Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Forward (+)

2917386 .. 2919212

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGAATGATGTTGTGGGTTCTGTGTGTGATGCTAAGTTAAATGGTCTTGATGAGAAGTTAGATACTGGGAAGGGAGAGAGTTCTGATAAGAGGGCAGAGGTGAATAGTGGAGATGGTAGAGGGTTCAATGAGCATGAGAGTGTTATTGTTAAGCAAGATGATCAGGGACCGAGTTTGTGTGGGAAAAGAAGAGAATACCATGCACTCTGCATGTTTGATACAGTCCCGCTATCAGATGGGTTGTGTAACGCAGTAACGACCATTGTTGCTCCTATGAGCATTAAAGACAAAGGTGGAGGACTCGCTACTCATCGTGAAATTGTTGATGTTTCTCTCCTGTCAACTGTACTCTTGTCTTCTTCTATTCCTGTTCTCATGGAAACTGATGGAGGAGAGAGGAATTTAGTCATGACAGATGATAAGGAGTTTGAGATTCAAAGCACTGAAGGGCTGAATAGTGTGGTGTGGAAGAATAAGGCTCAATCACATTATTTCTTTCACACTAGCTTTGATAATGGATTATCTGTTGGCAACACACTTTTCGGTTCTGAGGCTCATACTTCCATGGATGTTGGCAATAGATTACTTAATGATAATTTTAGTGAAGAAAATGTTTATGCGGATGACAACTATGAGAAAATGCAAGTGAATTTTGAAAGGGTGCTGGAGTTAACATTGGAGAAGTGGAAATCAAGAGTTACTGCCAAAACACAATCTCAAGCAAAGTTAGTGCAATGGTTTATTCATTGCTTGCAGCTTTGTCATTGTACGACAAAAGATATTATACTCTTTTGCAAGGAAGCATTCGATGGAATTGGTGAAATGACTCAAACCTCATTGTCTCAGCGCTATGATCATAGTTCCTTGAACTATAAAGTTGGAGCAGAAATTTGGCCTCCTGATGATAGGGAATGGTTGGATTTGGATGGAGAAACGTATTGTCGAGCTGTTATAGAATTCTTTGATAACAAAAATGTGAAAGAGTTGGCAACTTTGATTTTGAAAGCTCAGAAGCTACAGTCTTCTACAATTGTGGTAGATAGATCAGGTTGTTGCGGTATTGTTAATGCTTGTGTTGGTATTGAATTATCAGATAAAGAACACAGCACTCTTGATGAAATGAATGCTCTGGGAGGTATTTTGGCCCTGGATGTTCATGTGCCAATATTGAATGCTCTTTGCAAAGAGCATAGAACTGCTGAAGCCACTCAACTGGTTATGGATTTTAGTAACTCGAAGCTTAAGTTGGACATGGTAACATATAATACTCTAATAGAAGCATCTATGTCTAGTCAAGATTTTCAATCGGCTTTTGATGGGGTATTGTGTGACATGATTAAGCTCTATGTCATGATTTATAGTGCTTTCAATGATAATGCTCAGAATTTGCTTCATGATGACACATTTGGGGTAATGGGATCTGTGGCGAGCTCTCTTGTTGATATGTATGTCCACTGTGGAACTTTGAAGAATGCATACAACATATATAATTGTGTTAGAAACAAAAGTCTAATATTTTGGACTACCATGATCAATGCGTATGGGATGCATGGTCATGGCAAGGGAGCCATTGACCTATTTGAGACGATGCATGACCAAAAGATTGTTCCTGATCATATTATGTTTTTGGCTCAAGTTTTTGACATTAAGGGTCAAATGGAAACTGATGATGGGCTTGCAAACAATTTGGAGAAGATATGTTTGCTTATTGCAATTGCAATTATTCAATTGCTAATAATTGCATTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

583

Amino Acids

64.84

Weight (kDa)

