Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

29892907 .. 29895570

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGAATTGTGCCAACACTGCTGCTCCTGCTTTTGCTTTGATTCAATGCATGTTCAAGAACAGGTTTTTCTTGCCGTTTAGTGTGTGGGGGAGTGTTGTGGTTGAGATTAGTAGGAGAAATGGTAACTTTGGTGCGTTTTTACGGGTTTTCGAGGAGAATTGTAGGGTTGCTTTGGAGGAGAAGATGGAGGTTATGAAACCGGATTTGGCTGCTTGTAATGCAGCATTGGAGGGGTGTTGTTGTGAGCTTGAATCGGTGAGTGGCGCCGAGAAAGTTGTGGAGACAATGGTGGGATTGGGTGTGAGGCCTGATGAATGCAGTTTTGGATTTCTTGCTTATTTGTATGCATTGAAGGGTTTGGGGGAGAAGATCAGTGAGTTGGAGGGTTTAATGGGTGGGTTTGGTTTTTCGGATAGAAGGGTGTTTAGGAATAATTTGATCAATGGGTATGTTAAGTCTGGCAAATTGGAATTTGTTTCAGAAACTATTCTGCAGGGTTTAAGAGAATGTGGTGGGGAATGTTTGGATTTGGATGGAGAAACGTATTGTCGAGTTGTTAGAGGATTTCTTGATAATGGAAATGTGAAAGAGTTGGCAACTCTGATTATTGAAGCTCAGAAGCTGGAGTCTTCCACAGTTGCGGTTGATAGATCAATTGGTTACGGTGTTGTTAATGCTTGTGTTGGTATTGGATTATCAGATAAAGCACACAGTATTCTGGATGAAATGAATGCTCAGGGAGGTACTTTGGGGCTTGGTGTGTATGTACCAATATTGAAGGCTTATAGCAAAGAGCATAGGACTGCTGAAGCAACTCAACTGGTAATGGATATTAGTAATTCAGGGCTGAAGTTGGACACGGAAACATATGATACTCTTATAGAAGCATCTATTTCTAGTCAAGATTTTCAATCGGCTTTCTCTTTGTTTAGGGACATGAGAGAAGCAAGAACACCTGACTTGAAGGGTAGTTATCTGACCATGATGACAGGCTTAATGGAAAATCACCGGCCAGAGTTGATGGCGGCCTTCTTAGATGAGGTTGTGGAGGACCCTCGAATTGAAGTGGGTACCCACGACTGGAATTCAATTATTCATGCCTTTTGTAAAGCTGGGCGACTGGAAGATGCGAGGAGGACTTTTAGAAGGATGGTATTCTTGCAGTACAATCCTAATGACCAGACATATTTGTCATTAATTAGTGGGTACGTTTCTGTGGAGAAATATTTTTGTGTTTTGATGCTGTGGCATGAGGTGAAAAGAAATATTTCAGTTGATGGAGAGAAAGGGCTTAAATTTGATCACAACATGGTTGATGCATTCCTCTATGCTCTTGTTAAGGGAGGCTTTTTTGATGCAGTAATGCAAGTTGTTGAGAAATCTCAAGAAATGAAAATCTTTGTGGATAAATGGAGGTACAAGCAGGCATTCATGGAAACCCATAAGAAGCTTAAAGTGTCAAAATTGAGAAAGAGGAGTTTTAGGAAAATGGAAGCACTTGTTGCTTTCAAGAATTGGGCTGGTCTCAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

512

Amino Acids

57.32

Weight (kDa)

