Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

12552013 .. 12554646

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGCTTTGGCCACTTTTTCTTGTGGCGGTGGGGTTGGCGATGAAGAGGAGGTGGGGCTAGCGATGAGAGGCGGCGGCGACTCCGGATCCCAAAGATTAGGCATGGTGCCCTGGCCACCAGTGTGGCGTTCCTTTCAAAGATGTGGTTGTCAGCGCAGCATCATCGATTGTGGACTTGCAGGAGCAATGGTGGAGGGCGGCGACTTCCGAATGATGGGTGATGAACAACAGACAGTAGATGGCTTGCTGCAACACCGTGGATTGGGAAAATATGCCATTATATTCAAGGCTGAGGAAATTGATATGACTGCATTGAAGCTAAGGGAGAAAATGACCTCAAAGAGCTGGGAATACCTATGGTATTTACATTTTTCTTTCCTTTCTTTTTCTGTTCTTCTGTTAGTTTGCTCACATATGTTTGAGGTGGAGGGGGTGAATGGTTTGGTTTCAGAACTTGCTGTTGTAGCAGCGCAGAAGAAAGCCATGCTTGACAAATGTGAAGCATTGCTGGCTTCAGCAGCAGCTATGAATTGTTTTAATTTTTGTTTGGTCCTTTGCTTACTAGAATTTAGGGACAGGGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

196

Amino Acids

21.54

Weight (kDa)

5.25

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	4 cut(s)	30, 75, 78, 201
AclWI	GGATC	2 cut(s)	84, 97
AcoI	YGGCCR	2 cut(s)	12, 116
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	217, 265
AgsI	TTSAA	3 cut(s)	140, 289, 319
AjnI	CCWGG	1 cut(s)	113
AleI	CACNNNNGTG	1 cut(s)	124
AluBI	AGCT	3 cut(s)	322, 348, 527
AluI	AGCT	3 cut(s)	322, 348, 527
AlwI	GGATC	2 cut(s)	84, 97
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	2 cut(s)	12, 116
ApeKI	GCWGC	5 cut(s)	159, 250, 470, 521, 524
ApoI	RAATTY	1 cut(s)	569
AspLEI	GCGC	2 cut(s)	159, 475
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	233, 448
AsuNHI	GCTAGC	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	553
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	2 cut(s)	14, 118
BamHI	GGATCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	171, 237, 482, 533, 536
BccI	CCATC	2 cut(s)	211, 236
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	115
BfaI	CTAG	2 cut(s)	62, 566
BisI	GCNGC	8 cut(s)	76, 79, 160, 202, 251, 471, 522, 525
BlsI	GCNGC	8 cut(s)	77, 80, 161, 203, 252, 472, 523, 526
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	91, 111
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	65
Bpu10I	CCTNAGC	2 cut(s)	294, 323
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	113, 259
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 265
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	2 cut(s)	195, 506
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	113, 259
BseLI	CCNNNNNNNGG	2 cut(s)	217, 265
BseMI	GCAATG	2 cut(s)	195, 506
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	171, 237, 482, 533, 536
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	14, 118
BshNI	GGYRCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	217, 265
BsnI	GGCC	2 cut(s)	14, 118
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	4 cut(s)	30, 75, 78, 201
BspANI	GGCC	2 cut(s)	14, 118
BspCNI	CTCAG	1 cut(s)	286
BspDI	ATCGAT	1 cut(s)	168
BspEI	TCCGGA	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	91, 111
BspOI	GCTAGC	1 cut(s)	65
BspPI	GGATC	2 cut(s)	84, 97
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	195, 506
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	113, 259
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	238, 260
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	63, 248, 513
BstDEI	CTNAG	2 cut(s)	294, 323
BstDSI	CCRYGG	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	159, 475
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 512, 521
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	171, 237, 482, 533, 536
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	89
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	14, 118
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	2 cut(s)	57, 80
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	63, 248, 513
CfoI	GCGC	2 cut(s)	159, 475
Cfr13I	GGNCC	1 cut(s)	553
ClaI	ATCGAT	1 cut(s)	168
CviAII	CATG	2 cut(s)	106, 487
DdeI	CTNAG	2 cut(s)	294, 323
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EaeI	YGGCCR	2 cut(s)	12, 116
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	109, 490
FaiI	YATR	9 cut(s)	107, 276, 284, 308, 361, 417, 419, 488, 530
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FatI	CATG	2 cut(s)	105, 486
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	8 cut(s)	76, 79, 160, 202, 251, 471, 522, 525
Fsp4HI	GCNGC	8 cut(s)	76, 79, 160, 202, 251, 471, 522, 525
FspBI	CTAG	2 cut(s)	62, 566
GlaI	GCGC	2 cut(s)	158, 474
GluI	GCNGC	8 cut(s)	76, 79, 160, 202, 251, 471, 522, 525
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	14, 118
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	2 cut(s)	159, 475
Hin1II	CATG	2 cut(s)	109, 490
Hin6I	GCGC	2 cut(s)	157, 473
HinP1I	GCGC	2 cut(s)	157, 473
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	2 cut(s)	233, 448
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	212, 454
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	238, 260
HpyCH4V	TGCA	3 cut(s)	182, 253, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 512, 521
HpyF3I	CTNAG	2 cut(s)	294, 323
Hsp92II	CATG	2 cut(s)	109, 490
HspAI	GCGC	2 cut(s)	157, 473
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	100, 100, 127, 135, 168, 334, 497, 565
Lsp1109I	GCAGC	5 cut(s)	171, 237, 482, 533, 536
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	62, 566
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	59, 389, 490
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	2 cut(s)	14, 118
MluCI	AATT	5 cut(s)	300, 532, 541, 569, 586
MluNI	TGGCCA	2 cut(s)	14, 118
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	43, 46, 65, 190, 289, 349, 418, 424
Mox20I	TGGCCA	2 cut(s)	14, 118
MroI	TCCGGA	1 cut(s)	86
MscI	TGGCCA	2 cut(s)	14, 118
MseI	TTAA	2 cut(s)	540, 585
MslI	CAYNNNNRTG	1 cut(s)	124
Msp20I	TGGCCA	2 cut(s)	14, 118
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	467, 512, 521
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	109, 490
NlaIV	GGNNCC	2 cut(s)	91, 111
OliI	CACNNNNGTG	1 cut(s)	124
PkrI	GCNGC	8 cut(s)	77, 80, 161, 203, 252, 472, 523, 526
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	91, 111
PspPI	GGNCC	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	540, 585
SatI	GCNGC	8 cut(s)	76, 79, 160, 202, 251, 471, 522, 525
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	57, 324, 341, 350, 360, 429, 529
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	124
Sse9I	AATT	5 cut(s)	300, 532, 541, 569, 586
SsiI	CCGC	4 cut(s)	30, 75, 78, 201
SspMI	CTAG	2 cut(s)	62, 566
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	238, 260
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	300, 532, 541, 569, 586
TauI	GCSGC	3 cut(s)	78, 81, 204
Tru1I	TTAA	2 cut(s)	540, 585
Tru9I	TTAA	2 cut(s)	540, 585
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	5 cut(s)	159, 250, 470, 521, 524
TspDTI	ATGAA	3 cut(s)	60, 240, 545
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	1 cut(s)	569
XspI	CTAG	2 cut(s)	62, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.