4.89

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	505 - 539	8.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	227, 620, 1056
AclWI	GGATC	1 cut(s)	1426
AcsI	RAATTY	5 cut(s)	400, 649, 888, 956, 1384
AcuI	CTGAAG	2 cut(s)	465, 1221
AfaI	GTAC	2 cut(s)	348, 769
AfeI	AGCGCT	1 cut(s)	848
AflII	CTTAAG	1 cut(s)	1241
AjnI	CCWGG	1 cut(s)	1146
AjuI	GAANNNNNNNTTGG	4 cut(s)	1229, 1261, 1590, 1622
AluBI	AGCT	8 cut(s)	507, 757, 947, 1007, 1015, 1240, 1342, 1431
AluI	AGCT	8 cut(s)	507, 757, 947, 1007, 1015, 1240, 1342, 1431
Alw21I	GWGCWC	1 cut(s)	1433
Alw26I	GTCTC	2 cut(s)	846, 1577
AlwI	GGATC	1 cut(s)	1426
Aor51HI	AGCGCT	1 cut(s)	848
AoxI	GGCC	2 cut(s)	893, 1143
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	5 cut(s)	400, 649, 888, 956, 1384
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	2 cut(s)	167, 1144
AsuHPI	GGTGA	2 cut(s)	112, 830
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	1433
BarI	GAAGNNNNNNTAC	2 cut(s)	1460, 1492
BbsI	GAAGAC	2 cut(s)	348, 1014
Bbv12I	GWGCWC	1 cut(s)	1433
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	7 cut(s)	107, 230, 380, 803, 920, 1310, 1664
BciT130I	CCWGG	1 cut(s)	1148
BclI	TGATCA	4 cut(s)	160, 853, 1530, 1612
BcoDI	GTCTC	2 cut(s)	846, 1577
BfaI	CTAG	2 cut(s)	504, 1290
BfmI	CTRYAG	1 cut(s)	1016
BfoI	RGCGCY	1 cut(s)	850
BfrI	CTTAAG	1 cut(s)	1241
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	1 cut(s)	1148
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 1144
BmiI	GGNNCC	2 cut(s)	168, 1567
BmrFI	CCNGG	1 cut(s)	1148
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	4 cut(s)	19, 1289, 1536, 1578
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	348, 1014
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	702, 1617
BsaJI	CCNNGG	2 cut(s)	564, 1146
Bse1I	ACTGG	2 cut(s)	70, 1218
Bse3DI	GCAATG	2 cut(s)	740, 745
BseBI	CCWGG	1 cut(s)	1148
BseDI	CCNNGG	2 cut(s)	564, 1146
BseGI	GGATG	5 cut(s)	574, 628, 931, 1156, 1551
BseMI	GCAATG	2 cut(s)	740, 745
BseMII	CTCAG	4 cut(s)	540, 857, 1022, 1394
BseNI	ACTGG	2 cut(s)	70, 1218
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	766
BshFI	GGCC	2 cut(s)	895, 1145
BsiHKAI	GWGCWC	1 cut(s)	1433
BslFI	GGGAC	2 cut(s)	180, 209
BsmAI	GTCTC	2 cut(s)	846, 1577
BsmBI	CGTCTC	1 cut(s)	1577
BsmFI	GGGAC	2 cut(s)	180, 209
BsmI	GAATGC	4 cut(s)	803, 1129, 1177, 1477
BsnI	GGCC	2 cut(s)	895, 1145
Bsp1286I	GDGCHC	1 cut(s)	1433
Bsp143I	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	3 cut(s)	227, 620, 1056
BspANI	GGCC	2 cut(s)	895, 1145
BspCNI	CTCAG	4 cut(s)	541, 856, 1021, 1393
BspHI	TCATGA	3 cut(s)	408, 1350, 1393
BspLI	GGNNCC	2 cut(s)	168, 1567
BspPI	GGATC	1 cut(s)	1426
BspTI	CTTAAG	1 cut(s)	1241
BsrDI	GCAATG	2 cut(s)	740, 745
BsrI	ACTGG	2 cut(s)	70, 1218
BssECI	CCNNGG	2 cut(s)	564, 1146
BssMI	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	1148
Bst4CI	ACNGT	4 cut(s)	223, 346, 1020, 1457
