Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007103.1

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

23019 .. 24230

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007103.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgaatgctcagggaggtattttggggcttgatgtgcatgtatcaatattgaatgctctttgcaaggtgcataggactgctgaagccactcaactggttatggatattagtaacttgaagcttaagttggacatggaaacatatgatactctaatagaagcatctatgtctagtcaagattttcaatcagcttttgatggggcattatgtgacttgattaagctttatgtcatgatttatagtgccttcaatgataatgctgggaatttgcttcatgattacacatttgggataatggaatctgttgcgagctctcttgttgatatgtatgcccactgtggaactttgaagaatgcatacaacatatataattgtgttagaaacaaaagcctaattttttggactaccatgatcaatgtgtatgggatgcatggacatggcaagggagccattgatttattcgagaggatgcatgaccaaaagattgttcctgatcatattatgtttttggctcaagtctttgacattaagggtcaaatggaaacttatgatgggtttgcaaacaatttggagaagatgtgtttgcttattgctggtaggtttgatagaatggaaggaaatgcaagagtaatgttggatgacatttggggaagatggaaatctttagtaattgctgcaaataatgagaattgtactgaagagttgcatgtaatttttcttgaaaaccatatggagctatttgcaaagtgcttgggacatgtgaagtctacctttgctgctcttcatataatgcagaagttgggattcaaacccaattacccgaattgccttaagttattcccaccttatgttagtgtatttgttgtgaataagattcattttgtgattgaacatccattgattgatgaagactattatgcacgtgttaaggggagacaaatcacctccaatcttagtaaagtttctgcagttgcattttatatcttctttgagaatctaaatgcagaagttgttgctggaattattgggaacaagcaagacgttgttgatcaccttacatggaccttcttgtacaagaggctcactcaaaatcccagctattataatcttcagggagttattcagaggcatccgtctgattacctctcaaagcttattgaaaatacattgactgacttggagacaatcaaagaagatgttgaggaatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

403

Amino Acids

45.91

Weight (kDa)

