Rh2BG630600

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001403
Physical Location & Seq
Forward (+)
85330973 .. 85334986
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG630600.1

Sequence Viewer

Length: 789 bp
ATGTCGAAGCCCAGGGTCACCATCACCCTCGGTCGCTCTGGTCAGGTTGTGGAGAGGGGAGGGACATCAGACTCTGTAAATATGCGTGGCGTAAGAGGTATGGTTTCGGGAGGTAAACGATCAATGGGAGACAGGCTTGGGAGTAATGCTCATGGAAAGCGGCAACGAGGAGATGGAATAAAATGGAGAGGGGGTGACAATACATTACATGATTCACGAATCAGTCGAAATGACCTCAGATTGAAACTGTTGCGCAAAAGATCATTTAAGCAAAATGGGGGAGTTGTTGCAGAACGCAAGCAGATGGTCCCGCGCCCAAAGCTGTCAAAACCTGCTCATTCTGCAGTGAGGTATCAGATGCCACAGCACAAGTCAGAAACAAATGAGAGTAGCTTCCTGAGGCAAATTCCTCCCAGGGAAACTGCAGCTGATTTGTATCATGTAAATTCACAGAGGAACTACAACTCTTCTCAAAGTAGAGAAGGATTCCGAGCTAGATCCCCCGATAACTTTGTGAACACTTCTTATGGGCCATCACCTCAAAGAAACTTTGGTGAGCTGCAGTCAGCATCATCCTTCAGGGCAGCTGACGCTCCTAGAGCTGGCCAGTTCCTGAGAAATGGTATGGTTGGTTCGTCTCAGCCAACAGATTCCTTCCTTTTCAGAACAAAATCTAACCCTCAAACTGCCAAGCCAGTTGGACAGCTTGTGCCAACAAATTACAGCATGCAAAAAGTCCCTTATATGGTACTACTTTCTGGCTGTTGCACCACTTTAGCTTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

262

Amino Acids

29.01

Weight (kDa)