Bst6I	CTCTTC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	1241
BstC8I	GCNNGC	3 cut(s)	752, 1429, 1677
BstDEI	CTNAG	5 cut(s)	33, 549, 843, 1008, 1380
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	5 cut(s)	574, 628, 931, 1156, 1551
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	6 cut(s)	163, 856, 1046, 1421, 1533, 1615
BstMAI	GTCTC	2 cut(s)	846, 1577
BstMBI	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
BstNI	CCWGG	1 cut(s)	1148
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	1146
BstSFI	CTRYAG	1 cut(s)	1016
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	2 cut(s)	348, 1014
BstX2I	RGATCY	1 cut(s)	1418
BstXI	CCANNNNNNTGG	1 cut(s)	1213
BstYI	RGATCY	1 cut(s)	1418
BsuRI	GGCC	2 cut(s)	895, 1145
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	5 cut(s)	574, 628, 931, 1156, 1551
BtsIMutI	CAGTG	2 cut(s)	441, 1453
Cac8I	GCNNGC	3 cut(s)	752, 1429, 1677
CciI	TCATGA	3 cut(s)	408, 1350, 1393
CfoI	GCGC	1 cut(s)	849
Cfr13I	GGNCC	2 cut(s)	167, 1144
Csp6I	GTAC	2 cut(s)	347, 768
CviQI	GTAC	2 cut(s)	347, 768
DdeI	CTNAG	5 cut(s)	33, 549, 843, 1008, 1380
DpnI	GATC	6 cut(s)	162, 855, 1045, 1420, 1532, 1614
DpnII	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
DraI	TTTAAA	1 cut(s)	1747
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	1431
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	1433
Eco47I	GGWCC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	848
Eco53kI	GAGCTC	1 cut(s)	1431
Eco57I	CTGAAG	2 cut(s)	465, 1221
EcoICRI	GAGCTC	1 cut(s)	1431
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	1 cut(s)	1146
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	3 cut(s)	1477, 1551, 1593
EcoT38I	GRGCYC	1 cut(s)	1433
ErhI	CCWWGG	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	1577
FaqI	GGGAC	2 cut(s)	180, 209
FauI	CCCGC	1 cut(s)	234
FbaI	TGATCA	4 cut(s)	160, 853, 1530, 1612
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	5 cut(s)	581, 635, 938, 1163, 1558
FriOI	GRGCYC	1 cut(s)	1433
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	2 cut(s)	504, 1290
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	686
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	2 cut(s)	895, 1145
HhaI	GCGC	1 cut(s)	849
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HincII	GTYRAC	2 cut(s)	342, 672
HindII	GTYRAC	2 cut(s)	342, 672
HindIII	AAGCTT	1 cut(s)	1238
HinfI	GANTC	3 cut(s)	300, 433, 826
HpaI	GTTAAC	1 cut(s)	672
HphI	GGTGA	2 cut(s)	112, 830
Hpy166II	GTNNAC	3 cut(s)	342, 672, 1453
Hpy188I	TCNGA	6 cut(s)	85, 235, 550, 1011, 1093, 1383
Hpy8I	GTNNAC	3 cut(s)	342, 672, 1453
HpyAV	CCTTC	2 cut(s)	64, 440
HpyCH4III	ACNGT	4 cut(s)	223, 346, 1020, 1457
HpyCH4IV	ACGT	1 cut(s)	935
HpyF3I	CTNAG	5 cut(s)	33, 549, 843, 1008, 1380
HpySE526I	ACGT	1 cut(s)	935
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	4 cut(s)	160, 853, 1530, 1612
KspAI	GTTAAC	1 cut(s)	672
