Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001893

Physical Location & Seq

Genomic Coordinates Reverse (-)

3664404 .. 3665118

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGGAGAAAACTAGAAGCTCTCACTCTCCTTCTCCTCCTTCCACACAGAAGAGGAAGAGCCTTCTCCTCAACATCTGAAATCCCAACCCTCTACTCCTTCCACCAACCTTCAATCTTTGCCTGCAAGAGGGCCCCACCTCCCTCCTCCCTCCAATCCCACAGCGACCTCCCAACCCCGCCGCCCGAAACCCTGACCCCCGACCATATCGCCGCCCTCGAGACCGCCCTCCACAAGTCCCTCATAACCCACAACACTGATGCGGCCTGGAAGTCCTTCAAGACCGTCACCGGCACCTCCGCCTTCCCCAGTAAGTCGCTCACCAATTCTCTGATTACCCATTTGTCCTCACTCGGGGACATTCACAATCTCAAGAGGGCTTTTGCCACCACTGTTTATGTTGTGGAAAAAACCCAGGTGTGCCAAACTGCTGCCCCTGCTTTTGCTTTTGTTAAATGCATGTTCAAGAACCGGTTTTTCTTGCCGTTTAGTGTGTTGGGCAATGTACTTGTTGAGATCAGCAGGGAAAATGGTAACTTTGTCGCGTTCTTACGGGTTTTTGAAGAGAATTGTAGGATTGCTTTGGATGAGAAGTTGGAGTTTATGAAACCGGTTTGGCTGCTTGTAATGCGGCGTTGGAGGGGTGTTGTCGTGAGCTTGAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

