Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

3474381 .. 3475844

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAAGGGGATTGGAAGAGAAAAGAGAGTGGCAATTGGCAATGCAGAGGAAGAAAGAAAAAAGTTTGAATCTTTGGATGAGAGAATGTGGAGAAAACTAGAAGCTCTCACTCATCTTCTTCCCCACAGAAGAGGAAGAGCCTTCTCCTCAACACCTGAAATCCCAACCCTCTACTCCTTCCTCCAACCTTCAATCTTTGCCCTCAAGAGGGACCCACCTCACTCCTCCTCCCTCCAATCCCACGGCGACCTCCCAACCCCGCCGCCCAGAACCCTCTCCCCCGACCACATCGCCGCTCTCGAGACCGCCCTCCACAAGTCCCTCATAACCCACGACACAGATGAGGCCTGGAAGTCCTTCAAGACCTTCACCGGCACCTCCGCCTTCCCCAGTAAGTCCCTCACCAATTCTCTAATTACCCATTTGTCCTCGCTCGGGGACGTTCACAATCTCAAGAGGGCTTTTGCCACGACTGTTTATGTCGTGGAGAAAAACCCAGGATTTTTGGAGTTTAAAACTGTTGGGGTTGTGTTGGATGCTATGAAATGTGCCAATACTGCTGCCCCTGCTTTTGCTTTGGTTAAATGCATGTTCAAGAACCGGTTTTTCTTGCCGTTTAGTGTGTGGGGCAGTGTTCTGGTTGATATCAGTAGGAAAAATGGTAACTTTGTAGCTTTTTTACGGGTTTTTGAAGAGAATTGTAGGATTGCTTTGGATGAGAAGTTGGAGTTTATGAAACCGGGTTTGGCTGCTTGTAATGCGGCGTTGGAGGGGTGCTGTCGTGAGCTTGAATCAGTGAGTGATGCCGAGAAAGTTGTTGAGACGATGGCAGTTTTGGGCGTTCGCCCTGATGAGTCGAGTTTTGGTTTTCTTGCTTATTTGTACGCATTGAAGGGTCTCGAGGAAAAAATAACTGAGTTAGAGGGATTGATGGGTGGGTTTGGTTTTTTGGATAAAAGGATGTTTCGGAGTAGTTTGATTAAAGGCTATGTTAAGTCCGGAAAATTAGAATCTGTTTCAGCATCTATTCTTCGTCGTCTGAGTGAAGGAGATGGCGAATGTTTGAATTTGGGTGAAGAAACTTATTGTGAAGTTGTTAAAGGTTATCTTGCAAATACAGGTGTGAAGGAGTTAGCGACATTGATCGATCGAAGCTCAAAAGTTAGAGTCTTCAAGAGTCGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

396

Amino Acids

43.85

Weight (kDa)