Kzo9I	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
LmnI	GCTCC	3 cut(s)	274, 881, 1565
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	4 cut(s)	19, 1289, 1536, 1578
MaeI	CTAG	2 cut(s)	504, 1290
MaeII	ACGT	1 cut(s)	935
MaeIII	GTNAC	6 cut(s)	245, 253, 697, 1229, 1255, 1328
MalI	GATC	6 cut(s)	162, 855, 1045, 1420, 1532, 1614
MboI	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
MboII	GAAGA	8 cut(s)	201, 348, 351, 481, 617, 1014, 1480, 1705
MfeI	CAATTG	3 cut(s)	1029, 1713, 1727
MflI	RGATCY	1 cut(s)	1418
MhlI	GDGCHC	1 cut(s)	1433
MlyI	GAGTC	2 cut(s)	294, 820
MmeI	TCCRAC	3 cut(s)	859, 897, 1227
Mph1103I	ATGCAT	3 cut(s)	1477, 1551, 1593
MslI	CAYNNNNRTG	3 cut(s)	138, 1554, 1747
MspCI	CTTAAG	1 cut(s)	1241
MspR9I	CCNGG	1 cut(s)	1148
MunI	CAATTG	3 cut(s)	1029, 1713, 1727
Mva1269I	GAATGC	4 cut(s)	803, 1129, 1177, 1477
MvaI	CCWGG	1 cut(s)	1148
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
NlaIV	GGNNCC	2 cut(s)	168, 1567
NmuCI	GTSAC	1 cut(s)	1328
NsiI	ATGCAT	3 cut(s)	1477, 1551, 1593
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	3 cut(s)	408, 1350, 1393
PctI	GAATGC	4 cut(s)	803, 1129, 1177, 1477
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	756
PleI	GAGTC	2 cut(s)	294, 820
PpsI	GAGTC	2 cut(s)	294, 820
Psp124BI	GAGCTC	1 cut(s)	1433
Psp6I	CCWGG	1 cut(s)	1146
PspGI	CCWGG	1 cut(s)	1146
PspN4I	GGNNCC	2 cut(s)	168, 1567
PspPI	GGNCC	2 cut(s)	167, 1144
PsuI	RGATCY	1 cut(s)	1418
RsaI	GTAC	2 cut(s)	348, 769
RsaNI	GTAC	2 cut(s)	347, 768
RseI	CAYNNNNRTG	3 cut(s)	138, 1554, 1747
SacI	GAGCTC	1 cut(s)	1433
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	6 cut(s)	160, 853, 1043, 1418, 1530, 1612
Sau96I	GGNCC	2 cut(s)	167, 1144
SchI	GAGTC	2 cut(s)	294, 820
ScrFI	CCNGG	1 cut(s)	1148
SduI	GDGCHC	1 cut(s)	1433
SfaNI	GCATC	4 cut(s)	19, 1289, 1536, 1578
SfcI	CTRYAG	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	167
SmiI	ATTTAAAT	1 cut(s)	1747
SmiMI	CAYNNNNRTG	3 cut(s)	138, 1554, 1747
SmlI	CTYRAG	3 cut(s)	717, 1241, 1632
SmoI	CTYRAG	3 cut(s)	717, 1241, 1632
SsiI	CCGC	3 cut(s)	227, 620, 1056
SspI	AATATT	2 cut(s)	1167, 1515
SspMI	CTAG	2 cut(s)	504, 1290
SstI	GAGCTC	1 cut(s)	1433
StyD4I	CCNGG	1 cut(s)	1146
StyI	CCWWGG	1 cut(s)	564
SwaI	ATTTAAAT	1 cut(s)	1747
TaaI	ACNGT	4 cut(s)	223, 346, 1020, 1457
TaiI	ACGT	1 cut(s)	938
TaqI	TCGA	3 cut(s)	807, 943, 1235
TaqII	GACCGA	1 cut(s)	184
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	433
TscAI	CASTG	2 cut(s)	448, 1460
TseFI	GTSAC	1 cut(s)	1328
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	1 cut(s)	1328
TspDTI	ATGAA	6 cut(s)	17, 734, 1131, 1136, 1145, 1382
TspRI	CASTG	2 cut(s)	448, 1460
Vha464I	CTTAAG	1 cut(s)	1241
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	5 cut(s)	400, 649, 888, 956, 1384
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	2 cut(s)	504, 1290
Zsp2I	ATGCAT	3 cut(s)	1477, 1551, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.