AT1G70180

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001403
Physical Location & Seq
Forward (+)
26426269 .. 26429409
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70180.1

Sequence Viewer

Length: 1371 bp
ATGTCGGAAGGTTCGAGACGGAGTAGGGTTACTATAACTCTAGGTCGTAGCGGTCAGGTGGTGAATCGAGCTGCAAGTGATATAGATGATGGGTATGAGTTACCTAGAGTTGGGACTAAGCGGTCTGTCAAAGAGAGATTAGGGAATCCGTTAGATAGTTCTGTTTATGGTGGAGAAGAGGTGGTCAGTAAAAGGCAAAGAGGGGAAGCAAGTTTCAGTGGAAATGATTTGCAGATCAGTCGAAATGATCTCCGATTCAAACTGATGCAAAAGAATGCCCAGAGACGAGCTCAGAGCGATGAAGGCTGCACTATGGATCTTCGTGAAAAGCTCTCAAGGAGTGAGCAGCCTCCTCGTAGCCTTGATACAAGACCTCGTATGGCTGAGCCGAGGGATCGTCCTTTATCTTCATCAAGAACTGCTCGTGGTTCCTCTCAGATGATTTCATCAAGTAGTTCGCACCCTGCATGGGCTCTGGAAGATTTACGACGAAGGTCTCCAGAGAGATTTGTGGATACTTCCAGGGGTCGATCGCCGCCAAGAAATGCTGGAAGTTTCATTGGCATTCCAAGGGAACCTTCCCCTCCAAGAAATGGTAGAAGGATGATTGGCAGTGCAAGGGATAGATCACCTCCAAGAAGTGATGGAAGGATAATTGGCAGTCCAAGGGATATATCACCTCCAAGAGATGCTGGAAGGAGATTTGGCCCTCCAAGGGATCAGTCACCGCCAAGAAATGCTGGAAGGGTAACTGGCAGTCCAAGGGATAGATCACCTCCAAGAAATGCTGGAAGGAGAATGGGCCCTCCAAGGGATCAGTCACCGCCAAGGAGCACCAGAAGCTTCAGTAGTAATTCTAGGGCTCTGTCCCCAGCTAGAAATATGGGAAGCTACATGAGTTCTTCTCAGGGTTTTTCCCCTCCTAGGAATCCTAGAAGCTACATGGGTTCTTCCAGGGGTTCTCCCCCACGTAGTAACATTGAAGATTTTCATGGACGAAGCAGGATGCTTGATAATATGAGAGCATCGCCATATCCTGTTAGAGGTGTACTAAATGGTCAAGCGCCATCAAGTGGTGCTCCTTTCGCCAGGCCAATGTTACCTCCTCCAGTCCCAAACCCACATCCATTGCCTCCATTGAGCCAGCTTCCTCCACTTGGAAGTATTATGCAGAACAGTCCCTTCTCTGTGGACGAGCCTCTATCAGTTGATGGCTTTCTAAATTCAATTGGACTTGGAAAATACTCCCTTGCCTTTAAGAGAGAGGAAGTGGATATGACCACAATAAAGCAGATGAAAGAAAGTGATCTAAAAGATCTCATCATACCAATGGTACTTTCCTTTTGTTTCTTATCGATCGAAAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

456

Amino Acids

50.35

Weight (kDa)

11.34

Isoelectric Point (pI)

