Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

87061604 .. 87064375

Gene Structure 2772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGAATGATGTTGTGGGTTCTGTGTGTGATGCTAAGTTAAATGGTCTTGATGAGAAGTTAGATACTGGGAAGGGAGAGAGTTCTGATAAGAGGGCAGAGGTGAATAGTAGAGATGGTAGAGGGTTCAATGAGTATGAGAGTGTTATTGTTAAGCAAGATGATCAGGGACCGAGTTTGTGTGGGAAAAGAAGAGAATACCATGCACTCTGCATGTTTGATACAGTCCCGCTATCAGATGGGTTGTGTAACGCAGTAACGACCATTGTTGCTCCAATGAGCATTAAAGACAAAGGTGGAGGACTCGCTACTCATCGTGAAATTGTTGATGTTTCTCTCCTGTCAACTGAACTCTTGTCTTCTTCTATTCCTGTTCTCATGGAAACTGATGGAGGAGAGAGGAATTTAGTCATGACAGATGATAAGGAGTTTGAGATTCAAAGCACTGAAGGGCTGAATAGTGTGGTGTGGAAGAATAAGGCTCAATCACATTATTTCTTTCACTCTAGCTTTGATAATGGATTACCTGTTGGCAACACACTTTTCGGTTCTGAGGCTCATACTTCCATGGATGTTGGCAACAGATTACTTAATGATAATTTTAGTGAAGAAAATGTTTATGCGGATGACAACTATGAGAAAATGCAAGTGAATTTTGAAAGGGTGCTGGAGTTAATATTGGAGAAGTGGAAATCAAGAGTTACTGCCAAAACACAATCTCAAGCAAAGTTAGTGCAATGGTTTATTCATTGCTTGCAGCTTTGTCATTGTACGATGAAAGATATTATACTCTTTTGCAAGGAAGCATTCGATGGAATTGAAATTAGGCCTCCTGATGATGGGGAATGGTTGGATTTGGATGGAGAAACGTATTGTCGAGCTGTTATAGAATTCTTTGATAACAAAAATGTGAAAGAGTTGGCAACTTTGATTTTGAAAGCTCAGAAGCTACAGTCTTCTACAATTGTGGTAGATAGATCAGGTTGTTGCGGTATTGTTAATGCTTGTGTTGGTATTGAAATATCAGATAAAGAACACAGCACTCTTGATGAAATGAATGCTCTGGGAGGTATTTTGGCCCTGGATGTTCATGTGCCAATATTGAATGCTCTTTGCAAAGAGCATAGAACTGCTGAAGCCACTCAACTGGTTATGGATTTTAGTAACTCGAAGCTTAAGTTGGACATGGTAACATATAATACTCTAATAGAAGCATCTATGTCTAGTCAAGATTTTCAATCGGCTTTTGATGGGGTATTGTGTGACATGATTAAGCTCTATGTCATGATTTATAGTGCTTTCAATGATAATGCTCGGAATTTGCTTCATGATGACACATTTGGGGTAATGGGATCTGTGGCGAGTTCTCTTGTTGATATGTATGTCCACTGTGGAACTTTGCAGAATGCATACAACATATATAATTGTGTTAGAAACAAAAGTCTAATATTTTGGACTACCATGATCAATGCGTATGGGATGCATGGTCATGGCAATGGAGCCATTGACCTATTCGAGACGATGCATGACCAAAAGATTGTTCCTGATCATATTATGTTTTTGGCTCAAGTCTTTGACATTAAGGGTCAAATGGAAACTGATGATGGGCTTGCAAACAATTTGGAGAAGATATGTTTGCTTATTGCAATTGCAATTATTCAATTGCTAATAGTTGCATTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

560

Amino Acids

62.35

Weight (kDa)

