Rorug01G0063100

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001403
Physical Location & Seq
Forward (+)
10393385 .. 10398809
5425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0063100.1

Sequence Viewer

Length: 1326 bp
ATGGGAAGCAAATCCTTGGCAAACTCTGTGGGATCCCAAACTACAAAACTACAACCAGTTTCACTCCAAGACACCACATGGTTGGTTGAAGGATCATCCACCAAGTCATATGTAACTATATCTGCTACTGACCCTCTGAGTGGAATCCATGAGGCAGTGATCCTGGCTAAATGCCCTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTAAAAAAGCCCTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAACTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACGCGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGACTTATGACTGCAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

441

Amino Acids

49.38

Weight (kDa)

5.62

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 270 - 303 3.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 630
AccI GTMKAC 1 cut(s) 314
AccII CGCG 2 cut(s) 196, 1084
AciI CCGC 4 cut(s) 451, 478, 718, 1084
AclWI GGATC 6 cut(s) 27, 40, 100, 154, 893, 1104
AcsI RAATTY 2 cut(s) 507, 796
AcuI CTGAAG 1 cut(s) 1013
AdeI CACNNNGTG 1 cut(s) 734
AfiI CCNNNNNNNGG 7 cut(s) 140, 389, 630, 908, 1021, 1220, 1221
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 5 cut(s) 89, 584, 693, 796, 1000
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 3 cut(s) 162, 388, 623
AloI GAACNNNNNNTCC 2 cut(s) 459, 491
AluBI AGCT 6 cut(s) 256, 578, 895, 968, 1079, 1265
AluI AGCT 6 cut(s) 256, 578, 895, 968, 1079, 1265
Alw21I GWGCWC 2 cut(s) 194, 1272
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 6 cut(s) 27, 40, 100, 154, 893, 1104
AlwNI CAGNNNCTG 2 cut(s) 578, 1241
Ama87I CYCGRG 3 cut(s) 708, 882, 1257
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 4 cut(s) 572, 575, 833, 836
ApoI RAATTY 2 cut(s) 507, 796
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspA2I CCTAGG 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 1224
AsuHPI GGTGA 3 cut(s) 476, 656, 1161
AvaI CYCGRG 3 cut(s) 708, 882, 1257
AvaII GGWCC 1 cut(s) 1224
AvrII CCTAGG 1 cut(s) 826
BamHI GGATCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 194, 1272
BbvI GCAGC 4 cut(s) 584, 587, 820, 823
BccI CCATC 6 cut(s) 210, 346, 806, 842, 866, 1193
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 3 cut(s) 164, 390, 625
BciVI GTATCC 1 cut(s) 816
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 4 cut(s) 683, 827, 869, 1073
BfmI CTRYAG 3 cut(s) 435, 550, 1030
BfuI GTATCC 1 cut(s) 816
BglI GCCNNNNNGGC 1 cut(s) 830
BisI GCNGC 4 cut(s) 573, 576, 834, 837
BlnI CCTAGG 1 cut(s) 826
BlpI GCTNAGC 2 cut(s) 714, 1266
BlsI GCNGC 4 cut(s) 574, 577, 835, 838
Bme1390I CCNGG 3 cut(s) 164, 390, 625
Bme18I GGWCC 1 cut(s) 1224
BmeRI GACNNNNNGTC 1 cut(s) 321
BmeT110I CYCGRG 3 cut(s) 708, 882, 1257
BmgT120I GGNCC 1 cut(s) 1224
BmiI GGNNCC 4 cut(s) 34, 228, 381, 1225
BmrFI CCNGG 3 cut(s) 164, 390, 625
BmsI GCATC 3 cut(s) 272, 652, 1111
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 1065
Bpu1102I GCTNAGC 2 cut(s) 714, 1266
BsaAI YACGTR 2 cut(s) 299, 320
BsaBI GATNNNNATC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 15, 623, 826
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 7 cut(s) 140, 389, 630, 908, 1021, 1220, 1221
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 3 cut(s) 792, 1063, 1194
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 3 cut(s) 164, 390, 625
BseDI CCNNGG 3 cut(s) 15, 623, 826
BseGI GGATG 2 cut(s) 95, 853
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 7 cut(s) 140, 389, 630, 908, 1021, 1220, 1221
BseMI GCAATG 3 cut(s) 792, 1063, 1194
BseMII CTCAG 5 cut(s) 128, 266, 1079, 1116, 1257
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 584, 587, 820, 823
