Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

7689860 .. 7691402

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTTTTCCAGCCTATCTCGGTCATCGGCACAGAGGATGTCGGCCTTGCCTCACCGGGCCGGAATTTCGATGAGGAATGCGGATGCGACGACGCCGTTGTCTCCAAAGGCACCACTAATGGTGTCAACCTCGCCAAGCACTCCCGAGCTCTACCTCGAACTCGTCAACCTCAACACTGTTCCGTCGATTCGAACCTCCTCGGCCATGACAAAGACCGACATCGCAATCGACGCCATTCGGTTTCTCCGAACTTGACCGATGAGGACACTATGGATGAAAACGATGAGCCCGCAAAAGTCGTAGCGGATGCGCTTGTTGACAATAATGTTCTCGAGCTCTTGGTTCGAATCTACCTCGGTTGTCCGATTCGACGTGGCTCGAAGCTAGAGTCTTCTACAAATGTGGTTGATAGATCATGTTGTTGCGGTATTGTTATTGCTTGTGTTGGTATTGAATTTTCGGATAAAGAACACAGCATTCTTGATGAAGTGAATGCTCAAGGAGTAGCTCTCACCGAGTTGGACATGAACGTGCTTGCCAAAATACTTTTGAAGAGTCTTGATAAGGAGCAAGTGAGTTCAAATGTTGTTATAATGGATTCAATTGTGGCTGCATTATGCGGAAGGTTTGTCAATGTATGTGGCCGGTGGGGTTATATTGATTATGCATATCGGATGTTCAAATTGGTTGAATGTAAAGATGTTGTGTCTTGGATGAGTACGATATCTTGTTATGTTTATTATGGGCTTGCAAGTGAGGCTTTTGAACTTTGTCGGCTCATGAAAGAAATAAATGTTGAACCTGATTATTTCAATGCTTGTGGGATGCATGATCATGGCAAGGAAGCCATTGATTTATTCAAGAGGATGGAAGACCAAAAGATTGTGTCACGCCCCGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

301

Amino Acids

33.61

Weight (kDa)