5.63

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AccI	GTMKAC	1 cut(s)	767
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	3 cut(s)	102, 717, 1094
AcvI	CACGTG	1 cut(s)	923
AfaI	GTAC	2 cut(s)	694, 1073
AflII	CTTAAG	2 cut(s)	122, 830
AflIII	ACRYGT	2 cut(s)	757, 922
AgsI	TTSAA	9 cut(s)	52, 118, 185, 250, 349, 722, 808, 890, 1160
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 471, 503
AluBI	AGCT	7 cut(s)	121, 191, 223, 312, 736, 1098, 1153
AluI	AGCT	7 cut(s)	121, 191, 223, 312, 736, 1098, 1153
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	928, 1175
ApeKI	GCWGC	2 cut(s)	674, 776
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	1062
AsuHPI	GGTGA	2 cut(s)	934, 1043
AvaII	GGWCC	1 cut(s)	1062
BanII	GRGCYC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbrPI	CACGTG	1 cut(s)	923
BbsI	GAAGAC	1 cut(s)	915
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	661, 763
BccI	CCATC	3 cut(s)	191, 545, 648
BclI	TGATCA	3 cut(s)	411, 493, 1048
BcoDI	GTCTC	2 cut(s)	928, 1175
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	966
BfrI	CTTAAG	2 cut(s)	122, 830
BisI	GCNGC	2 cut(s)	675, 777
BlsI	GCNGC	2 cut(s)	676, 778
Bme18I	GGWCC	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	1062
BmiI	GGNNCC	1 cut(s)	448
BmsI	GCATC	4 cut(s)	170, 417, 459, 1138
BpiI	GAAGAC	1 cut(s)	915
BplI	GAGNNNNNCTC	2 cut(s)	1069, 1101
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	923
BsaBI	GATNNNNATC	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bse1I	ACTGG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	658
BseGI	GGATG	5 cut(s)	432, 474, 643, 892, 1129
BseJI	GATNNNNATC	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	661, 763
BseYI	CCCAGC	2 cut(s)	260, 1094
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	768
BsmAI	GTCTC	2 cut(s)	928, 1175
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	3 cut(s)	10, 58, 358
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	3 cut(s)	411, 493, 1048
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	3 cut(s)	231, 274, 1208
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	970
BspQI	GCTCTTC	1 cut(s)	786
BspTI	CTTAAG	2 cut(s)	122, 830
BsrGI	TGTACA	1 cut(s)	1071
BsrI	ACTGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	411, 493, 1048
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	693, 786
BstAFI	CTTAAG	2 cut(s)	122, 830
BstAUI	TGTACA	1 cut(s)	1071
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	9, 953
BstF5I	GGATG	5 cut(s)	432, 474, 643, 892, 1129
BstKTI	GATC	3 cut(s)	414, 496, 1051
BstMAI	GTCTC	2 cut(s)	928, 1175
BstMBI	GATC	3 cut(s)	411, 493, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	3 cut(s)	41, 710, 761
BstSFI	CTRYAG	1 cut(s)	966
BstV1I	GCAGC	2 cut(s)	661, 763
BstV2I	GAAGAC	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	94
BtsCI	GGATG	5 cut(s)	432, 474, 643, 892, 1129
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	310
CciI	TCATGA	3 cut(s)	231, 274, 1208
Cfr13I	GGNCC	1 cut(s)	1062
Csp6I	GTAC	2 cut(s)	693, 1072
CviQI	GTAC	2 cut(s)	693, 1072
DdeI	CTNAG	2 cut(s)	9, 953
DpnI	GATC	3 cut(s)	413, 495, 1050
DpnII	GATC	3 cut(s)	411, 493, 1048
Eam1104I	CTCTTC	2 cut(s)	693, 786
EarI	CTCTTC	2 cut(s)	693, 786
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	1062
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	3 cut(s)	102, 717, 1094
Eco72I	CACGTG	1 cut(s)	923
EcoICRI	GAGCTC	1 cut(s)	312
EcoT22I	ATGCAT	3 cut(s)	358, 432, 474
EcoT38I	GRGCYC	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	768
FauNDI	CATATG	2 cut(s)	142, 729
FbaI	TGATCA	3 cut(s)	411, 493, 1048
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	2 cut(s)	675, 777
FokI	GGATG	5 cut(s)	439, 481, 650, 879, 1116
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	675, 777
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	2 cut(s)	675, 777
GsaI	CCCAGC	2 cut(s)	264, 1098
HindIII	AAGCTT	3 cut(s)	119, 221, 1151
HinfI	GANTC	5 cut(s)	299, 804, 874, 994, 1205
HphI	GGTGA	2 cut(s)	934, 1043
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	2 cut(s)	1125, 1138
Hpy188III	TCNNGA	7 cut(s)	176, 232, 275, 463, 491, 719, 1209
Hpy8I	GTNNAC	1 cut(s)	768
HpyAV	CCTTC	3 cut(s)	256, 608, 1075
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	922, 1041
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	9, 953
HpySE526I	ACGT	2 cut(s)	922, 1041
Ksp22I	TGATCA	3 cut(s)	411, 493, 1048
Kzo9I	GATC	3 cut(s)	411, 493, 1048
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	2 cut(s)	446, 733
LpnPI	CCDG	7 cut(s)	80, 246, 504, 579, 1002, 1097, 1108
Lsp1109I	GCAGC	2 cut(s)	661, 763
LweI	GCATC	4 cut(s)	170, 417, 459, 1138
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	2 cut(s)	922, 1041
MaeIII	GTNAC	2 cut(s)	110, 209
MalI	GATC	3 cut(s)	413, 495, 1050
MboI	GATC	3 cut(s)	411, 493, 1048
MboII	GAAGA	9 cut(s)	361, 586, 663, 710, 773, 920, 976, 1100, 1205
MhlI	GDGCHC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	108, 615
MnlI	CCTC	7 cut(s)	8, 459, 955, 1071, 1119, 1154, 1195
Mph1103I	ATGCAT	3 cut(s)	358, 432, 474
MseI	TTAA	5 cut(s)	123, 219, 528, 831, 927
MslI	CAYNNNNRTG	1 cut(s)	435
MspCI	CTTAAG	2 cut(s)	122, 830
Mva1269I	GAATGC	3 cut(s)	10, 58, 358
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeI	CATATG	2 cut(s)	142, 729
NdeII	GATC	3 cut(s)	411, 493, 1048
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	3 cut(s)	358, 432, 474
NspI	RCATGY	3 cut(s)	41, 710, 761
PagI	TCATGA	3 cut(s)	231, 274, 1208
PciI	ACATGT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	786
PctI	GAATGC	3 cut(s)	10, 58, 358
PfeI	GAWTC	5 cut(s)	299, 804, 874, 994, 1205
PkrI	GCNGC	2 cut(s)	676, 778
PmaCI	CACGTG	1 cut(s)	923
PmlI	CACGTG	1 cut(s)	923
Ppu21I	YACGTR	1 cut(s)	923
PscI	ACATGT	1 cut(s)	757
PsiI	TTATAA	1 cut(s)	1104
Psp124BI	GAGCTC	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	923
PspFI	CCCAGC	2 cut(s)	260, 1094
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	1062
PstI	CTGCAG	1 cut(s)	970
RsaI	GTAC	2 cut(s)	694, 1073
RsaNI	GTAC	2 cut(s)	693, 1072
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	5 cut(s)	123, 219, 528, 831, 927
SatI	GCNGC	2 cut(s)	675, 777
Sau3AI	GATC	3 cut(s)	411, 493, 1048
Sau96I	GGNCC	1 cut(s)	1062
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	4 cut(s)	170, 417, 459, 1138
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	1062
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	3 cut(s)	122, 513, 830
SmoI	CTYRAG	3 cut(s)	122, 513, 830
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	925, 1044
TaqI	TCGA	1 cut(s)	462
TatI	WGTACW	2 cut(s)	692, 1071
TfiI	GAWTC	5 cut(s)	299, 804, 874, 994, 1205
Tru1I	TTAA	5 cut(s)	123, 219, 528, 831, 927
Tru9I	TTAA	5 cut(s)	123, 219, 528, 831, 927
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	674, 776
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	5 cut(s)	17, 263, 773, 866, 921
TspGWI	ACGGA	1 cut(s)	1122
TspRI	CASTG	1 cut(s)	341
Vha464I	CTTAAG	2 cut(s)	122, 830
VpaK11BI	GGWCC	1 cut(s)	1062
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	3 cut(s)	41, 710, 761
XmiI	GTMKAC	1 cut(s)	767
XspI	CTAG	1 cut(s)	171
Zsp2I	ATGCAT	3 cut(s)	358, 432, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.