8.73

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	90 - 246	8.3e-82	At1g68980, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	998
AciI	CCGC	6 cut(s)	260, 263, 294, 306, 381, 761
AcsI	RAATTY	1 cut(s)	1066
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	3 cut(s)	207, 208, 435
AgeI	ACCGGT	1 cut(s)	600
AgsI	TTSAA	9 cut(s)	68, 192, 361, 595, 692, 791, 892, 1066, 1174
AjnI	CCWGG	2 cut(s)	347, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	4 cut(s)	104, 674, 787, 1155
AluI	AGCT	4 cut(s)	104, 674, 787, 1155
Alw26I	GTCTC	3 cut(s)	296, 815, 902
Ama87I	CYCGRG	3 cut(s)	299, 434, 899
Aor13HI	TCCGGA	1 cut(s)	998
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	560, 749
ApoI	RAATTY	1 cut(s)	1066
AsiGI	ACCGGT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	361, 394, 1085
AvaI	CYCGRG	3 cut(s)	299, 434, 899
AvaII	GGWCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	1162
BbvI	GCAGC	2 cut(s)	547, 736
BccI	CCATC	3 cut(s)	820, 925, 1046
BceAI	ACGGC	2 cut(s)	259, 598
BciT130I	CCWGG	2 cut(s)	349, 498
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	3 cut(s)	296, 815, 902
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	5 cut(s)	263, 294, 561, 750, 762
BlsI	GCNGC	5 cut(s)	264, 295, 562, 751, 763
Bme1390I	CCNGG	3 cut(s)	349, 498, 741
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	3 cut(s)	299, 434, 899
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	3 cut(s)	212, 213, 376
BmrFI	CCNGG	3 cut(s)	349, 498, 741
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	3 cut(s)	526, 793, 1031
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	1162
BpuEI	CTTGAG	2 cut(s)	188, 437
BpuMI	CCSGG	1 cut(s)	741
Bsa29I	ATCGAT	1 cut(s)	1146
BsaI	GGTCTC	2 cut(s)	296, 902
BsaJI	CCNNGG	2 cut(s)	241, 496
BsaWI	WCCGGW	2 cut(s)	600, 998
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 208, 435
Bse118I	RCCGGY	2 cut(s)	371, 600
Bse1I	ACTGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	998
BseBI	CCWGG	2 cut(s)	349, 498
BseCI	ATCGAT	1 cut(s)	1146
BseDI	CCNNGG	2 cut(s)	241, 496
BseGI	GGATG	4 cut(s)	82, 541, 721, 966
BseLI	CCNNNNNNNGG	3 cut(s)	207, 208, 435
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	906, 1031
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	3 cut(s)	136, 214, 217
BseXI	GCAGC	2 cut(s)	547, 736
Bsh1285I	CGRYCG	1 cut(s)	1150
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	374
BshTI	ACCGGT	1 cut(s)	600
BshVI	ATCGAT	1 cut(s)	1146
BsiEI	CGRYCG	1 cut(s)	1150
BsiHKCI	CYCGRG	3 cut(s)	299, 434, 899
BsiSI	CCGG	4 cut(s)	372, 601, 740, 999
BslFI	GGGAC	4 cut(s)	224, 304, 382, 452
BslI	CCNNNNNNNGG	3 cut(s)	207, 208, 435
BsmAI	GTCTC	3 cut(s)	296, 815, 902
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	4 cut(s)	224, 304, 382, 452
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	2 cut(s)	296, 902
BsoBI	CYCGRG	3 cut(s)	299, 434, 899
Bsp13I	TCCGGA	1 cut(s)	998
Bsp143I	GATC	2 cut(s)	1143, 1147
BspACI	CCGC	6 cut(s)	260, 263, 294, 306, 381, 761
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	907, 1032
BspDI	ATCGAT	1 cut(s)	1146
BspEI	TCCGGA	1 cut(s)	998
BspLI	GGNNCC	3 cut(s)	212, 213, 376
BspQI	GCTCTTC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	374
BspTNI	GGTCTC	2 cut(s)	296, 902
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	371, 600
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	371, 600
BssECI	CCNNGG	2 cut(s)	241, 496
BssMI	GATC	2 cut(s)	1143, 1147
Bst2UI	CCWGG	2 cut(s)	349, 498
Bst4CI	ACNGT	2 cut(s)	475, 520
Bst6I	CTCTTC	4 cut(s)	10, 124, 130, 687
BstDEI	CTNAG	2 cut(s)	915, 1040
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	82, 541, 721, 966
BstKTI	GATC	2 cut(s)	1146, 1150
BstMAI	GTCTC	3 cut(s)	296, 815, 902
BstMBI	GATC	2 cut(s)	1143, 1147
BstMCI	CGRYCG	1 cut(s)	1150
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 566, 758
BstNI	CCWGG	2 cut(s)	349, 498
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	347, 496, 739
BstV1I	GCAGC	2 cut(s)	547, 736
BstV2I	GAAGAC	1 cut(s)	1162
Bsu15I	ATCGAT	1 cut(s)	1146
BsuRI	GGCC	1 cut(s)	347
BsuTUI	ATCGAT	1 cut(s)	1146
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	4 cut(s)	82, 541, 721, 966
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	637, 801
Cfr10I	RCCGGY	2 cut(s)	371, 600
Cfr13I	GGNCC	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	1146
Csp6I	GTAC	1 cut(s)	883
CspAI	ACCGGT	1 cut(s)	600
CviAII	CATG	1 cut(s)	589
CviJI	RGCY	9 cut(s)	104, 140, 347, 461, 674, 749, 787, 987, 1155
CviKI_1	RGCY	9 cut(s)	104, 140, 347, 461, 674, 749, 787, 987, 1155