5.91

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	1 - 66	4.5e-32	At1g68980, TPR repeats
PPR_2	PF13041	361 - 404	2.4e-10	PPR repeat family
PPR	PF01535	361 - 385	5.5e-06	PPR repeat
PPR_1	PF12854	361 - 385	5.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1189
Acc65I	GGTACC	1 cut(s)	1070
AccB1I	GGYRCC	2 cut(s)	263, 1070
AciI	CCGC	2 cut(s)	641, 1025
AcoI	YGGCCR	1 cut(s)	1010
AcsI	RAATTY	3 cut(s)	470, 1084, 1295
AcuI	CTGAAG	2 cut(s)	828, 869
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	6 cut(s)	745, 768, 1072, 1166, 1208, 1418
AfiI	CCNNNNNNNGG	1 cut(s)	1080
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 306, 338
AluBI	AGCT	5 cut(s)	247, 614, 622, 1112, 1450
AluI	AGCT	5 cut(s)	247, 614, 622, 1112, 1450
Alw26I	GTCTC	2 cut(s)	275, 1529
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	305, 1010, 1026
ApeKI	GCWGC	3 cut(s)	20, 209, 221
ApoI	RAATTY	3 cut(s)	470, 1084, 1295
AseI	ATTAAT	1 cut(s)	1196
Asp700I	GAANNNNTTC	2 cut(s)	486, 1267
Asp718I	GGTACC	1 cut(s)	1070
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	1051
AsuHPI	GGTGA	3 cut(s)	268, 998, 1267
AvaII	GGWCC	1 cut(s)	1051
BanI	GGYRCC	2 cut(s)	263, 1070
BbsI	GAAGAC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	7, 196, 233
BccI	CCATC	5 cut(s)	178, 527, 1015, 1144, 1271
BceAI	ACGGC	1 cut(s)	58
BclI	TGATCA	2 cut(s)	438, 1300
BcoDI	GTCTC	2 cut(s)	275, 1529
BfaI	CTAG	1 cut(s)	897
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	4 cut(s)	21, 210, 222, 1026
BlsI	GCNGC	4 cut(s)	22, 211, 223, 1027
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	1 cut(s)	1051
BmiI	GGNNCC	3 cut(s)	265, 1053, 1072
BmsI	GCATC	5 cut(s)	896, 1117, 1230, 1306, 1345
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	1368
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1529
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	1080
Bse118I	RCCGGY	1 cut(s)	1008
Bse1I	ACTGG	3 cut(s)	825, 1085, 1125
BseGI	GGATG	3 cut(s)	538, 727, 1155
BseLI	CCNNNNNNNGG	1 cut(s)	1080
BseMII	CTCAG	2 cut(s)	629, 749
BseNI	ACTGG	3 cut(s)	825, 1085, 1125
BseRI	GAGGAG	4 cut(s)	167, 191, 1147, 1489
BseXI	GCAGC	3 cut(s)	7, 196, 233
BseYI	CCCAGC	1 cut(s)	1112
BshFI	GGCC	3 cut(s)	307, 1012, 1028
BshNI	GGYRCC	2 cut(s)	263, 1070
BsiSI	CCGG	2 cut(s)	200, 1009
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	1 cut(s)	1080
BsmAI	GTCTC	2 cut(s)	275, 1529
BsmFI	GGGAC	1 cut(s)	947
BsmI	GAATGC	4 cut(s)	320, 736, 1319, 1427
BsnI	GGCC	3 cut(s)	307, 1012, 1028
Bso31I	GGTCTC	1 cut(s)	1529
Bsp143I	GATC	4 cut(s)	369, 438, 650, 1300
BspACI	CCGC	2 cut(s)	641, 1025
BspANI	GGCC	3 cut(s)	307, 1012, 1028
BspCNI	CTCAG	2 cut(s)	628, 748
BspLI	GGNNCC	3 cut(s)	265, 1053, 1072
BspMAI	CTGCAG	1 cut(s)	495
BspT107I	GGYRCC	2 cut(s)	263, 1070
BspTNI	GGTCTC	1 cut(s)	1529
BsrFI	RCCGGY	1 cut(s)	1008
BsrI	ACTGG	3 cut(s)	825, 1085, 1125
BssAI	RCCGGY	1 cut(s)	1008
BssMI	GATC	4 cut(s)	369, 438, 650, 1300
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	637, 665, 713
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	1502