Bsh1236I CGCG 2 cut(s) 196, 1084
BshFI GGCC 1 cut(s) 791
BsiHKAI GWGCWC 2 cut(s) 194, 1272
BsiHKCI CYCGRG 3 cut(s) 708, 882, 1257
BslFI GGGAC 1 cut(s) 1237
BslI CCNNNNNNNGG 7 cut(s) 140, 389, 630, 908, 1021, 1220, 1221
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 1237
BsnI GGCC 1 cut(s) 791
Bso31I GGTCTC 1 cut(s) 726
BsoBI CYCGRG 3 cut(s) 708, 882, 1257
Bsp1286I GDGCHC 3 cut(s) 194, 384, 1272
Bsp143I GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
Bsp1720I GCTNAGC 2 cut(s) 714, 1266
BspACI CCGC 4 cut(s) 451, 478, 718, 1084
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 5 cut(s) 129, 265, 1078, 1117, 1258
BspFNI CGCG 2 cut(s) 196, 1084
BspLI GGNNCC 4 cut(s) 34, 228, 381, 1225
BspPI GGATC 6 cut(s) 27, 40, 100, 154, 893, 1104
BspQI GCTCTTC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 726
BsrDI GCAATG 3 cut(s) 792, 1063, 1194
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 15, 623, 826
BssMI GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
BssT1I CCWWGG 2 cut(s) 15, 826
Bst2UI CCWGG 3 cut(s) 164, 390, 625
Bst4CI ACNGT 4 cut(s) 439, 464, 1020, 1323
Bst6I CTCTTC 2 cut(s) 182, 950
BstAPI GCANNNNNTGC 1 cut(s) 734
BstBAI YACGTR 2 cut(s) 299, 320
BstC8I GCNNGC 3 cut(s) 194, 667, 730
BstDEI CTNAG 7 cut(s) 137, 252, 714, 1065, 1125, 1266, 1273
BstF5I GGATG 2 cut(s) 95, 853
BstFNI CGCG 2 cut(s) 196, 1084
BstKTI GATC 6 cut(s) 35, 95, 162, 591, 901, 1099
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 734, 830, 974, 1076
BstNI CCWGG 3 cut(s) 164, 390, 625
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 162, 388, 623
BstSFI CTRYAG 3 cut(s) 435, 550, 1030
BstSNI TACGTA 1 cut(s) 299
BstUI CGCG 2 cut(s) 196, 1084
BstV1I GCAGC 4 cut(s) 584, 587, 820, 823
BstX2I RGATCY 2 cut(s) 32, 1096
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 32, 1096
BsuI GTATCC 1 cut(s) 816
BsuRI GGCC 1 cut(s) 791
BtsCI GGATG 2 cut(s) 95, 853
BtsI GCAGTG 2 cut(s) 162, 739
BtsIMutI CAGTG 4 cut(s) 162, 739, 989, 1225
Cac8I GCNNGC 3 cut(s) 194, 667, 730
CaiI CAGNNNCTG 2 cut(s) 578, 1241
Cfr13I GGNCC 1 cut(s) 1224
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 7 cut(s) 78, 149, 200, 208, 918, 1037, 1162
DdeI CTNAG 7 cut(s) 137, 252, 714, 1065, 1125, 1266, 1273
DpnI GATC 6 cut(s) 34, 94, 161, 590, 900, 1098
DpnII GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
DraI TTTAAA 1 cut(s) 673
DraIII CACNNNGTG 1 cut(s) 734
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 182, 950
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 2 cut(s) 182, 950
Eco105I TACGTA 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 15, 826
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 1 cut(s) 1224
Eco57I CTGAAG 1 cut(s) 1013
Eco88I CYCGRG 3 cut(s) 708, 882, 1257
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 162, 388, 623
EcoT14I CCWWGG 2 cut(s) 15, 826
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 15, 826
FaeI CATG 7 cut(s) 81, 152, 203, 211, 921, 1040, 1165
FalI AAGNNNNNCTT 2 cut(s) 1150, 1182
FaqI GGGAC 1 cut(s) 1237
FatI CATG 7 cut(s) 77, 148, 199, 207, 917, 1036, 1161
FauNDI CATATG 2 cut(s) 109, 942
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 4 cut(s) 573, 576, 834, 837
FokI GGATG 2 cut(s) 82, 860
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 573, 576, 834, 837
FspBI CTAG 4 cut(s) 683, 827, 869, 1073
GluI GCNGC 4 cut(s) 573, 576, 834, 837
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 791
Hin1II CATG 7 cut(s) 81, 152, 203, 211, 921, 1040, 1165
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 5 cut(s) 144, 248, 311, 406, 1238
HphI GGTGA 3 cut(s) 476, 656, 1161
