Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2942216 .. 2945057

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1040400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCGAATTCGAGGGTTACCATCACCCTCGGTCGCTCTGGCCAGGTTGTGGAGAGAGGAGGATTTGTATCCAACTCTGCGAAAATGCGTGGTGATAGTGGGATGGTTTCTGGAAGTAAACGAATGGCAGACAGACTTGGGAGTAATGCTCATGGTTTTTCGTTTTCTTCGGGCAAGCGGCAACGAGGAGATGGCATAAAATGGAATGAGGGTGATAGAACACTGCAAGATTCACGAATCAGTCGAAATGACCTCAGATTGAAATTGTTGCGTAAAAGATTATTTAAGAAGCAAATTGGCGGAGTTGTTGAAGAGCACAAGCAGTTGGACCCTCGTGCAAAGCTTTCAAAACCTGTTCATCCTTCACTGAAATACCAGGTGTTGCAGCATAATTCAGAAACAAATGGAAGTAACCCCATGAGGCAGGTTCCTCCCAGAGAAAGTCCAGCTGATCTAAACCAGGTAAATTCTCGAAGAAACTTCTACTCTTCTCCAACTACAGATGGATTCAGAGGTAGATCCCCACCAAGAGAGCTGCACCCACCATCTTCATTTAGGCCAGTTGACGCTTCTAGAGCTGGCCAATTCCCGAGAAATGGTATGGTTGGTTCTTCTGACTCCTTTATTTTCACAATGAAAGCTAACCCTCAAGCTGCCAGGCCAATGGCACAGTTTGCACCACCAAGTGCCAGTGTGCAGAGAAGTTCACAAATGGTGGATGAAACTCTAACTGTTGCTGGCTTGTTGCACAGCCTTGGTTTGGGAAAATATGCCATTATTTTCCAGGCTGAAGAAGTGGACATGACTGCTTTGAAGCAGATGGGAGATAAGGATCTCAAAGAGCTGGGCATACCGATGGGACCAAGAAAAAAGATCCTTCTTGCACTCTTGCCCCGTACCAAACGGCCACCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

306

Amino Acids

33.66

Weight (kDa)