11.22

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 340
AccII CGCG 1 cut(s) 313
AciI CCGC 2 cut(s) 160, 311
AclWI GGATC 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 2 cut(s) 405, 445
AcuI CTGAAG 1 cut(s) 562
AfaI GTAC 1 cut(s) 750
AfiI CCNNNNNNNGG 2 cut(s) 602, 745
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 2 cut(s) 11, 413
AluBI AGCT 9 cut(s) 322, 393, 428, 494, 559, 587, 602, 706, 779
AluI AGCT 9 cut(s) 322, 393, 428, 494, 559, 587, 602, 706, 779
Alw26I GTCTC 2 cut(s) 123, 642
AlwI GGATC 1 cut(s) 492
AlwNI CAGNNNCTG 2 cut(s) 74, 613
AoxI GGCC 2 cut(s) 530, 604
ApeKI GCWGC 3 cut(s) 425, 559, 584
ApoI RAATTY 2 cut(s) 405, 445
AspLEI GCGC 2 cut(s) 255, 315
AspS9I GGNCC 2 cut(s) 307, 530
AsuHPI GGTGA 5 cut(s) 10, 16, 206, 528, 566
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 398
BalI TGGCCA 1 cut(s) 606
BbvI GCAGC 3 cut(s) 437, 546, 596
BccI CCATC 4 cut(s) 29, 167, 298, 541
BciT130I CCWGG 2 cut(s) 13, 415
BcoDI GTCTC 2 cut(s) 123, 642
BfaI CTAG 2 cut(s) 495, 597
BfmI CTRYAG 3 cut(s) 342, 423, 560
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 4 cut(s) 161, 426, 560, 585
BlsI GCNGC 4 cut(s) 162, 427, 561, 586
Bme1390I CCNGG 2 cut(s) 13, 415
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 2 cut(s) 307, 530
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 13, 415
BmsI GCATC 2 cut(s) 348, 578
BplI GAGNNNNNCTC 2 cut(s) 133, 165
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 11, 12, 28, 413, 414
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 745
Bse1I ACTGG 2 cut(s) 607, 695
Bse21I CCTNAGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 2 cut(s) 13, 415
BseDI CCNNGG 5 cut(s) 11, 12, 28, 413, 414
BseGI GGATG 1 cut(s) 572
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 602, 745
BseMII CTCAG 4 cut(s) 250, 389, 605, 653
BseNI ACTGG 2 cut(s) 607, 695
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 437, 546, 596
Bsh1236I CGCG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 532, 606
BsiEI CGRYCG 1 cut(s) 34
BslFI GGGAC 3 cut(s) 76, 293, 722
BslI CCNNNNNNNGG 2 cut(s) 602, 745
BsmAI GTCTC 2 cut(s) 123, 642
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 3 cut(s) 76, 293, 722
BsnI GGCC 2 cut(s) 532, 606
Bsp143I GATC 3 cut(s) 119, 260, 497
BspACI CCGC 2 cut(s) 160, 311
BspANI GGCC 2 cut(s) 532, 606
BspCNI CTCAG 4 cut(s) 249, 390, 606, 652
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 309
BspMAI CTGCAG 3 cut(s) 346, 427, 564
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 492
BsrI ACTGG 2 cut(s) 607, 695
BssECI CCNNGG 5 cut(s) 11, 12, 28, 413, 414
BssMI GATC 3 cut(s) 119, 260, 497
Bst2UI CCWGG 2 cut(s) 13, 415
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 299, 604, 728
BstDEI CTNAG 4 cut(s) 236, 398, 614, 639
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 572
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 2 cut(s) 255, 315
BstKTI GATC 3 cut(s) 122, 263, 500
BstMAI GTCTC 2 cut(s) 123, 642
BstMBI GATC 3 cut(s) 119, 260, 497
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 319, 341, 590, 599
BstNI CCWGG 2 cut(s) 13, 415
BstNSI RCATGY 1 cut(s) 730
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 11, 413
BstSFI CTRYAG 3 cut(s) 342, 423, 560
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 3 cut(s) 437, 546, 596
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu36I CCTNAGG 1 cut(s) 398
BsuRI GGCC 2 cut(s) 532, 606
BtsCI GGATG 1 cut(s) 572
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 299, 604, 728
CaiI CAGNNNCTG 2 cut(s) 74, 613
CfoI GCGC 2 cut(s) 255, 315
Cfr13I GGNCC 2 cut(s) 307, 530
CseI GACGC 1 cut(s) 599
Csp6I GTAC 1 cut(s) 749
CviAII CATG 4 cut(s) 152, 209, 440, 727
CviQI GTAC 1 cut(s) 749
DdeI CTNAG 4 cut(s) 236, 398, 614, 639
DpnI GATC 3 cut(s) 121, 262, 499
DpnII GATC 3 cut(s) 119, 260, 497
