Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

43591875 .. 43595747

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGACACAAGTGCAATTATTCAATTACATTCACCGAATTGGTTGGTCCAACCTGAGCATGAACACTGCAAATGGTCTACTGCAATTTTTCTTGCATTAATCTCAAGTTGCCTACATGTTACCAATCATAAGCAAAAGTTTGAGAATATCGCAAGACTTGTCGAGGTGTTGTGTAGTAGCAAAAGCATCCTTGTGAAAGGAGCCGGTGGGATTGGCTTAGGGTTTTCTTGCCAAGATCTTCTTACTTGGGCCAATGCTTCCGATAATTCTATCATGGAAACAGACCTAGACAAGCTGTTAGAAAGGGACTTGCTTGGTGACATAGCTAAGGCATTATTATTTATGATATTCTGGGTTAGGGGGCTTGATGCTATTTTCAAGATAAAAGATGTGATATCATGGGTTTTGCATATGAATGGAATGGTTCAAGTGGGTCCCGCAGATCACTCCGCATTTCGGGGTGAATTGCTACATACAAGGGGTGGATGCAATGATAGGGAATGTCCCGGAGTTCTTACCGAGACTAATAGATGTGAAGATGTGGTGGTGTTTAAGGGCACCGATGTTGGTGGTGATCAATCTAAATTACATGCACACAACTTATCACCAATGTCCTACGCGAGTGACTCCGGGCATGCGGTTGAACTTGGCAACAGTGCTTCTTTGCTGCTTCATTATTTTTTTTGCAATTACCATATCAATGCGCGAGGACATCAATTGGGAGCTGAGATGATATCTTCATATGTTCCTCTTCTTAGTGTAGATGACCTTGCAAACCAGCTTGTCGAAGTACTTGATTTGTATAGGCCGAAAGAGGTACCGAGCTTGGGCGGTGACTTGGGTGATAAAGCAAGGGTAAGTTTTGGAAGACAACTCGGGATTGAGGTCAAGCTCGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3730

Protein Analysis

300

Amino Acids

32.98

Weight (kDa)

5.74

Isoelectric Point (pI)