BstC8I	GCNNGC	1 cut(s)	1425
BstDEI	CTNAG	3 cut(s)	615, 735, 1033
BstF5I	GGATG	3 cut(s)	538, 727, 1155
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	372, 441, 653, 1303
BstMAI	GTCTC	2 cut(s)	275, 1529
BstMBI	GATC	4 cut(s)	369, 438, 650, 1300
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 1502
BstNSI	RCATGY	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	7, 196, 233
BstV2I	GAAGAC	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	307, 1012, 1028
BtsCI	GGATG	3 cut(s)	538, 727, 1155
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 379
Cac8I	GCNNGC	1 cut(s)	1425
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	1 cut(s)	1051
Csp6I	GTAC	6 cut(s)	744, 767, 1071, 1165, 1207, 1417
CviAII	CATG	8 cut(s)	49, 937, 982, 1097, 1250, 1309, 1432, 1533
CviQI	GTAC	6 cut(s)	744, 767, 1071, 1165, 1207, 1417
DdeI	CTNAG	3 cut(s)	615, 735, 1033
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	4 cut(s)	371, 440, 652, 1302
DpnII	GATC	4 cut(s)	369, 438, 650, 1300
DrdI	GACNNNNNNGTC	1 cut(s)	1189
DseDI	GACNNNNNNGTC	1 cut(s)	1189
EaeI	YGGCCR	1 cut(s)	1010
Eco147I	AGGCCT	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	1529
Eco47I	GGWCC	1 cut(s)	1051
Eco57I	CTGAAG	2 cut(s)	828, 869
EcoO109I	RGGNCCY	1 cut(s)	1051
EcoRI	GAATTC	1 cut(s)	1084
EcoT22I	ATGCAT	4 cut(s)	50, 349, 1321, 1534
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FaeI	CATG	8 cut(s)	52, 940, 985, 1100, 1253, 1312, 1435, 1536
FalI	AAGNNNNNCTT	2 cut(s)	1331, 1363
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	8 cut(s)	48, 936, 981, 1096, 1249, 1308, 1431, 1532
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	2 cut(s)	438, 1300
Fnu4HI	GCNGC	4 cut(s)	21, 210, 222, 1026
FokI	GGATG	3 cut(s)	545, 734, 1162
Fsp4HI	GCNGC	4 cut(s)	21, 210, 222, 1026
FspBI	CTAG	1 cut(s)	897
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	21, 210, 222, 1026
GsaI	CCCAGC	1 cut(s)	1116
GsuI	CTGGAG	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	307, 1012, 1028
HapII	CCGG	2 cut(s)	200, 1009
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	8 cut(s)	52, 940, 985, 1100, 1253, 1312, 1435, 1536
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	1448
HinfI	GANTC	3 cut(s)	40, 251, 626
HpaII	CCGG	2 cut(s)	200, 1009
HphI	GGTGA	3 cut(s)	268, 998, 1267
Hpy188I	TCNGA	6 cut(s)	412, 481, 603, 618, 700, 978
Hpy188III	TCNNGA	6 cut(s)	55, 569, 719, 902, 1385, 1510
HpyAV	CCTTC	6 cut(s)	346, 411, 772, 958, 1039, 1140
HpyCH4III	ACNGT	3 cut(s)	637, 665, 713
HpyCH4IV	ACGT	2 cut(s)	542, 1209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 1502
HpyF3I	CTNAG	3 cut(s)	615, 735, 1033
HpySE526I	ACGT	2 cut(s)	542, 1209
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	8 cut(s)	52, 940, 985, 1100, 1253, 1312, 1435, 1536
HspAI	GCGC	1 cut(s)	264
KasI	GGCGCC	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	1074
Ksp22I	TGATCA	2 cut(s)	438, 1300
Kzo9I	GATC	4 cut(s)	369, 438, 650, 1300
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	7, 196, 233