83.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 401 - 441 4.4e-08 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
AccB7I CCANNNNNTGG 2 cut(s) 593, 1073
AciI CCGC 5 cut(s) 51, 121, 536, 728, 824
AclWI GGATC 4 cut(s) 324, 402, 726, 822
AcsI RAATTY 1 cut(s) 1222
AcuI CTGAAG 1 cut(s) 829
AfaI GTAC 2 cut(s) 1050, 1335
AfiI CCNNNNNNNGG 9 cut(s) 110, 469, 593, 715, 811, 924, 1043, 1073, 1157
AgsI TTSAA 3 cut(s) 259, 983, 1227
AjnI CCWGG 3 cut(s) 521, 953, 1088
AjuI GAANNNNNNNTTGG 4 cut(s) 562, 594, 1321, 1353
AluBI AGCT 8 cut(s) 71, 290, 331, 843, 875, 891, 939, 1147
AluI AGCT 8 cut(s) 71, 290, 331, 843, 875, 891, 939, 1147
Alw21I GWGCWC 3 cut(s) 292, 836, 1081
Alw26I GTCTC 3 cut(s) 10, 277, 501
AlwI GGATC 4 cut(s) 324, 402, 726, 822
AoxI GGCC 3 cut(s) 706, 802, 1091
ApaI GGGCCC 1 cut(s) 806
ApeKI GCWGC 3 cut(s) 71, 306, 346
ApoI RAATTY 1 cut(s) 1222
Asp700I GAANNNNTTC 1 cut(s) 987
AspA2I CCTAGG 1 cut(s) 923
AspLEI GCGC 1 cut(s) 1066
AspS9I GGNCC 3 cut(s) 707, 802, 803
AsuHPI GGTGA 6 cut(s) 73, 621, 669, 717, 765, 813
AvrII CCTAGG 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 806
BanII GRGCYC 4 cut(s) 292, 475, 806, 865
BauI CACGAG 1 cut(s) 423
Bbv12I GWGCWC 3 cut(s) 292, 836, 1081
BbvI GCAGC 3 cut(s) 58, 293, 358
BccI CCATC 4 cut(s) 83, 638, 1075, 1205
BcgI CGANNNNNNTGC 4 cut(s) 221, 255, 335, 369
BciT130I CCWGG 3 cut(s) 523, 955, 1090
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 10, 277, 501
BfaI CTAG 6 cut(s) 41, 105, 858, 876, 924, 933
BfoI RGCGCY 1 cut(s) 1067
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 1315
BisI GCNGC 4 cut(s) 72, 307, 347, 536
BlnI CCTAGG 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 4 cut(s) 73, 308, 348, 537
Bme1390I CCNGG 3 cut(s) 523, 955, 1090
BmgT120I GGNCC 3 cut(s) 707, 802, 803
BmiI GGNNCC 3 cut(s) 430, 576, 804
BmrFI CCNGG 3 cut(s) 523, 955, 1090
BmsI GCATC 4 cut(s) 255, 679, 996, 1034
BoxI GACNNNNGTC 1 cut(s) 493
BplI GAGNNNNNCTC 4 cut(s) 274, 306, 889, 921
BpmI CTGGAG 2 cut(s) 483, 1092
Bpu1102I GCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 1355
BsaAI YACGTR 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 9 cut(s) 110, 469, 593, 715, 811, 924, 1043, 1073, 1157
Bse1I ACTGG 2 cut(s) 757, 1109
Bse3DI GCAATG 1 cut(s) 1127
BseBI CCWGG 3 cut(s) 523, 955, 1090
BseCI ATCGAT 1 cut(s) 1355
BseGI GGATG 3 cut(s) 609, 1011, 1123
BseLI CCNNNNNNNGG 9 cut(s) 110, 469, 593, 715, 811, 924, 1043, 1073, 1157
BseMI GCAATG 1 cut(s) 1127
BseMII CTCAG 4 cut(s) 305, 375, 449, 920
BseNI ACTGG 2 cut(s) 757, 1109
BseRI GAGGAG 2 cut(s) 342, 1095
BseSI GKGCMC 1 cut(s) 806
BseXI GCAGC 3 cut(s) 58, 293, 358
BseYI CCCAGC 1 cut(s) 871
BsgI GTGCAG 1 cut(s) 292
Bsh1285I CGRYCG 2 cut(s) 533, 1359
BshFI GGCC 3 cut(s) 708, 804, 1093
BshVI ATCGAT 1 cut(s) 1355
BsiEI CGRYCG 2 cut(s) 533, 1359
BsiHKAI GWGCWC 3 cut(s) 292, 836, 1081
BslFI GGGAC 4 cut(s) 127, 853, 1097, 1164
BslI CCNNNNNNNGG 9 cut(s) 110, 469, 593, 715, 811, 924, 1043, 1073, 1157
BsmAI GTCTC 3 cut(s) 10, 277, 501
BsmBI CGTCTC 2 cut(s) 10, 277
BsmFI GGGAC 4 cut(s) 127, 853, 1097, 1164
BsmI GAATGC 2 cut(s) 280, 564
BsnI GGCC 3 cut(s) 708, 804, 1093
Bso31I GGTCTC 1 cut(s) 501
Bsp120I GGGCCC 1 cut(s) 802
Bsp1286I GDGCHC 6 cut(s) 292, 475, 806, 836, 865, 1081