27.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	219 - 281	6.8e-08	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	817
AccB1I	GGYRCC	2 cut(s)	557, 817
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	2 cut(s)	620, 706
AciI	CCGC	4 cut(s)	438, 450, 638, 831
AfaI	GTAC	2 cut(s)	792, 819
AfiI	CCNNNNNNNGG	2 cut(s)	456, 827
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	23, 379, 428, 644
AluBI	AGCT	6 cut(s)	295, 326, 725, 781, 825, 892
AluI	AGCT	6 cut(s)	295, 326, 725, 781, 825, 892
Alw26I	GTCTC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	875
AoxI	GGCC	2 cut(s)	249, 806
ApeKI	GCWGC	1 cut(s)	667
AseI	ATTAAT	1 cut(s)	98
Asp718I	GGTACC	1 cut(s)	817
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	3 cut(s)	46, 249, 434
AsuC2I	CCSGG	2 cut(s)	507, 631
AsuHPI	GGTGA	7 cut(s)	24, 329, 473, 584, 597, 845, 854
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	46, 434
BaeGI	GKGCMC	1 cut(s)	560
BanI	GGYRCC	2 cut(s)	557, 817
BbsI	GAAGAC	1 cut(s)	874
BbvI	GCAGC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	2 cut(s)	507, 631
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	668
BlsI	GCNGC	1 cut(s)	669
BmcAI	AGTACT	1 cut(s)	792
Bme1390I	CCNGG	2 cut(s)	507, 631
Bme18I	GGWCC	2 cut(s)	46, 434
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	3 cut(s)	46, 249, 434
BmiI	GGNNCC	5 cut(s)	202, 435, 436, 559, 819
BmrFI	CCNGG	2 cut(s)	507, 631
BmsI	GCATC	3 cut(s)	195, 358, 476
BpiI	GAAGAC	1 cut(s)	874
Bpu10I	CCTNAGC	3 cut(s)	54, 217, 327
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	2 cut(s)	507, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 827
Bse118I	RCCGGY	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	186, 491
BseLI	CCNNNNNNNGG	2 cut(s)	456, 827
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	45, 717
BseSI	GKGCMC	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	654
Bsh1236I	CGCG	2 cut(s)	620, 706
BshFI	GGCC	2 cut(s)	251, 808
BshNI	GGYRCC	2 cut(s)	557, 817
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	3 cut(s)	204, 507, 630
BslFI	GGGAC	3 cut(s)	320, 420, 489
BslI	CCNNNNNNNGG	2 cut(s)	456, 827
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	3 cut(s)	320, 420, 489
BsnI	GGCC	2 cut(s)	251, 808
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	3 cut(s)	235, 442, 574
BspACI	CCGC	4 cut(s)	438, 450, 638, 831
BspANI	GGCC	2 cut(s)	251, 808
BspCNI	CTCAG	2 cut(s)	46, 718
BspFNI	CGCG	2 cut(s)	620, 706
BspLI	GGNNCC	5 cut(s)	202, 435, 436, 559, 819
BspT107I	GGYRCC	2 cut(s)	557, 817
BsrDI	GCAATG	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	3 cut(s)	235, 442, 574
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	756
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	5 cut(s)	54, 217, 327, 726, 755
BstF5I	GGATG	2 cut(s)	186, 491
BstFNI	CGCG	2 cut(s)	620, 706
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	3 cut(s)	238, 445, 577
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	3 cut(s)	235, 442, 574
BstNSI	RCATGY	3 cut(s)	119, 593, 638
BstSCI	CCNGG	2 cut(s)	505, 629
BstSLI	GKGCMC	1 cut(s)	560
BstUI	CGCG	2 cut(s)	620, 706
BstV1I	GCAGC	1 cut(s)	654
BstV2I	GAAGAC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	251, 808
BtsCI	GGATG	2 cut(s)	186, 491
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 661
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	46, 249, 434
Csp6I	GTAC	2 cut(s)	791, 818
CviAII	CATG	6 cut(s)	59, 116, 274, 399, 590, 635
CviQI	GTAC	2 cut(s)	791, 818
DdeI	CTNAG	5 cut(s)	54, 217, 327, 726, 755
DpnI	GATC	3 cut(s)	237, 444, 576
DpnII	GATC	3 cut(s)	235, 442, 574
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco32I	GATATC	2 cut(s)	396, 735
Eco47I	GGWCC	2 cut(s)	46, 434
Eco88I	CYCGRG	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRV	GATATC	2 cut(s)	396, 735
FaeI	CATG	6 cut(s)	62, 119, 277, 402, 593, 638
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	3 cut(s)	320, 420, 489
FatI	CATG	6 cut(s)	58, 115, 273, 398, 589, 634
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	2 cut(s)	411, 742
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	668
FokI	GGATG	2 cut(s)	173, 498
Fsp4HI	GCNGC	1 cut(s)	668
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	1 cut(s)	668
HaeIII	GGCC	2 cut(s)	251, 808
HapII	CCGG	3 cut(s)	204, 507, 630
HhaI	GCGC	1 cut(s)	706
Hin1II	CATG	6 cut(s)	62, 119, 277, 402, 593, 638
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HinfI	GANTC	1 cut(s)	626
HpaII	CCGG	3 cut(s)	204, 507, 630
HphI	GGTGA	7 cut(s)	24, 329, 473, 584, 597, 845, 854
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	379, 877
Hpy8I	GTNNAC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4V	TGCA	9 cut(s)	14, 69, 83, 95, 409, 489, 593, 687, 773
HpyF3I	CTNAG	5 cut(s)	54, 217, 327, 726, 755
Hsp92II	CATG	6 cut(s)	62, 119, 277, 402, 593, 638
HspAI	GCGC	1 cut(s)	704
KflI	GGGWCCC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	235, 442, 574
LmnI	GCTCC	2 cut(s)	200, 722
LpnPI	CCDG	6 cut(s)	66, 217, 337, 520, 643, 791
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	3 cut(s)	195, 358, 476
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	118, 317, 623, 833
MalI	GATC	3 cut(s)	237, 444, 576
MboI	GATC	3 cut(s)	235, 442, 574
MboII	GAAGA	5 cut(s)	230, 548, 729, 743, 879
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	9 cut(s)	15, 23, 37, 84, 265, 464, 584, 688, 716
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	157, 701, 759, 808, 877
MseI	TTAA	2 cut(s)	98, 552
MslI	CAYNNNNRTG	3 cut(s)	191, 414, 699
MspI	CCGG	3 cut(s)	204, 507, 630
MspR9I	CCNGG	2 cut(s)	507, 631
MunI	CAATTG	1 cut(s)	716
MvnI	CGCG	2 cut(s)	620, 706
NciI	CCSGG	2 cut(s)	507, 631
NdeI	CATATG	2 cut(s)	411, 742
NdeII	GATC	3 cut(s)	235, 442, 574
NlaIII	CATG	6 cut(s)	62, 119, 277, 402, 593, 638
NlaIV	GGNNCC	5 cut(s)	202, 435, 436, 559, 819
NmuCI	GTSAC	3 cut(s)	317, 623, 833
NspI	RCATGY	3 cut(s)	119, 593, 638
PaeI	GCATGC	1 cut(s)	638
PciI	ACATGT	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	669
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
PpuMI	RGGWCCY	1 cut(s)	434
PscI	ACATGT	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	434
PspN4I	GGNNCC	5 cut(s)	202, 435, 436, 559, 819
PspPI	GGNCC	3 cut(s)	46, 249, 434
PspPPI	RGGWCCY	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	792, 819
RsaNI	GTAC	2 cut(s)	791, 818
RseI	CAYNNNNRTG	3 cut(s)	191, 414, 699
SaqAI	TTAA	2 cut(s)	98, 552
SatI	GCNGC	1 cut(s)	668
Sau3AI	GATC	3 cut(s)	235, 442, 574
Sau96I	GGNCC	3 cut(s)	46, 249, 434
ScaI	AGTACT	1 cut(s)	792
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	507, 631
SduI	GDGCHC	1 cut(s)	560
SfaNI	GCATC	3 cut(s)	195, 358, 476
SinI	GGWCC	2 cut(s)	46, 434
SmiMI	CAYNNNNRTG	3 cut(s)	191, 414, 699
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	9 cut(s)	15, 23, 37, 84, 265, 464, 584, 688, 716
SsiI	CCGC	4 cut(s)	438, 450, 638, 831
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	505, 629
TaaI	ACNGT	1 cut(s)	656
TaqI	TCGA	2 cut(s)	162, 786
TasI	AATT	9 cut(s)	15, 23, 37, 84, 265, 464, 584, 688, 716
TatI	WGTACW	1 cut(s)	790
Tru1I	TTAA	2 cut(s)	98, 552
Tru9I	TTAA	2 cut(s)	98, 552
TscAI	CASTG	2 cut(s)	71, 661
TseFI	GTSAC	3 cut(s)	317, 623, 833
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	3 cut(s)	317, 623, 833
TspDTI	ATGAA	4 cut(s)	75, 428, 662, 729
TspRI	CASTG	2 cut(s)	71, 661
VpaK11BI	GGWCC	2 cut(s)	46, 434
VspI	ATTAAT	1 cut(s)	98
XceI	RCATGY	3 cut(s)	119, 593, 638
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.