LweI	GCATC	5 cut(s)	896, 1117, 1230, 1306, 1345
MaeI	CTAG	1 cut(s)	897
MaeII	ACGT	2 cut(s)	542, 1209
MaeIII	GTNAC	2 cut(s)	122, 659
MalI	GATC	4 cut(s)	371, 440, 652, 1302
MboI	GATC	4 cut(s)	369, 438, 650, 1300
MboII	GAAGA	4 cut(s)	193, 379, 621, 1136
MfeI	CAATTG	1 cut(s)	654
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	2 cut(s)	360, 834
Mph1103I	ATGCAT	4 cut(s)	50, 349, 1321, 1534
MroXI	GAANNNNTTC	2 cut(s)	486, 1267
MseI	TTAA	9 cut(s)	389, 453, 500, 672, 995, 1196, 1293, 1338, 1452
MspI	CCGG	2 cut(s)	200, 1009
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	4 cut(s)	320, 736, 1319, 1427
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 218, 1502
NarI	GGCGCC	1 cut(s)	264
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	4 cut(s)	369, 438, 650, 1300
NlaIII	CATG	8 cut(s)	52, 940, 985, 1100, 1253, 1312, 1435, 1536
NlaIV	GGNNCC	3 cut(s)	265, 1053, 1072
NmeAIII	GCCGAG	1 cut(s)	292
NsiI	ATGCAT	4 cut(s)	50, 349, 1321, 1534
NspI	RCATGY	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	307
PctI	GAATGC	4 cut(s)	320, 736, 1319, 1427
PdmI	GAANNNNTTC	2 cut(s)	486, 1267
PfeI	GAWTC	2 cut(s)	40, 251
PkrI	GCNGC	4 cut(s)	22, 211, 223, 1027
PleI	GAGTC	1 cut(s)	634
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	634
PpuMI	RGGWCCY	1 cut(s)	1051
PshBI	ATTAAT	1 cut(s)	1196
Psp5II	RGGWCCY	1 cut(s)	1051
PspFI	CCCAGC	1 cut(s)	1112
PspN4I	GGNNCC	3 cut(s)	265, 1053, 1072
PspPI	GGNCC	1 cut(s)	1051
PspPPI	RGGWCCY	1 cut(s)	1051
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	622
RsaI	GTAC	6 cut(s)	745, 768, 1072, 1166, 1208, 1418
RsaNI	GTAC	6 cut(s)	744, 767, 1071, 1165, 1207, 1417
SaqAI	TTAA	9 cut(s)	389, 453, 500, 672, 995, 1196, 1293, 1338, 1452
SatI	GCNGC	4 cut(s)	21, 210, 222, 1026
Sau3AI	GATC	4 cut(s)	369, 438, 650, 1300
Sau96I	GGNCC	1 cut(s)	1051
SchI	GAGTC	1 cut(s)	635
SfaNI	GCATC	5 cut(s)	896, 1117, 1230, 1306, 1345
SfcI	CTRYAG	1 cut(s)	491
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	1051
SmlI	CTYRAG	1 cut(s)	1383
SmoI	CTYRAG	1 cut(s)	1383
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	2 cut(s)	641, 1025
SspDI	GGCGCC	1 cut(s)	263
SspI	AATATT	3 cut(s)	774, 1226, 1267
SspMI	CTAG	1 cut(s)	897
StuI	AGGCCT	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	637, 665, 713
TaiI	ACGT	2 cut(s)	545, 1212
TaqI	TCGA	3 cut(s)	150, 550, 1057
TatI	WGTACW	1 cut(s)	1164
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	2 cut(s)	40, 251
Tru1I	TTAA	9 cut(s)	389, 453, 500, 672, 995, 1196, 1293, 1338, 1452
Tru9I	TTAA	9 cut(s)	389, 453, 500, 672, 995, 1196, 1293, 1338, 1452
TscAI	CASTG	2 cut(s)	22, 379
TseI	GCWGC	3 cut(s)	20, 209, 221
TspDTI	ATGAA	8 cut(s)	17, 209, 327, 738, 743, 1085, 1406, 1420
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	2 cut(s)	22, 379
VpaK11BI	GGWCC	1 cut(s)	1051
VspI	ATTAAT	1 cut(s)	1196
XapI	RAATTY	3 cut(s)	470, 1084, 1295
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	2 cut(s)	486, 1267
XspI	CTAG	1 cut(s)	897
Zsp2I	ATGCAT	4 cut(s)	50, 349, 1321, 1534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.