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 5 cut(s) 51, 121, 536, 728, 824
BspANI GGCC 3 cut(s) 708, 804, 1093
BspCNI CTCAG 4 cut(s) 304, 376, 448, 919
BspDI ATCGAT 1 cut(s) 1355
BspLI GGNNCC 3 cut(s) 430, 576, 804
BspPI GGATC 4 cut(s) 324, 402, 726, 822
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 1127
BsrI ACTGG 2 cut(s) 757, 1109
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 7 cut(s) 569, 665, 713, 761, 809, 827, 923
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 3 cut(s) 523, 955, 1090
Bst4CI ACNGT 1 cut(s) 1178
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 971
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 5 cut(s) 117, 291, 384, 435, 906
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 3 cut(s) 609, 1011, 1123
BstH2I RGCGCY 1 cut(s) 1067
BstHHI GCGC 1 cut(s) 1066
BstMAI GTCTC 3 cut(s) 10, 277, 501
BstMCI CGRYCG 2 cut(s) 533, 1359
BstMWI GCNNNNNNNGC 3 cut(s) 303, 840, 1085
BstNI CCWGG 3 cut(s) 523, 955, 1090
BstPAI GACNNNNGTC 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 521, 953, 1088
BstSLI GKGCMC 1 cut(s) 806
BstV1I GCAGC 3 cut(s) 58, 293, 358
BstX2I RGATCY 2 cut(s) 316, 1315
BstYI RGATCY 2 cut(s) 316, 1315
Bsu15I ATCGAT 1 cut(s) 1355
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 708, 804, 1093
BsuTUI ATCGAT 1 cut(s) 1355
BtgZI GCGATG 2 cut(s) 312, 1011
BtsCI GGATG 3 cut(s) 609, 1011, 1123
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 2 cut(s) 223, 619
Cac8I GCNNGC 1 cut(s) 1145
CfoI GCGC 1 cut(s) 1066
Cfr13I GGNCC 3 cut(s) 707, 802, 803
ClaI ATCGAT 1 cut(s) 1355
Csp6I GTAC 2 cut(s) 1049, 1334
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviAII CATG 4 cut(s) 468, 895, 943, 992
CviQI GTAC 2 cut(s) 1049, 1334
DdeI CTNAG 5 cut(s) 117, 291, 384, 435, 906
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 7 cut(s) 569, 665, 713, 761, 809, 827, 923
Eco24I GRGCYC 4 cut(s) 292, 475, 806, 865
Eco31I GGTCTC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoO109I RGGNCCY 1 cut(s) 803
EcoRII CCWGG 3 cut(s) 521, 953, 1088
EcoT14I CCWWGG 7 cut(s) 569, 665, 713, 761, 809, 827, 923
EcoT38I GRGCYC 4 cut(s) 292, 475, 806, 865
ErhI CCWWGG 7 cut(s) 569, 665, 713, 761, 809, 827, 923
Esp3I CGTCTC 2 cut(s) 10, 277
FaeI CATG 4 cut(s) 471, 898, 946, 995
FalI AAGNNNNNCTT 2 cut(s) 562, 594
FaqI GGGAC 4 cut(s) 127, 853, 1097, 1164
FatI CATG 4 cut(s) 467, 894, 942, 991
Fnu4HI GCNGC 4 cut(s) 72, 307, 347, 536
FokI GGATG 3 cut(s) 616, 1018, 1110
FriOI GRGCYC 4 cut(s) 292, 475, 806, 865
Fsp4HI GCNGC 4 cut(s) 72, 307, 347, 536
FspBI CTAG 6 cut(s) 41, 105, 858, 876, 924, 933
GlaI GCGC 1 cut(s) 1065
GluI GCNGC 4 cut(s) 72, 307, 347, 536
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 2 cut(s) 483, 1092
HaeII RGCGCY 1 cut(s) 1067
HaeIII GGCC 3 cut(s) 708, 804, 1093
HhaI GCGC 1 cut(s) 1066
Hin1II CATG 4 cut(s) 471, 898, 946, 995
Hin6I GCGC 1 cut(s) 1064
HinP1I GCGC 1 cut(s) 1064
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 4 cut(s) 64, 145, 255, 928
HphI GGTGA 6 cut(s) 73, 621, 669, 717, 765, 813
Hpy166II GTNNAC 2 cut(s) 1049, 1192
Hpy188I TCNGA 4 cut(s) 7, 254, 294, 438
Hpy188III TCNNGA 5 cut(s) 15, 323, 414, 476, 500
Hpy8I GTNNAC 2 cut(s) 1049, 1192
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 9 cut(s) 296, 486, 588, 594, 642, 690, 738, 786, 1192
HpyCH4III ACNGT 1 cut(s) 1178