5.1

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
AasI	GACNNNNNNGTC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	5 cut(s)	81, 291, 305, 426, 621
AcoI	YGGCCR	2 cut(s)	202, 643
AcsI	RAATTY	3 cut(s)	64, 455, 899
AcyI	GRCGYC	2 cut(s)	93, 232
AfaI	GTAC	1 cut(s)	721
AjiI	CACGTC	1 cut(s)	374
AluBI	AGCT	4 cut(s)	149, 337, 385, 509
AluI	AGCT	4 cut(s)	149, 337, 385, 509
Alw21I	GWGCWC	2 cut(s)	151, 339
Alw26I	GTCTC	1 cut(s)	106
Ama87I	CYCGRG	2 cut(s)	144, 332
AoxI	GGCC	4 cut(s)	43, 58, 202, 643
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	3 cut(s)	64, 455, 899
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	45, 505
AsuII	TTCGAA	2 cut(s)	191, 346
AvaI	CYCGRG	2 cut(s)	144, 332
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	3 cut(s)	151, 291, 339
BbsI	GAAGAC	2 cut(s)	384, 879
Bbv12I	GWGCWC	2 cut(s)	151, 339
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	1 cut(s)	862
BceAI	ACGGC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	2 cut(s)	144, 332
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	74, 298, 816
BpiI	GAAGAC	2 cut(s)	384, 879
BplI	GAGNNNNNCTC	2 cut(s)	495, 527
Bpu14I	TTCGAA	2 cut(s)	191, 346
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	93, 232
BsaJI	CCNNGG	2 cut(s)	199, 355
Bse118I	RCCGGY	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	199, 355
BseGI	GGATG	8 cut(s)	43, 89, 280, 313, 681, 720, 831, 873
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	4 cut(s)	45, 60, 204, 645
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	151, 339
BsiHKCI	CYCGRG	2 cut(s)	144, 332
BsiSI	CCGG	3 cut(s)	56, 61, 646
BsmAI	GTCTC	1 cut(s)	106
BsmI	GAATGC	3 cut(s)	83, 477, 499
BsnI	GGCC	4 cut(s)	45, 60, 204, 645
BsoBI	CYCGRG	2 cut(s)	144, 332
Bsp119I	TTCGAA	2 cut(s)	191, 346
Bsp1286I	GDGCHC	3 cut(s)	151, 291, 339
Bsp143I	GATC	2 cut(s)	413, 832
BspACI	CCGC	5 cut(s)	81, 291, 305, 426, 621
BspANI	GGCC	4 cut(s)	45, 60, 204, 645
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	112
BspT104I	TTCGAA	2 cut(s)	191, 346
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	645
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	2 cut(s)	199, 355
BssMI	GATC	2 cut(s)	413, 832
BssNI	GRCGYC	2 cut(s)	93, 232
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	2 cut(s)	93, 232
BstBI	TTCGAA	2 cut(s)	191, 346
BstC8I	GCNNGC	3 cut(s)	291, 537, 750
BstF5I	GGATG	8 cut(s)	43, 89, 280, 313, 681, 720, 831, 873
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	416, 835
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	413, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 758
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	2 cut(s)	384, 879
BsuRI	GGCC	4 cut(s)	45, 60, 204, 645
BtgZI	GCGATG	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	374
BtsCI	GGATG	8 cut(s)	43, 89, 280, 313, 681, 720, 831, 873
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	291, 537, 750
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	2 cut(s)	101, 240
Csp6I	GTAC	1 cut(s)	720
CspCI	CAANNNNNGTGG	4 cut(s)	622, 657, 802, 837
CviAII	CATG	6 cut(s)	206, 417, 526, 781, 830, 836
CviQI	GTAC	1 cut(s)	720
DpnI	GATC	2 cut(s)	415, 834
DpnII	GATC	2 cut(s)	413, 832
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	2 cut(s)	202, 643
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Ecl136II	GAGCTC	2 cut(s)	149, 337
Eco24I	GRGCYC	3 cut(s)	151, 291, 339
Eco32I	GATATC	1 cut(s)	726
Eco53kI	GAGCTC	2 cut(s)	149, 337
Eco88I	CYCGRG	2 cut(s)	144, 332
EcoICRI	GAGCTC	2 cut(s)	149, 337
EcoRV	GATATC	1 cut(s)	726
EcoT22I	ATGCAT	2 cut(s)	670, 831
EcoT38I	GRGCYC	3 cut(s)	151, 291, 339
FaeI	CATG	6 cut(s)	209, 420, 529, 784, 833, 839
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FatI	CATG	6 cut(s)	205, 416, 525, 780, 829, 835
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	8 cut(s)	50, 96, 287, 320, 688, 727, 838, 880
FriOI	GRGCYC	3 cut(s)	151, 291, 339
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	45, 60, 204, 645
HapII	CCGG	3 cut(s)	56, 61, 646
HgaI	GACGC	2 cut(s)	101, 240
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	2 cut(s)	93, 232
Hin1II	CATG	6 cut(s)	209, 420, 529, 784, 833, 839
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	3 cut(s)	127, 167, 319
HindII	GTYRAC	3 cut(s)	127, 167, 319
HinfI	GANTC	6 cut(s)	188, 348, 367, 389, 556, 599
HpaII	CCGG	3 cut(s)	56, 61, 646
HphI	GGTGA	2 cut(s)	45, 505
Hpy166II	GTNNAC	3 cut(s)	127, 167, 319
Hpy188I	TCNGA	4 cut(s)	249, 366, 463, 675
Hpy188III	TCNNGA	6 cut(s)	144, 332, 482, 560, 781, 862
Hpy8I	GTNNAC	3 cut(s)	127, 167, 319
Hpy99I	CGWCG	5 cut(s)	92, 95, 188, 234, 375
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	373, 531
HpyCH4V	TGCA	4 cut(s)	614, 668, 752, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 758
HpySE526I	ACGT	2 cut(s)	373, 531
Hsp92I	GRCGYC	2 cut(s)	93, 232
Hsp92II	CATG	6 cut(s)	209, 420, 529, 784, 833, 839
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	2 cut(s)	413, 832
LmnI	GCTCC	1 cut(s)	568
LpnPI	CCDG	5 cut(s)	23, 69, 74, 659, 816
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	74, 298, 816
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	2 cut(s)	373, 531
MaeIII	GTNAC	1 cut(s)	888
MalI	GATC	2 cut(s)	415, 834
MboI	GATC	2 cut(s)	413, 832
MboII	GAAGA	3 cut(s)	384, 565, 884
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	3 cut(s)	151, 291, 339
MluCI	AATT	5 cut(s)	64, 455, 603, 683, 899
MlyI	GAGTC	2 cut(s)	398, 565
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	2 cut(s)	670, 831
MslI	CAYNNNNRTG	2 cut(s)	530, 834
MspI	CCGG	3 cut(s)	56, 61, 646
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	3 cut(s)	83, 477, 499
MwoI	GCNNNNNNNGC	2 cut(s)	231, 758
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	413, 832
NlaIII	CATG	6 cut(s)	209, 420, 529, 784, 833, 839
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	888
NsiI	ATGCAT	2 cut(s)	670, 831
NspV	TTCGAA	2 cut(s)	191, 346
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	780
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PctI	GAATGC	3 cut(s)	83, 477, 499
PfeI	GAWTC	4 cut(s)	188, 348, 367, 599
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	397, 564
PpsI	GAGTC	2 cut(s)	397, 564
PsiI	TTATAA	1 cut(s)	593
Psp124BI	GAGCTC	2 cut(s)	151, 339
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	2 cut(s)	530, 834
SacI	GAGCTC	2 cut(s)	151, 339
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	2 cut(s)	413, 832
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	398, 565
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	151, 291, 339
SfaNI	GCATC	3 cut(s)	74, 298, 816
Sfr274I	CTCGAG	1 cut(s)	332
SfuI	TTCGAA	2 cut(s)	191, 346
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	530, 834
SmlI	CTYRAG	2 cut(s)	332, 498
SmoI	CTYRAG	2 cut(s)	332, 498
Sse9I	AATT	5 cut(s)	64, 455, 603, 683, 899
SsiI	CCGC	5 cut(s)	81, 291, 305, 426, 621
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	151, 339
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	376, 534
TaqI	TCGA	9 cut(s)	69, 157, 186, 191, 229, 333, 346, 370, 380
TaqII	GACCGA	3 cut(s)	10, 231, 272
TasI	AATT	5 cut(s)	64, 455, 603, 683, 899
TfiI	GAWTC	4 cut(s)	188, 348, 367, 599
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	4 cut(s)	291, 501, 542, 797
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	3 cut(s)	64, 455, 899
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	2 cut(s)	670, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.