Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8209074.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 714

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8209074.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 713 bp

atggagtttatgaagccggatttggctgcttgcaatgcagctttggaggggtgttgttgtgagcttgaatcggtgagtggggccgagaaagttgtggagacaatggcgattttgggtgtgaagcctgatgaatccagttttggatttcttgcttatttgtatgcattgaagggtttgggggagaagataagtgagttggagggtttgatgggtgggtttggtttttcggataaaagggtgtttcggaataatttgatcaatgggcatgttaagtcaggcaaattagaatttgtttcagcaactattctgcagggtttaagagaaggtgatggggaatgtttggatttgggtgtagaaacttattgtcgagttgttaaaggatttcttgataacagaaatgtgaaagatttggcaactttgattattgaagctcagaagctagagtcttccacagttgtggttgatagatcagttggttatggtattgttaatgcttgcgtaggtattggattatcagataaagcacacagcattcttgatgaaatgaattctcagggcggtactttggggcttggtgtgcatgtgccaatattgaaggcttattgcaaagagcatagaactgctgaggccactcaactggtcatggatattagtaactcggggcttaagttggacatggaaacatatgatactctaatagaagcatctatgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

238

Amino Acids

25.54

Weight (kDa)

4.82

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	558
AcsI	RAATTY	2 cut(s)	287, 547
AfaI	GTAC	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	4 cut(s)	68, 169, 428, 595
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 123, 155
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	41, 64, 431, 439
AluI	AGCT	4 cut(s)	41, 64, 431, 439
Alw26I	GTCTC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	81, 627
ApeKI	GCWGC	2 cut(s)	26, 38
ApoI	RAATTY	2 cut(s)	287, 547
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	85, 338
AvaI	CYCGRG	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	13, 50
BccI	CCATC	2 cut(s)	202, 323
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	2 cut(s)	27, 39
BlsI	GCNGC	2 cut(s)	28, 40
BmeT110I	CYCGRG	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	624
Bse1I	ACTGG	2 cut(s)	135, 642
Bse3DI	GCAATG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	446, 566, 615
BseNI	ACTGG	2 cut(s)	135, 642
BseXI	GCAGC	2 cut(s)	13, 50
BshFI	GGCC	2 cut(s)	83, 629
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	2 cut(s)	83, 629
BsoBI	CYCGRG	1 cut(s)	658
Bsp143I	GATC	2 cut(s)	255, 467
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	83, 629
BspCNI	CTCAG	3 cut(s)	445, 565, 616
BspLI	GGNNCC	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	135, 642
BssMI	GATC	2 cut(s)	255, 467
Bst4CI	ACNGT	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	31, 496
BstDEI	CTNAG	3 cut(s)	432, 552, 624
BstKTI	GATC	2 cut(s)	258, 470
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	255, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 577
BstNSI	RCATGY	2 cut(s)	269, 584
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	13, 50
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	2 cut(s)	457, 637
BsuRI	GGCC	2 cut(s)	83, 629
Cac8I	GCNNGC	2 cut(s)	31, 496
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	4 cut(s)	266, 581, 643, 676
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	3 cut(s)	432, 552, 624
DpnI	GATC	2 cut(s)	257, 469
DpnII	GATC	2 cut(s)	255, 467
Eco88I	CYCGRG	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	4 cut(s)	269, 584, 646, 679
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	4 cut(s)	265, 580, 642, 675
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	27, 39
Fsp4HI	GCNGC	2 cut(s)	27, 39
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	27, 39
HaeIII	GGCC	2 cut(s)	83, 629
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	4 cut(s)	269, 584, 646, 679
HinfI	GANTC	3 cut(s)	68, 131, 443
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	85, 338
Hpy188I	TCNGA	4 cut(s)	229, 246, 435, 517
Hpy188III	TCNNGA	2 cut(s)	386, 536
HpyAV	CCTTC	3 cut(s)	163, 317, 589
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	6 cut(s)	33, 38, 164, 310, 580, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 577
HpyF3I	CTNAG	3 cut(s)	432, 552, 624
Hsp92II	CATG	4 cut(s)	269, 584, 646, 679
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 467
LpnPI	CCDG	7 cut(s)	30, 138, 148, 261, 296, 539, 623
Lsp1109I	GCAGC	2 cut(s)	13, 50
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	2 cut(s)	257, 469
MboI	GATC	2 cut(s)	255, 467
MboII	GAAGA	2 cut(s)	196, 438
MluCI	AATT	4 cut(s)	250, 281, 287, 547
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	177, 651
MnlI	CCTC	3 cut(s)	40, 193, 619
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	5 cut(s)	270, 317, 375, 489, 666
MslI	CAYNNNNRTG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	35, 577
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	255, 467
NlaIII	CATG	4 cut(s)	269, 584, 646, 679
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	2 cut(s)	269, 584
OliI	CACNNNNGTG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	68, 131
PkrI	GCNGC	2 cut(s)	28, 40
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	5 cut(s)	270, 317, 375, 489, 666
SatI	GCNGC	2 cut(s)	27, 39
Sau3AI	GATC	2 cut(s)	255, 467
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	452
SetI	ASST	6 cut(s)	43, 66, 328, 433, 441, 505
SfcI	CTRYAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	250, 281, 287, 547
SsiI	CCGC	1 cut(s)	558
SspI	AATATT	1 cut(s)	591
SspMI	CTAG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	367
TasI	AATT	4 cut(s)	250, 281, 287, 547
TfiI	GAWTC	2 cut(s)	68, 131
Tru1I	TTAA	5 cut(s)	270, 317, 375, 489, 666
Tru9I	TTAA	5 cut(s)	270, 317, 375, 489, 666
TseI	GCWGC	2 cut(s)	26, 38
TspDTI	ATGAA	4 cut(s)	26, 144, 555, 560
Vha464I	CTTAAG	1 cut(s)	665
XapI	RAATTY	2 cut(s)	287, 547
XceI	RCATGY	2 cut(s)	269, 584
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.