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	2 cut(s)	915, 1040
DpnI	GATC	2 cut(s)	1145, 1149
DpnII	GATC	2 cut(s)	1143, 1147
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	4 cut(s)	10, 124, 130, 687
EarI	CTCTTC	4 cut(s)	10, 124, 130, 687
EciI	GGCGGA	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	2 cut(s)	296, 902
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	3 cut(s)	299, 434, 899
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	347, 496
EcoRV	GATATC	1 cut(s)	646
EcoT22I	ATGCAT	1 cut(s)	590
Esp3I	CGTCTC	1 cut(s)	815
FaeI	CATG	1 cut(s)	592
FaiI	YATR	6 cut(s)	326, 480, 542, 590, 734, 990
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	4 cut(s)	224, 304, 382, 452
FatI	CATG	1 cut(s)	588
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	5 cut(s)	263, 294, 561, 750, 762
FokI	GGATG	4 cut(s)	89, 548, 728, 973
Fsp4HI	GCNGC	5 cut(s)	263, 294, 561, 750, 762
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	5 cut(s)	263, 294, 561, 750, 762
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	4 cut(s)	372, 601, 740, 999
Hin1II	CATG	1 cut(s)	592
HinfI	GANTC	6 cut(s)	68, 791, 854, 1010, 1167, 1177
HpaII	CCGG	4 cut(s)	372, 601, 740, 999
HphI	GGTGA	3 cut(s)	361, 394, 1085
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	969, 1041
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	9 cut(s)	151, 187, 198, 367, 376, 394, 886, 1040, 1120
HpyCH4III	ACNGT	2 cut(s)	475, 520
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	44, 588, 1112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 566, 758
HpyF3I	CTNAG	2 cut(s)	915, 1040
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	592
KflI	GGGWCCC	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	998
Kzo9I	GATC	2 cut(s)	1143, 1147
LguI	GCTCTTC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	547, 736
LweI	GCATC	3 cut(s)	526, 793, 1031
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	2 cut(s)	1145, 1149
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	1143, 1147
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	6 cut(s)	33, 406, 414, 697, 1004, 1066
MlyI	GAGTC	3 cut(s)	863, 1176, 1186
MmeI	TCCRAC	4 cut(s)	208, 513, 705, 747
Mph1103I	ATGCAT	1 cut(s)	590
MroI	TCCGGA	1 cut(s)	998
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	5 cut(s)	513, 582, 981, 993, 1098
MspI	CCGG	4 cut(s)	372, 601, 740, 999
MspR9I	CCNGG	3 cut(s)	349, 498, 741
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	2 cut(s)	349, 498
MwoI	GCNNNNNNNGC	3 cut(s)	557, 566, 758
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	2 cut(s)	1143, 1147
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	3 cut(s)	212, 213, 376
NmeAIII	GCCGAG	1 cut(s)	832
NsiI	ATGCAT	1 cut(s)	590
NspI	RCATGY	1 cut(s)	592
PaeR7I	CTCGAG	2 cut(s)	299, 899
PceI	AGGCCT	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	3 cut(s)	68, 791, 1010
PinAI	ACCGGT	1 cut(s)	600
PkrI	GCNGC	5 cut(s)	264, 295, 562, 751, 763
Ple19I	CGATCG	1 cut(s)	1150
PleI	GAGTC	3 cut(s)	862, 1175, 1185
PpsI	GAGTC	3 cut(s)	862, 1175, 1185
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	347, 496
PspGI	CCWGG	2 cut(s)	347, 496
PspN4I	GGNNCC	3 cut(s)	212, 213, 376
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	1150
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	5 cut(s)	513, 582, 981, 993, 1098
SatI	GCNGC	5 cut(s)	263, 294, 561, 750, 762
Sau3AI	GATC	2 cut(s)	1143, 1147
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	3 cut(s)	863, 1176, 1186
ScrFI	CCNGG	3 cut(s)	349, 498, 741
SfaNI	GCATC	3 cut(s)	526, 793, 1031
Sfr274I	CTCGAG	2 cut(s)	299, 899
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	2 cut(s)	299, 899
SmlI	CTYRAG	4 cut(s)	203, 299, 452, 899
SmoI	CTYRAG	4 cut(s)	203, 299, 452, 899
Sse9I	AATT	6 cut(s)	33, 406, 414, 697, 1004, 1066
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	6 cut(s)	260, 263, 294, 306, 381, 761
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	347, 496, 739
TaaI	ACNGT	2 cut(s)	475, 520
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	6 cut(s)	300, 857, 900, 1146, 1150, 1180
TasI	AATT	6 cut(s)	33, 406, 414, 697, 1004, 1066
TauI	GCSGC	3 cut(s)	265, 296, 764
TfiI	GAWTC	3 cut(s)	68, 791, 1010
Tru1I	TTAA	5 cut(s)	513, 582, 981, 993, 1098
Tru9I	TTAA	5 cut(s)	513, 582, 981, 993, 1098
TscAI	CASTG	2 cut(s)	637, 801
TseI	GCWGC	2 cut(s)	560, 749
TspDTI	ATGAA	3 cut(s)	17, 557, 749
TspRI	CASTG	2 cut(s)	637, 801
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	592
XhoI	CTCGAG	2 cut(s)	299, 899
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.