Hpy166II GTNNAC 2 cut(s) 315, 467
Hpy188I TCNGA 5 cut(s) 138, 489, 540, 607, 1243
Hpy188III TCNNGA 5 cut(s) 592, 809, 902, 1073, 1259
Hpy8I GTNNAC 2 cut(s) 315, 467
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 4 cut(s) 83, 448, 856, 1081
HpyCH4III ACNGT 4 cut(s) 439, 464, 1020, 1323
HpyCH4IV ACGT 4 cut(s) 298, 319, 337, 648
HpyCH4V TGCA 9 cut(s) 211, 341, 728, 737, 785, 839, 940, 1235, 1317
HpyF10VI GCNNNNNNNGC 4 cut(s) 734, 830, 974, 1076
HpyF3I CTNAG 7 cut(s) 137, 252, 714, 1065, 1125, 1266, 1273
HpySE526I ACGT 4 cut(s) 298, 319, 337, 648
Hsp92II CATG 7 cut(s) 81, 152, 203, 211, 921, 1040, 1165
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 232, 379
Lsp1109I GCAGC 4 cut(s) 584, 587, 820, 823
LweI GCATC 3 cut(s) 272, 652, 1111
MaeI CTAG 4 cut(s) 683, 827, 869, 1073
MaeII ACGT 4 cut(s) 298, 319, 337, 648
MaeIII GTNAC 4 cut(s) 112, 323, 644, 649
MalI GATC 6 cut(s) 34, 94, 161, 590, 900, 1098
MboI GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
MboII GAAGA 2 cut(s) 199, 967
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 32, 1096
MhlI GDGCHC 3 cut(s) 194, 384, 1272
MluCI AATT 8 cut(s) 180, 243, 507, 524, 796, 1116, 1140, 1180
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 1074, 1113
MnlI CCTC 9 cut(s) 144, 145, 186, 232, 394, 490, 508, 907, 1144
MseI TTAA 2 cut(s) 672, 842
MspA1I CMGCKG 2 cut(s) 480, 578
MspR9I CCNGG 3 cut(s) 164, 390, 625
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 3 cut(s) 164, 390, 625
MvnI CGCG 2 cut(s) 196, 1084
MwoI GCNNNNNNNGC 4 cut(s) 734, 830, 974, 1076
NdeI CATATG 2 cut(s) 109, 942
NdeII GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
NlaIII CATG 7 cut(s) 81, 152, 203, 211, 921, 1040, 1165
NlaIV GGNNCC 4 cut(s) 34, 228, 381, 1225
NmuCI GTSAC 2 cut(s) 323, 644
NspI RCATGY 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 182
PfeI GAWTC 4 cut(s) 144, 248, 406, 1238
PflMI CCANNNNNTGG 1 cut(s) 630
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 4 cut(s) 574, 577, 835, 838
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 2 cut(s) 299, 320
Psp6I CCWGG 3 cut(s) 162, 388, 623
PspGI CCWGG 3 cut(s) 162, 388, 623
PspN4I GGNNCC 4 cut(s) 34, 228, 381, 1225
PspPI GGNCC 1 cut(s) 1224
PstNI CAGNNNCTG 2 cut(s) 578, 1241
PsuI RGATCY 2 cut(s) 32, 1096
PvuII CAGCTG 1 cut(s) 578
SalI GTCGAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 672, 842
SatI GCNGC 4 cut(s) 573, 576, 834, 837
Sau3AI GATC 6 cut(s) 32, 92, 159, 588, 898, 1096
Sau96I GGNCC 1 cut(s) 1224
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 164, 390, 625
SduI GDGCHC 3 cut(s) 194, 384, 1272
SfaNI GCATC 3 cut(s) 272, 652, 1111
SfcI CTRYAG 3 cut(s) 435, 550, 1030
SinI GGWCC 1 cut(s) 1224
SnaBI TACGTA 1 cut(s) 299
Sse9I AATT 8 cut(s) 180, 243, 507, 524, 796, 1116, 1140, 1180
SsiI CCGC 4 cut(s) 451, 478, 718, 1084
SspI AATATT 1 cut(s) 928
SspMI CTAG 4 cut(s) 683, 827, 869, 1073
StyD4I CCNGG 3 cut(s) 162, 388, 623
StyI CCWWGG 2 cut(s) 15, 826
TaaI ACNGT 4 cut(s) 439, 464, 1020, 1323
TaiI ACGT 4 cut(s) 301, 322, 340, 651
TaqI TCGA 2 cut(s) 237, 314
TasI AATT 8 cut(s) 180, 243, 507, 524, 796, 1116, 1140, 1180
TfiI GAWTC 4 cut(s) 144, 248, 406, 1238
Tru1I TTAA 2 cut(s) 672, 842
Tru9I TTAA 2 cut(s) 672, 842
TscAI CASTG 4 cut(s) 162, 739, 996, 1225
TseFI GTSAC 2 cut(s) 323, 644
TseI GCWGC 4 cut(s) 572, 575, 833, 836
Tsp45I GTSAC 2 cut(s) 323, 644
TspDTI ATGAA 1 cut(s) 627
TspRI CASTG 4 cut(s) 162, 739, 996, 1225
Van91I CCANNNNNTGG 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 1224
XapI RAATTY 2 cut(s) 507, 796
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 4 cut(s) 683, 827, 869, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.