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 7 cut(s) 74, 232, 268, 309, 467, 617, 1171
HpyF10VI GCNNNNNNNGC 3 cut(s) 303, 840, 1085
HpyF3I CTNAG 5 cut(s) 117, 291, 384, 435, 906
HpySE526I ACGT 1 cut(s) 970
Hsp92II CATG 4 cut(s) 471, 898, 946, 995
HspAI GCGC 1 cut(s) 1064
LmnI GCTCC 2 cut(s) 831, 1084
Lsp1109I GCAGC 3 cut(s) 58, 293, 358
LweI GCATC 4 cut(s) 255, 679, 996, 1034
MaeI CTAG 6 cut(s) 41, 105, 858, 876, 924, 933
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 7 cut(s) 28, 99, 723, 748, 819, 974, 1098
MboII GAAGA 7 cut(s) 188, 311, 399, 491, 894, 942, 995
MfeI CAATTG 2 cut(s) 1227, 1366
MflI RGATCY 2 cut(s) 316, 1315
MhlI GDGCHC 6 cut(s) 292, 475, 806, 836, 865, 1081
MluCI AATT 5 cut(s) 654, 853, 1222, 1227, 1366
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 1 cut(s) 1257
MslI CAYNNNNRTG 1 cut(s) 1328
MspR9I CCNGG 3 cut(s) 523, 955, 1090
MunI CAATTG 2 cut(s) 1227, 1366
Mva1269I GAATGC 2 cut(s) 280, 564
MvaI CCWGG 3 cut(s) 523, 955, 1090
MwoI GCNNNNNNNGC 3 cut(s) 303, 840, 1085
NlaIII CATG 4 cut(s) 471, 898, 946, 995
NlaIV GGNNCC 3 cut(s) 430, 576, 804
NmeAIII GCCGAG 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 723, 819
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 280, 564
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 4 cut(s) 64, 145, 255, 928
PflMI CCANNNNNTGG 2 cut(s) 593, 1073
PkrI GCNGC 4 cut(s) 73, 308, 348, 537
Ple19I CGATCG 2 cut(s) 533, 1359
Ppu21I YACGTR 1 cut(s) 971
PshAI GACNNNNGTC 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 3 cut(s) 521, 953, 1088
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 3 cut(s) 521, 953, 1088
PspN4I GGNNCC 3 cut(s) 430, 576, 804
PspOMI GGGCCC 1 cut(s) 802
PspPI GGNCC 3 cut(s) 707, 802, 803
PsuI RGATCY 2 cut(s) 316, 1315
PvuI CGATCG 2 cut(s) 533, 1359
RsaI GTAC 2 cut(s) 1050, 1335
RsaNI GTAC 2 cut(s) 1049, 1334
RseI CAYNNNNRTG 1 cut(s) 1328
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 1257
SatI GCNGC 4 cut(s) 72, 307, 347, 536
Sau96I GGNCC 3 cut(s) 707, 802, 803
ScrFI CCNGG 3 cut(s) 523, 955, 1090
SduI GDGCHC 6 cut(s) 292, 475, 806, 836, 865, 1081
SfaNI GCATC 4 cut(s) 255, 679, 996, 1034
SmiMI CAYNNNNRTG 1 cut(s) 1328
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 5 cut(s) 654, 853, 1222, 1227, 1366
SsiI CCGC 5 cut(s) 51, 121, 536, 728, 824
SspMI CTAG 6 cut(s) 41, 105, 858, 876, 924, 933
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 521, 953, 1088
StyI CCWWGG 7 cut(s) 569, 665, 713, 761, 809, 827, 923
TaaI ACNGT 1 cut(s) 1178
TaiI ACGT 1 cut(s) 973
TaqI TCGA 6 cut(s) 14, 67, 241, 529, 1355, 1359
TasI AATT 5 cut(s) 654, 853, 1222, 1227, 1366
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 4 cut(s) 64, 145, 255, 928
Tru1I TTAA 1 cut(s) 1257
Tru9I TTAA 1 cut(s) 1257
TscAI CASTG 2 cut(s) 223, 619
TseFI GTSAC 2 cut(s) 723, 819
TseI GCWGC 3 cut(s) 71, 306, 346
Tsp45I GTSAC 2 cut(s) 723, 819
TspDTI ATGAA 6 cut(s) 315, 399, 435, 547, 980, 1310
TspGWI ACGGA 2 cut(s) 34, 138
TspRI CASTG 2 cut(s) 223, 619
Van91I CCANNNNNTGG 2 cut(s) 593, 1073
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 1 cut(s) 1222
XmaJI CCTAGG 1 cut(s) 923
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 6 cut(s) 41, 105, 858, 876, 924, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.