495, 607
SfaNI GCATC 2 cut(s) 170, 442
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 265, 463, 522, 574
SsiI CCGC 2 cut(s) 632, 652
SspI AATATT 1 cut(s) 48
SspMI CTAG 3 cut(s) 171, 468, 606
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 534
TasI AATT 4 cut(s) 265, 463, 522, 574
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 123, 219, 525
Tru9I TTAA 3 cut(s) 123, 219, 525
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 3 cut(s) 209, 515, 548
Tsp45I GTSAC 3 cut(s) 209, 515, 548
TspDTI ATGAA 3 cut(s) 17, 263, 548
TspRI CASTG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 41
XspI CTAG 3 cut(s) 171, 468, 606
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.