4.79

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	482 - 516	7.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	227, 620, 987
AclWI	GGATC	1 cut(s)	1357
AcsI	RAATTY	4 cut(s)	400, 649, 887, 1315
AcuI	CTGAAG	2 cut(s)	465, 1152
AfaI	GTAC	1 cut(s)	769
AfiI	CCNNNNNNNGG	1 cut(s)	836
AflII	CTTAAG	1 cut(s)	1172
AjnI	CCWGG	1 cut(s)	1077
AjuI	GAANNNNNNNTTGG	4 cut(s)	1160, 1192, 1521, 1553
AluBI	AGCT	7 cut(s)	507, 757, 878, 938, 946, 1171, 1273
AluI	AGCT	7 cut(s)	507, 757, 878, 938, 946, 1171, 1273
Alw26I	GTCTC	1 cut(s)	1508
AlwI	GGATC	1 cut(s)	1357
AoxI	GGCC	2 cut(s)	824, 1074
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	4 cut(s)	400, 649, 887, 1315
AspS9I	GGNCC	2 cut(s)	167, 1075
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	348, 945
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	8 cut(s)	107, 230, 380, 803, 830, 851, 1241, 1595
BciT130I	CCWGG	1 cut(s)	1079
BclI	TGATCA	3 cut(s)	160, 1461, 1543
BcoDI	GTCTC	1 cut(s)	1508
BfaI	CTAG	2 cut(s)	504, 1221
BfmI	CTRYAG	1 cut(s)	947
BfrI	CTTAAG	1 cut(s)	1172
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	1079
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 1075
BmiI	GGNNCC	2 cut(s)	168, 1498
BmrFI	CCNGG	1 cut(s)	1079
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	4 cut(s)	19, 1220, 1467, 1509
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	348, 945
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	702, 1548
BsaJI	CCNNGG	2 cut(s)	564, 1077
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse1I	ACTGG	2 cut(s)	70, 1149
Bse3DI	GCAATG	3 cut(s)	740, 745, 1498
BseBI	CCWGG	1 cut(s)	1079
BseDI	CCNNGG	2 cut(s)	564, 1077
BseGI	GGATG	5 cut(s)	574, 628, 862, 1087, 1482
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMI	GCAATG	3 cut(s)	740, 745, 1498
BseMII	CTCAG	2 cut(s)	540, 953
BseNI	ACTGG	2 cut(s)	70, 1149
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	766
BshFI	GGCC	2 cut(s)	826, 1076
BslFI	GGGAC	2 cut(s)	180, 209
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	1 cut(s)	1508
BsmBI	CGTCTC	1 cut(s)	1508
BsmFI	GGGAC	2 cut(s)	180, 209
BsmI	GAATGC	4 cut(s)	803, 1060, 1108, 1408
BsnI	GGCC	2 cut(s)	826, 1076
Bsp143I	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	3 cut(s)	227, 620, 987
BspANI	GGCC	2 cut(s)	826, 1076
BspCNI	CTCAG	2 cut(s)	541, 952
BspHI	TCATGA	3 cut(s)	408, 1281, 1324
BspLI	GGNNCC	2 cut(s)	168, 1498
BspPI	GGATC	1 cut(s)	1357
BspTI	CTTAAG	1 cut(s)	1172
BsrDI	GCAATG	3 cut(s)	740, 745, 1498
BsrI	ACTGG	2 cut(s)	70, 1149
BssECI	CCNNGG	2 cut(s)	564, 1077
BssMI	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	1079
Bst4CI	ACNGT	3 cut(s)	223, 951, 1388
Bst6I	CTCTTC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	1172
BstC8I	GCNNGC	2 cut(s)	752, 1608
BstDEI	CTNAG	3 cut(s)	33, 549, 939
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	5 cut(s)	574, 628, 862, 1087, 1482
BstKTI	GATC	5 cut(s)	163, 977, 1352, 1464, 1546
BstMAI	GTCTC	1 cut(s)	1508
BstMBI	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
BstNI	CCWGG	1 cut(s)	1079
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	1077
BstSFI	CTRYAG	1 cut(s)	947
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	2 cut(s)	348, 945
BstX2I	RGATCY	1 cut(s)	1349
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BstYI	RGATCY	1 cut(s)	1349
BsuRI	GGCC	2 cut(s)	826, 1076
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	5 cut(s)	574, 628, 862, 1087, 1482
BtsIMutI	CAGTG	2 cut(s)	441, 1384
Cac8I	GCNNGC	2 cut(s)	752, 1608
CciI	TCATGA	3 cut(s)	408, 1281, 1324
Cfr13I	GGNCC	2 cut(s)	167, 1075
Csp6I	GTAC	1 cut(s)	768
CviQI	GTAC	1 cut(s)	768
DdeI	CTNAG	3 cut(s)	33, 549, 939
DpnI	GATC	5 cut(s)	162, 976, 1351, 1463, 1545
DpnII	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
DraI	TTTAAA	1 cut(s)	1678
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	465, 1152