10.94

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	244 - 296	4.7e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	245 - 295	1.8e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	2 cut(s)	178, 300
AclWI	GGATC	3 cut(s)	513, 840, 868
AcoI	YGGCCR	3 cut(s)	40, 580, 905
AcsI	RAATTY	2 cut(s)	7, 466
AcuI	CTGAAG	1 cut(s)	810
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	3 cut(s)	49, 596, 760
AgsI	TTSAA	4 cut(s)	262, 311, 348, 814
AjnI	CCWGG	5 cut(s)	42, 375, 459, 656, 783
AluBI	AGCT	7 cut(s)	343, 449, 535, 578, 641, 653, 844
AluI	AGCT	7 cut(s)	343, 449, 535, 578, 641, 653, 844
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	513, 840, 868
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	5 cut(s)	40, 557, 580, 659, 905
ApeKI	GCWGC	3 cut(s)	385, 535, 653
ApoI	RAATTY	2 cut(s)	7, 466
AspS9I	GGNCC	2 cut(s)	328, 860
AsuHPI	GGTGA	3 cut(s)	16, 104, 224
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	2 cut(s)	328, 860
BalI	TGGCCA	2 cut(s)	42, 582
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	397, 522, 640
BccI	CCATC	7 cut(s)	29, 97, 185, 497, 553, 814, 850
BciT130I	CCWGG	5 cut(s)	44, 377, 461, 658, 785
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	4 cut(s)	179, 386, 536, 654
BlsI	GCNGC	4 cut(s)	180, 387, 537, 655
Bme1390I	CCNGG	5 cut(s)	44, 377, 461, 658, 785
Bme18I	GGWCC	2 cut(s)	328, 860
BmeT110I	CYCGRG	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	328, 860
BmiI	GGNNCC	3 cut(s)	330, 429, 861
BmrFI	CCNGG	5 cut(s)	44, 377, 461, 658, 785
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpuEI	CTTGAG	1 cut(s)	633
BsaBI	GATNNNNATC	2 cut(s)	67, 831
BsaJI	CCNNGG	2 cut(s)	28, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 596, 760
Bse1I	ACTGG	2 cut(s)	560, 690
Bse8I	GATNNNNATC	2 cut(s)	67, 831
BseBI	CCWGG	5 cut(s)	44, 377, 461, 658, 785
BseDI	CCNNGG	2 cut(s)	28, 754
BseGI	GGATG	3 cut(s)	108, 358, 724
BseJI	GATNNNNATC	2 cut(s)	67, 831
BseLI	CCNNNNNNNGG	3 cut(s)	49, 596, 760
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	2 cut(s)	560, 690
BseRI	GAGGAG	2 cut(s)	72, 201
BseXI	GCAGC	3 cut(s)	397, 522, 640
BseYI	CCCAGC	1 cut(s)	844
BsgI	GTGCAG	2 cut(s)	521, 716
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	42, 559, 582, 661, 907
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	3 cut(s)	49, 596, 760
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	5 cut(s)	42, 559, 582, 661, 907
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	451, 518, 832, 873
BspACI	CCGC	2 cut(s)	178, 300
BspANI	GGCC	5 cut(s)	42, 559, 582, 661, 907
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	330, 429, 861
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	513, 840, 868
BspQI	GCTCTTC	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	560, 690
BssECI	CCNNGG	2 cut(s)	28, 754
BssMI	GATC	4 cut(s)	451, 518, 832, 873
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	754
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	5 cut(s)	44, 377, 461, 658, 785
Bst4CI	ACNGT	2 cut(s)	672, 733
Bst6I	CTCTTC	2 cut(s)	306, 493
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	176, 580, 739
BstDEI	CTNAG	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	108, 358, 724
BstKTI	GATC	4 cut(s)	454, 521, 835, 876
BstMBI	GATC	4 cut(s)	451, 518, 832, 873
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 674
BstNI	CCWGG	5 cut(s)	44, 377, 461, 658, 785
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	42, 375, 459, 656, 783
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	397, 522, 640
BstX2I	RGATCY	3 cut(s)	518, 832, 873
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	3 cut(s)	518, 832, 873
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	5 cut(s)	42, 559, 582, 661, 907
BtsCI	GGATG	3 cut(s)	108, 358, 724
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	3 cut(s)	221, 365, 697
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	176, 580, 739
Cfr13I	GGNCC	2 cut(s)	328, 860
CseI	GACGC	1 cut(s)	575
CsiI	ACCWGGT	2 cut(s)	375, 459
Csp6I	GTAC	1 cut(s)	897
CviAII	CATG	3 cut(s)	152, 418, 802
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	453, 520, 834, 875
DpnII	GATC	4 cut(s)	451, 518, 832, 873
DraIII	CACNNNGTG	1 cut(s)	686
