Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

22982344 .. 22984724

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGCACTCTTTCAGAGATTTTATCTGCACAAGGTGAAGATTGTCTGAGGAGGGGAAAAGTTGTAGTAAGTAAGACCGAGAAACTGCAGGATGTGTTTTTGGAGGTGATCTTTTCTTCAGGGAAAAGAAAAGGAAGTTACCTGGTCCAGCCTTGTCTTTCCTTTACTCCTAAAGAGGATATAAAACTAGCAGAAGCGGCTCTTCCTAGATATGCTGAAAACATCGCAGTAGCTGTTGGTGCCCTTTGTGCGGTCTTGCCTCCGTCTGCTCATACTGTTCAACCAGCTGCTTCAAAATGTGTATTGAGCTGGCTGGTCCAGCCTGAGCATCAACACCGCAAATGGTCTGCTGCAATTTCTCTTGGATTAATATCACGTTGCCTACATGTTGGTAATCATAAGAAAAAGTTTGAGAATATCGTAAGACTTGTTGAGGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

9.35

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	3 cut(s)	197, 251, 337
AcuI	CTGAAG	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	281, 294
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	233, 287, 309
AluI	AGCT	3 cut(s)	233, 287, 309
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	287, 350
AseI	ATTAAT	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	145, 316
AsuHPI	GGTGA	2 cut(s)	47, 118
AvaII	GGWCC	2 cut(s)	145, 316
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	274, 337
BciT130I	CCWGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	188, 207
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	198, 288, 351
BlsI	GCNGC	3 cut(s)	199, 289, 352
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	2 cut(s)	145, 316
BmgT120I	GGNCC	2 cut(s)	145, 316
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	38, 315
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	274, 337
BsgI	GTGCAG	1 cut(s)	12
BshNI	GGYRCC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	3 cut(s)	197, 251, 337
BspCNI	CTCAG	2 cut(s)	39, 316
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	239
BssMI	GATC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	47, 324
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 239, 248, 319
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	274, 337
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	145, 316
CsiI	ACCWGGT	1 cut(s)	141
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	151, 200, 233, 287, 309, 313, 322
CviKI_1	RGCY	7 cut(s)	151, 200, 233, 287, 309, 313, 322
DdeI	CTNAG	2 cut(s)	47, 324
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DraIII	CACNNNGTG	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	145, 316
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	389
FaiI	YATR	5 cut(s)	182, 213, 273, 387, 399
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	198, 288, 351
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	198, 288, 351
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	188, 207
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	198, 288, 351
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	47, 118
Hpy188I	TCNGA	2 cut(s)	16, 48
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	29, 88, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 239, 248, 319
HpyF3I	CTNAG	2 cut(s)	47, 324
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	108
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	2 cut(s)	274, 337
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	141
MaeI	CTAG	2 cut(s)	188, 207
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	3 cut(s)	50, 108, 194
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	6 cut(s)	42, 45, 97, 169, 270, 427
MseI	TTAA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	197, 239, 248, 319
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	199, 289, 352
PscI	ACATGT	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	145, 316
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	3 cut(s)	198, 288, 351
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	145, 316
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	37, 108, 144, 235, 289, 311, 379, 438
SexAI	ACCWGGT	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	2 cut(s)	145, 316
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	3 cut(s)	197, 251, 337
SspMI	CTAG	2 cut(s)	188, 207
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	379
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	354
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	2 cut(s)	287, 350
TspGWI	ACGGA	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	145, 316
VspI	ATTAAT	1 cut(s)	368
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	2 cut(s)	188, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.