EcoRI	GAATTC	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	1077
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	3 cut(s)	1408, 1482, 1524
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	1508
FaqI	GGGAC	2 cut(s)	180, 209
FauI	CCCGC	1 cut(s)	234
FbaI	TGATCA	3 cut(s)	160, 1461, 1543
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	5 cut(s)	581, 635, 869, 1094, 1489
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	2 cut(s)	504, 1221
GluI	GCNGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	826, 1076
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	2 cut(s)	300, 433
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	342, 1384
Hpy188I	TCNGA	6 cut(s)	85, 235, 550, 942, 1024, 1314
Hpy8I	GTNNAC	2 cut(s)	342, 1384
HpyAV	CCTTC	2 cut(s)	64, 440
HpyCH4III	ACNGT	3 cut(s)	223, 951, 1388
HpyCH4IV	ACGT	1 cut(s)	866
HpyF3I	CTNAG	3 cut(s)	33, 549, 939
HpySE526I	ACGT	1 cut(s)	866
Ksp22I	TGATCA	3 cut(s)	160, 1461, 1543
Kzo9I	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
LmnI	GCTCC	2 cut(s)	274, 1496
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	4 cut(s)	19, 1220, 1467, 1509
MaeI	CTAG	2 cut(s)	504, 1221
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	6 cut(s)	245, 253, 697, 1160, 1186, 1259
MalI	GATC	5 cut(s)	162, 976, 1351, 1463, 1545
MboI	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
MboII	GAAGA	7 cut(s)	201, 348, 351, 481, 617, 945, 1636
MfeI	CAATTG	3 cut(s)	960, 1644, 1658
MflI	RGATCY	1 cut(s)	1349
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	2 cut(s)	828, 1158
MnlI	CCTC	9 cut(s)	84, 91, 113, 290, 383, 390, 544, 837, 1058
Mph1103I	ATGCAT	3 cut(s)	1408, 1482, 1524
MslI	CAYNNNNRTG	3 cut(s)	1485, 1491, 1678
MspCI	CTTAAG	1 cut(s)	1172
MspR9I	CCNGG	1 cut(s)	1079
MunI	CAATTG	3 cut(s)	960, 1644, 1658
Mva1269I	GAATGC	4 cut(s)	803, 1060, 1108, 1408
MvaI	CCWGG	1 cut(s)	1079
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
NlaIV	GGNNCC	2 cut(s)	168, 1498
NmuCI	GTSAC	1 cut(s)	1259
NsiI	ATGCAT	3 cut(s)	1408, 1482, 1524
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	3 cut(s)	408, 1281, 1324
PceI	AGGCCT	1 cut(s)	826
PctI	GAATGC	4 cut(s)	803, 1060, 1108, 1408
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	1077
PspGI	CCWGG	1 cut(s)	1077
PspN4I	GGNNCC	2 cut(s)	168, 1498
PspPI	GGNCC	2 cut(s)	167, 1075
PsuI	RGATCY	1 cut(s)	1349
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
RseI	CAYNNNNRTG	3 cut(s)	1485, 1491, 1678
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	5 cut(s)	160, 974, 1349, 1461, 1543
Sau96I	GGNCC	2 cut(s)	167, 1075
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	1079
SfaNI	GCATC	4 cut(s)	19, 1220, 1467, 1509
SfcI	CTRYAG	1 cut(s)	947
SinI	GGWCC	1 cut(s)	167
SmiI	ATTTAAAT	1 cut(s)	1678
SmiMI	CAYNNNNRTG	3 cut(s)	1485, 1491, 1678
SmlI	CTYRAG	3 cut(s)	717, 1172, 1563
SmoI	CTYRAG	3 cut(s)	717, 1172, 1563
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	3 cut(s)	227, 620, 987
SspI	AATATT	3 cut(s)	675, 1098, 1446
SspMI	CTAG	2 cut(s)	504, 1221
StuI	AGGCCT	1 cut(s)	826
StyD4I	CCNGG	1 cut(s)	1077
StyI	CCWWGG	1 cut(s)	564
SwaI	ATTTAAAT	1 cut(s)	1678
TaaI	ACNGT	3 cut(s)	223, 951, 1388
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	4 cut(s)	807, 874, 1166, 1512
TaqII	GACCGA	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	433
TscAI	CASTG	2 cut(s)	448, 1391
TseFI	GTSAC	1 cut(s)	1259
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	1 cut(s)	1259
TspDTI	ATGAA	7 cut(s)	17, 734, 788, 1062, 1067, 1076, 1313
TspRI	CASTG	2 cut(s)	448, 1391
Vha464I	CTTAAG	1 cut(s)	1172
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	4 cut(s)	400, 649, 887, 1315
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	2 cut(s)	504, 1221
Zsp2I	ATGCAT	3 cut(s)	1408, 1482, 1524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.