Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006274.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

5000 .. 5899

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006274.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgaacaccgcgcgcaaatggtctgttgcaatttttcttgcattaatctcaagttgcctacatgttactgatcataagcaaaagtttgggaatatcgcaagacttgttaaggtgatgtgtcgtagcaaaagcaccattgtcaaaggaacctgtggggttatcttggggttttcttgccatgatcttcttagcagggctgatgctgctgataattatagcactgaaacagactcagaaaagatgtcagaaaggaacttgcttggtgacataggtaaggcattattaggtatgagagtttggcataattattttccacctagtagatatgatatagataaaagtataactgctaagttgtcaaatgagaactgtgataactctctcaaagatatcgggggtattgctggacttgttcttggtttggcgagttctattggtgcattgcacaatgctggggtgcatgatgctattttaaagataaaagatattgtgatatcatgggttcagcatatgaatatactagttcaaggctcattccatcatcttcttcaatggggtatcacattgttcatcttctaccttgagttattaatgcttgtattattctctggtgaggccacgtttcgagaagttcaggggacgaagatggaattgcatcaagcaattgttaaaatggagcaaagaggtagttctaatggtatccttcaggtccaagctgattgtatacaatatgatcttgaggaactaataaaggctcttactggacgttgtaagaaacatgggctagacatgaagttagctgcaacaattgagcttccaattggttggcaacctaatattcaagatggaacatctgttagggatgaagattggacaagttggaagacatttcaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

299

Amino Acids

33.27

Weight (kDa)