EaeI	YGGCCR	3 cut(s)	40, 580, 905
Eam1104I	CTCTTC	2 cut(s)	306, 493
EarI	CTCTTC	2 cut(s)	306, 493
EciI	GGCGGA	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	328, 860
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	589
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	5 cut(s)	42, 375, 459, 656, 783
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	3 cut(s)	155, 421, 805
FaiI	YATR	9 cut(s)	153, 197, 390, 419, 602, 771, 803, 851, 916
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	3 cut(s)	151, 417, 801
Fnu4HI	GCNGC	4 cut(s)	179, 386, 536, 654
FokI	GGATG	3 cut(s)	115, 345, 731
Fsp4HI	GCNGC	4 cut(s)	179, 386, 536, 654
FspBI	CTAG	1 cut(s)	573
GluI	GCNGC	4 cut(s)	179, 386, 536, 654
GsaI	CCCAGC	1 cut(s)	848
HaeIII	GGCC	5 cut(s)	42, 559, 582, 661, 907
HgaI	GACGC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	155, 421, 805
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	4 cut(s)	230, 237, 507, 617
HphI	GGTGA	3 cut(s)	16, 104, 224
Hpy166II	GTNNAC	4 cut(s)	119, 565, 707, 799
Hpy188I	TCNGA	4 cut(s)	257, 397, 512, 616
Hpy188III	TCNNGA	5 cut(s)	111, 234, 471, 573, 589
Hpy8I	GTNNAC	4 cut(s)	119, 565, 707, 799
HpyAV	CCTTC	2 cut(s)	372, 887
HpyCH4III	ACNGT	2 cut(s)	672, 733
HpyCH4V	TGCA	8 cut(s)	226, 338, 385, 538, 677, 697, 748, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 674
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	155, 421, 805
Kzo9I	GATC	4 cut(s)	451, 518, 832, 873
LguI	GCTCTTC	1 cut(s)	306
Lsp1109I	GCAGC	3 cut(s)	397, 522, 640
MabI	ACCWGGT	2 cut(s)	375, 459
MaeI	CTAG	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	16, 410
MalI	GATC	4 cut(s)	453, 520, 834, 875
MboI	GATC	4 cut(s)	451, 518, 832, 873
MboII	GAAGA	7 cut(s)	159, 323, 480, 486, 540, 603, 803
MflI	RGATCY	3 cut(s)	518, 832, 873
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	2 cut(s)	42, 582
MluCI	AATT	6 cut(s)	7, 263, 294, 391, 466, 584
MluNI	TGGCCA	2 cut(s)	42, 582
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	3 cut(s)	96, 306, 518
Mox20I	TGGCCA	2 cut(s)	42, 582
MscI	TGGCCA	2 cut(s)	42, 582
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	854
Msp20I	TGGCCA	2 cut(s)	42, 582
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	5 cut(s)	44, 377, 461, 658, 785
MvaI	CCWGG	5 cut(s)	44, 377, 461, 658, 785
MwoI	GCNNNNNNNGC	2 cut(s)	575, 674
NdeII	GATC	4 cut(s)	451, 518, 832, 873
NlaIII	CATG	3 cut(s)	155, 421, 805
NlaIV	GGNNCC	3 cut(s)	330, 429, 861
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	230, 237, 507
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	180, 387, 537, 655
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp6I	CCWGG	5 cut(s)	42, 375, 459, 656, 783
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	844
PspGI	CCWGG	5 cut(s)	42, 375, 459, 656, 783
PspN4I	GGNNCC	3 cut(s)	330, 429, 861
PspPI	GGNCC	2 cut(s)	328, 860
PsrI	GAACNNNNNNTAC	2 cut(s)	592, 624
PsuI	RGATCY	3 cut(s)	518, 832, 873
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
RseI	CAYNNNNRTG	1 cut(s)	854
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	179, 386, 536, 654
Sau3AI	GATC	4 cut(s)	451, 518, 832, 873
Sau96I	GGNCC	2 cut(s)	328, 860
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	5 cut(s)	44, 377, 461, 658, 785
SduI	GDGCHC	1 cut(s)	318
SexAI	ACCWGGT	2 cut(s)	375, 459
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	328, 860
SmiMI	CAYNNNNRTG	1 cut(s)	854
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	6 cut(s)	7, 263, 294, 391, 466, 584
SsiI	CCGC	2 cut(s)	178, 300
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	5 cut(s)	42, 375, 459, 656, 783
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	672, 733
TaqI	TCGA	4 cut(s)	5, 11, 244, 472
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	6 cut(s)	7, 263, 294, 391, 466, 584
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	230, 237, 507
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	228, 372, 697
TseI	GCWGC	3 cut(s)	385, 535, 653
TspDTI	ATGAA	4 cut(s)	347, 540, 650, 735
TspRI	CASTG	3 cut(s)	228, 372, 697
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	328, 860
XapI	RAATTY	2 cut(s)	7, 466
XbaI	TCTAGA	1 cut(s)	572
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.