9.81

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	64 - 138	6.3e-32	At1g68980, TPR repeats
TPR_At1g68980	PF25245	140 - 203	7e-31	At1g68980, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68980 AT1G69290
fragaria_vesca	FvH4_4g15871 FvH4_4g30080 FvH4_5g31861
malus_domestica	MD13G1062900.v1.1 MD16G1061200.v1.1
prunus_persica	Prupe.1G286800_v2.0.a1
pyrus_communis	pycom13g05530 pycom16g05360
rosa_chinensis	RchiOBHm_Chr4g0438351 RchiOBHm_Chr5g0081041 RchiOBHm_Chr5g0081051
rosa_laevigata	RLG00000006368 RLG00000009184 RLG00000022150 RLG00000029496 RLG00000029523
rosa_multiflora	Rmu_co8205326.1_g000001 Rmu_co8209074.1_g000001 Rmu_co8210450.1_g000001 Rmu_sc0000029.1_g000033 Rmu_sc0000331.1_g000016 Rmu_sc0000718.1_g000024 Rmu_sc0002327.1_g000027 Rmu_sc0002541.1_g000004 Rmu_sc0006274.1_g000003 Rmu_sc0006274.1_g000004 Rmu_sc0007103.1_g000005 Rmu_sc0011176.1_g000001 Rmu_sc0012743.1_g000002 Rmu_sc0022931.1_g000002 Rmu_sc0025676.1_g000001 Rmu_sc0026128.1_g000001 Rmu_ssc0000432.1_g000117
rosa_roxburghii	Rroxscaffold_1G00002450 Rroxscaffold_2G00085350 Rroxscaffold_3G00249820
rosa_rugosa	Rorug04G0309200 Rorug06G0034900
rosa_samantha	Rh4AG360300 Rh4BG371200 Rh4CG385200 Rh4DG366100
rosa_wichuraiana	Rw0G006490 Rw0G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccII	CGCG	1 cut(s)	545
AciI	CCGC	7 cut(s)	179, 182, 213, 225, 263, 300, 631
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	129, 354
AgeI	ACCGGT	2 cut(s)	471, 610
AgsI	TTSAA	5 cut(s)	114, 280, 466, 563, 661
AjnI	CCWGG	2 cut(s)	266, 414
AluBI	AGCT	2 cut(s)	20, 657
AluI	AGCT	2 cut(s)	20, 657
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	218, 353
AoxI	GGCC	2 cut(s)	132, 264
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	431, 619
AsiGI	ACCGGT	2 cut(s)	471, 610
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	132, 133
AsuHPI	GGTGA	2 cut(s)	280, 313
AvaI	CYCGRG	2 cut(s)	218, 353
BaeGI	GKGCMC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	418, 606
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	268, 416
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	6 cut(s)	182, 213, 264, 432, 620, 632
BlsI	GCNGC	6 cut(s)	183, 214, 265, 433, 621, 633
Bme1390I	CCNGG	2 cut(s)	268, 416
BmeT110I	CYCGRG	2 cut(s)	218, 353
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	3 cut(s)	134, 135, 295
BmrFI	CCNGG	2 cut(s)	268, 416
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	2 cut(s)	471, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 354
Bse118I	RCCGGY	3 cut(s)	290, 471, 610
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	268, 416
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	129, 354
BseMI	GCAATG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	3 cut(s)	26, 58, 136
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	418, 606
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	134, 266
BshNI	GGYRCC	1 cut(s)	293
BshTI	ACCGGT	2 cut(s)	471, 610
BsiHKCI	CYCGRG	2 cut(s)	218, 353
BsiSI	CCGG	3 cut(s)	291, 472, 611
BslFI	GGGAC	2 cut(s)	223, 371
BslI	CCNNNNNNNGG	2 cut(s)	129, 354
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	223, 371
BsnI	GGCC	2 cut(s)	134, 266
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	2 cut(s)	218, 353
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	516
BspACI	CCGC	7 cut(s)	179, 182, 213, 225, 263, 300, 631
BspANI	GGCC	2 cut(s)	134, 266
BspFNI	CGCG	1 cut(s)	545
BspLI	GGNNCC	3 cut(s)	134, 135, 295
BspQI	GCTCTTC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	3 cut(s)	290, 471, 610
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	3 cut(s)	290, 471, 610
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	268, 416
Bst4CI	ACNGT	2 cut(s)	286, 394
Bst6I	CTCTTC	3 cut(s)	46, 52, 558
BstC8I	GCNNGC	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	545
BstKTI	GATC	1 cut(s)	519
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	516
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 628
BstNI	CCWGG	2 cut(s)	268, 416
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	266, 414
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	418, 606
BsuRI	GGCC	2 cut(s)	134, 266
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	255, 390
Cac8I	GCNNGC	1 cut(s)	124
Cfr10I	RCCGGY	3 cut(s)	290, 471, 610
Cfr13I	GGNCC	2 cut(s)	132, 133
Csp6I	GTAC	1 cut(s)	506
CspAI	ACCGGT	2 cut(s)	471, 610
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	7 cut(s)	20, 62, 134, 266, 380, 619, 657
CviKI_1	RGCY	7 cut(s)	20, 62, 134, 266, 380, 619, 657
CviQI	GTAC	1 cut(s)	506
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	46, 52, 558
EarI	CTCTTC	3 cut(s)	46, 52, 558
EciI	GGCGGA	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	215
Eco88I	CYCGRG	2 cut(s)	218, 353
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	132, 133
EcoRII	CCWGG	2 cut(s)	266, 414
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	463
FaiI	YATR	5 cut(s)	207, 245, 399, 461, 605
FaqI	GGGAC	2 cut(s)	223, 371
FatI	CATG	1 cut(s)	459
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	182, 213, 264, 432, 620, 632
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	6 cut(s)	182, 213, 264, 432, 620, 632
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	6 cut(s)	182, 213, 264, 432, 620, 632
HaeIII	GGCC	2 cut(s)	134, 266
HapII	CCGG	3 cut(s)	291, 472, 611
Hin1II	CATG	1 cut(s)	463
HinfI	GANTC	1 cut(s)	661
HpaII	CCGG	3 cut(s)	291, 472, 611
HphI	GGTGA	2 cut(s)	280, 313
Hpy188I	TCNGA	2 cut(s)	79, 333
Hpy188III	TCNNGA	5 cut(s)	220, 280, 373, 466, 652
HpyAV	CCTTC	7 cut(s)	41, 50, 73, 109, 120, 286, 313
HpyCH4III	ACNGT	2 cut(s)	286, 394
HpyCH4V	TGCA	2 cut(s)	126, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 628
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	516
LguI	GCTCTTC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	418, 606
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	286, 533
MalI	GATC	1 cut(s)	518
MboI	GATC	1 cut(s)	516
MboII	GAAGA	3 cut(s)	63, 69, 575
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	325, 568
MmeI	TCCRAC	2 cut(s)	576, 617
Mph1103I	ATGCAT	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	453
MspI	CCGG	3 cut(s)	291, 472, 611
MspR9I	CCNGG	2 cut(s)	268, 416
MvaI	CCWGG	2 cut(s)	268, 416
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	437, 628
NdeII	GATC	1 cut(s)	516
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	3 cut(s)	134, 135, 295
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	661
PinAI	ACCGGT	2 cut(s)	471, 610
PkrI	GCNGC	6 cut(s)	183, 214, 265, 433, 621, 633
Psp6I	CCWGG	2 cut(s)	266, 414
PspGI	CCWGG	2 cut(s)	266, 414
PspN4I	GGNNCC	3 cut(s)	134, 135, 295
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	6 cut(s)	182, 213, 264, 432, 620, 632
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	2 cut(s)	132, 133
ScrFI	CCNGG	2 cut(s)	268, 416
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	7 cut(s)	22, 112, 142, 171, 299, 420, 659
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	218, 371
SmoI	CTYRAG	2 cut(s)	218, 371
Sse9I	AATT	2 cut(s)	325, 568
SsiI	CCGC	7 cut(s)	179, 182, 213, 225, 263, 300, 631
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	266, 414
TaaI	ACNGT	2 cut(s)	286, 394
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	325, 568
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	4 cut(s)	184, 215, 266, 634
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	262, 397
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	431, 619
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	262, 397
XagI	CCTNNNNNAGG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.