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 562
Eco81I CCTNAGG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 11, 413
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 4 cut(s) 155, 212, 443, 730
FaqI GGGAC 3 cut(s) 76, 293, 722
FatI CATG 4 cut(s) 151, 208, 439, 726
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 161, 426, 560, 585
FokI GGATG 1 cut(s) 559
Fsp4HI GCNGC 4 cut(s) 161, 426, 560, 585
FspBI CTAG 2 cut(s) 495, 597
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 2 cut(s) 254, 314
GluI GCNGC 4 cut(s) 161, 426, 560, 585
HaeIII GGCC 2 cut(s) 532, 606
HgaI GACGC 1 cut(s) 599
HhaI GCGC 2 cut(s) 255, 315
Hin1II CATG 4 cut(s) 155, 212, 443, 730
Hin6I GCGC 2 cut(s) 253, 313
HinP1I GCGC 2 cut(s) 253, 313
HinfI GANTC 5 cut(s) 71, 212, 219, 486, 650
HphI GGTGA 5 cut(s) 10, 16, 206, 528, 566
Hpy166II GTNNAC 2 cut(s) 116, 517
Hpy188I TCNGA 6 cut(s) 70, 239, 357, 376, 491, 665
Hpy188III TCNNGA 4 cut(s) 108, 216, 397, 613
Hpy8I GTNNAC 2 cut(s) 116, 517
HpyAV CCTTC 3 cut(s) 476, 586, 664
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 6 cut(s) 290, 344, 425, 562, 730, 768
HpyF10VI GCNNNNNNNGC 4 cut(s) 319, 341, 590, 599
HpyF3I CTNAG 4 cut(s) 236, 398, 614, 639
Hsp92II CATG 4 cut(s) 155, 212, 443, 730
HspAI GCGC 2 cut(s) 253, 313
Kzo9I GATC 3 cut(s) 119, 260, 497
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 3 cut(s) 437, 546, 596
LweI GCATC 2 cut(s) 348, 578
MaeI CTAG 2 cut(s) 495, 597
MaeIII GTNAC 2 cut(s) 16, 194
MalI GATC 3 cut(s) 121, 262, 499
MboI GATC 3 cut(s) 119, 260, 497
MboII GAAGA 1 cut(s) 459
MflI RGATCY 1 cut(s) 497
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 3 cut(s) 405, 445, 718
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 679
Mox20I TGGCCA 1 cut(s) 606
MscI TGGCCA 1 cut(s) 606
MseI TTAA 2 cut(s) 267, 787
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 428, 587
MspR9I CCNGG 2 cut(s) 13, 415
MvaI CCWGG 2 cut(s) 13, 415
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 4 cut(s) 319, 341, 590, 599
NdeII GATC 3 cut(s) 119, 260, 497
NlaIII CATG 4 cut(s) 155, 212, 443, 730
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 16, 194
NsbI TGCGCA 1 cut(s) 254
NspI RCATGY 1 cut(s) 730
PaeI GCATGC 1 cut(s) 730
PasI CCCWGGG 2 cut(s) 12, 414
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PfeI GAWTC 4 cut(s) 212, 219, 486, 650
PkrI GCNGC 4 cut(s) 162, 427, 561, 586
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 11, 413
PspEI GGTNACC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 11, 413
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 307, 530
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
PstI CTGCAG 3 cut(s) 346, 427, 564
PstNI CAGNNNCTG 2 cut(s) 74, 613
PsuI RGATCY 1 cut(s) 497
PvuII CAGCTG 2 cut(s) 428, 587
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
SaqAI TTAA 2 cut(s) 267, 787
SatI GCNGC 4 cut(s) 161, 426, 560, 585
Sau3AI GATC 3 cut(s) 119, 260, 497
Sau96I GGNCC 2 cut(s) 307, 530
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 13, 415
SfaNI GCATC 2 cut(s) 348, 578
SfcI CTRYAG 3 cut(s) 342, 423, 560
SinI GGWCC 1 cut(s) 307
SphI GCATGC 1 cut(s) 730
Sse9I AATT 3 cut(s) 405, 445, 718
SsiI CCGC 2 cut(s) 160, 311
SspMI CTAG 2 cut(s) 495, 597
StyD4I CCNGG 2 cut(s) 11, 413
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 5, 226
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 405, 445, 718
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 4 cut(s) 212, 219, 486, 650
Tru1I TTAA 2 cut(s) 267, 787
Tru9I TTAA 2 cut(s) 267, 787
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 2 cut(s) 16, 194
TseI GCWGC 3 cut(s) 425, 559, 584
Tsp45I GTSAC 2 cut(s) 16, 194
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 2 cut(s) 405, 445
XceI RCATGY 1 cut(s) 730
XspI CTAG 2 cut(s) 495, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.