7.16

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	2 cut(s)	11, 13
AciI	CCGC	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	527, 551, 842
AhlI	ACTAGT	1 cut(s)	520
AluBI	AGCT	3 cut(s)	716, 800, 814
AluI	AGCT	3 cut(s)	716, 800, 814
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	2 cut(s)	203, 800
AseI	ATTAAT	2 cut(s)	44, 590
AspLEI	GCGC	2 cut(s)	13, 15
AspS9I	GGNCC	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	124, 275, 623
AvaII	GGWCC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	890
BbvI	GCAGC	2 cut(s)	190, 787
BccI	CCATC	3 cut(s)	546, 640, 839
BciVI	GTATCC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	3 cut(s)	318, 521, 785
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	2 cut(s)	204, 801
BlsI	GCNGC	2 cut(s)	205, 802
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	3 cut(s)	190, 454, 664
BpiI	GAAGAC	1 cut(s)	890
BpuEI	CTTGAG	3 cut(s)	34, 602, 758
Bse1I	ACTGG	1 cut(s)	766
Bse3DI	GCAATG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	868
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	766
BsePI	GCGCGC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	190, 787
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	2 cut(s)	11, 13
BshFI	GGCC	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	617
Bsp143I	GATC	3 cut(s)	70, 181, 733
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	1 cut(s)	245
BspFNI	CGCG	2 cut(s)	11, 13
BspLI	GGNNCC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	766
BssHII	GCGCGC	1 cut(s)	11
BssMI	GATC	3 cut(s)	70, 181, 733
BssNAI	GTATAC	1 cut(s)	725
Bst1107I	GTATAC	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	188, 232, 351
BstF5I	GGATG	1 cut(s)	868
BstFNI	CGCG	2 cut(s)	11, 13
BstHHI	GCGC	2 cut(s)	13, 15
BstKTI	GATC	3 cut(s)	73, 184, 736
BstMBI	GATC	3 cut(s)	70, 181, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	65
BstUI	CGCG	2 cut(s)	11, 13
BstV1I	GCAGC	2 cut(s)	190, 787
BstV2I	GAAGAC	1 cut(s)	890
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	725
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	868
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	13, 15
Cfr13I	GGNCC	1 cut(s)	709
CviAII	CATG	6 cut(s)	62, 179, 461, 498, 779, 790
CviJI	RGCY	9 cut(s)	197, 531, 617, 716, 755, 784, 800, 814, 896
CviKI_1	RGCY	9 cut(s)	197, 531, 617, 716, 755, 784, 800, 814, 896
DdeI	CTNAG	3 cut(s)	188, 232, 351
DpnI	GATC	3 cut(s)	72, 183, 735
DpnII	GATC	3 cut(s)	70, 181, 733
DraI	TTTAAA	1 cut(s)	474
Eco32I	GATATC	2 cut(s)	391, 495
Eco47I	GGWCC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	689
EcoRV	GATATC	2 cut(s)	391, 495
FaeI	CATG	6 cut(s)	65, 182, 464, 501, 782, 793
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	6 cut(s)	61, 178, 460, 497, 778, 789
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	204, 801
FokI	GGATG	1 cut(s)	875
Fsp4HI	GCNGC	2 cut(s)	204, 801
FspBI	CTAG	3 cut(s)	318, 521, 785
GlaI	GCGC	2 cut(s)	12, 14
GluI	GCNGC	2 cut(s)	204, 801
GsaI	CCCAGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	617
HhaI	GCGC	2 cut(s)	13, 15
Hin1II	CATG	6 cut(s)	65, 182, 464, 501, 782, 793
Hin6I	GCGC	2 cut(s)	11, 13
HinP1I	GCGC	2 cut(s)	11, 13
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	3 cut(s)	124, 275, 623
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	2 cut(s)	235, 247
Hpy188III	TCNNGA	3 cut(s)	626, 737, 842
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	620, 766
HpyCH4V	TGCA	7 cut(s)	29, 41, 440, 445, 460, 655, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	188, 232, 351
HpySE526I	ACGT	2 cut(s)	620, 766
Hsp92II	CATG	6 cut(s)	65, 182, 464, 501, 782, 793
HspAI	GCGC	2 cut(s)	11, 13
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	70, 181, 733
LmnI	GCTCC	1 cut(s)	676
LpnPI	CCDG	9 cut(s)	163, 178, 390, 438, 594, 620, 692, 747, 878
Lsp1109I	GCAGC	2 cut(s)	190, 787
LweI	GCATC	3 cut(s)	190, 454, 664
MaeI	CTAG	3 cut(s)	318, 521, 785
MaeII	ACGT	2 cut(s)	620, 766
MaeIII	GTNAC	2 cut(s)	64, 263
MalI	GATC	3 cut(s)	72, 183, 735
MboI	GATC	3 cut(s)	70, 181, 733
MboII	GAAGA	7 cut(s)	176, 536, 539, 565, 655, 878, 895
MfeI	CAATTG	3 cut(s)	663, 807, 819
MluCI	AATT	7 cut(s)	30, 211, 304, 650, 663, 807, 819
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	860
MnlI	CCTC	3 cut(s)	607, 677, 733
MseI	TTAA	5 cut(s)	44, 108, 473, 590, 669
MunI	CAATTG	3 cut(s)	663, 807, 819
MvnI	CGCG	2 cut(s)	11, 13
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	3 cut(s)	70, 181, 733
NlaIII	CATG	6 cut(s)	65, 182, 464, 501, 782, 793
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	65
PauI	GCGCGC	1 cut(s)	11
PciI	ACATGT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	205, 802
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	61
PshBI	ATTAAT	2 cut(s)	44, 590
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	709
PteI	GCGCGC	1 cut(s)	11
SaqAI	TTAA	5 cut(s)	44, 108, 473, 590, 669
SatI	GCNGC	2 cut(s)	204, 801
Sau3AI	GATC	3 cut(s)	70, 181, 733
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	1 cut(s)	224
SfaNI	GCATC	3 cut(s)	190, 454, 664
SinI	GGWCC	1 cut(s)	709
SmlI	CTYRAG	3 cut(s)	49, 581, 737
SmoI	CTYRAG	3 cut(s)	49, 581, 737
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	7 cut(s)	30, 211, 304, 650, 663, 807, 819
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	3 cut(s)	318, 521, 785
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	623, 769
TaqI	TCGA	1 cut(s)	625
TasI	AATT	7 cut(s)	30, 211, 304, 650, 663, 807, 819
Tru1I	TTAA	5 cut(s)	44, 108, 473, 590, 669
Tru9I	TTAA	5 cut(s)	44, 108, 473, 590, 669
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	203, 800
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	17, 527, 559, 806, 879
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	709
VspI	ATTAAT	2 cut(s)	44, 590
XceI	RCATGY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	3 cut(s)	318, 521, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.