Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Reverse (-)

53709026 .. 53713704

Gene Structure 4679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTGGTTGATTGGCGAGGGTTTCACCGGAGCGAGGTCGAGCAGCATCTCGATATGGTGGCTTTGGCCACTTTTTCTTGTGGCGGTGGGGCTGGCGATGAAGAGGCGGTGGGGCTAGCGATGAAGAGGCGGCGGCGACTCCGAATCCGAAAGATTGGGCATGGTGGCCTGGCCACCAGTGCGGAGTTCCTTTCAAAGATGTGGTTGTCAGTGCAGCATCATCAATCGTGGACTTGCAGGAGCAATGGTGGTGGGCGGCGACTTCCGAATGATGGTGCTCAAATCCAATGTCAGAGCAAAGCAAATTTGCTCAGCATGAATGGGCTTCCTCTCTCATTCAAGCTTGGGGAGCAGCTTAAGTTTCTTCCTGATCAAATCAAAGATATGTTCAACATAAAAGGGGCAAGAACTTTCCACTTTGTCCTCACCCCTGCAGTTGGTGGAAGGGGTGAATGGTTTGGTTTCAGAACTTGCTGTTGTAGCAGTGCATATGGCAGCCGCCCCACCCCATATGAACCAAATGGTTTGGTTTCAGAACTTGCTGTTGTAGCAGTGCATATGGCAGCCGCCCCACCCCATATGAACCAAGTTCCTCCACTGAGTAGCACTGTACAGAAACCTCCATATGTGGGTGATGAACAACAGACAGTAGATGGCTTGCTGCAACACCTCAGATTAGGAAAATATGCCATTATATTCAACGCTGAGGAAATTGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAAGAGCTGGGAATACCTATGGTGGATGGGGTGAATGGTTTGGTTTCAGAACTTGCTGTTGTAGCAACGCAGAAGAAAGCCATGCTTGACAAATGTGAAGCATTGCTGGCTTCAACAAGAGCTATGAATTGTTTTAATTTTTGTTTGGTCCTTTGCTTACTAGAATTTAGGGACAGGGGGTTAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

315

Amino Acids

34.52

Weight (kDa)

8.31

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	214 - 256	2.8e-08	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	84, 107, 130, 133, 182, 256, 499, 567
AcoI	YGGCCR	2 cut(s)	66, 171
AcsI	RAATTY	2 cut(s)	304, 917
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	4 cut(s)	34, 272, 437, 629
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	6 cut(s)	195, 340, 391, 700, 730, 867
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	343, 355, 760, 875
AluI	AGCT	4 cut(s)	343, 355, 760, 875
Alw21I	GWGCWC	1 cut(s)	280
AoxI	GGCC	3 cut(s)	66, 166, 171
ApeKI	GCWGC	6 cut(s)	43, 214, 352, 495, 563, 661
ApoI	RAATTY	2 cut(s)	304, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
AspS9I	GGNCC	1 cut(s)	901
AsuHPI	GGTGA	5 cut(s)	17, 418, 461, 644, 796
AsuNHI	GCTAGC	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	901
BalI	TGGCCA	2 cut(s)	68, 173
Bbv12I	GWGCWC	1 cut(s)	280
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	6 cut(s)	55, 226, 364, 507, 575, 648
BccI	CCATC	4 cut(s)	266, 647, 730, 773
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	116, 914
BfmI	CTRYAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	356
BlpI	GCTNAGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	901
BmgT120I	GGNCC	1 cut(s)	901
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	55, 226
BmtI	GCTAGC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 272, 437, 629
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	250, 854
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	4 cut(s)	34, 272, 437, 629
BseMI	GCAATG	2 cut(s)	250, 854
BseMII	CTCAG	4 cut(s)	325, 590, 685, 696
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	6 cut(s)	55, 226, 364, 507, 575, 648
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	68, 168, 173
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	4 cut(s)	34, 272, 437, 629
BsmFI	GGGAC	1 cut(s)	938
BsnI	GGCC	3 cut(s)	68, 168, 173
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	1 cut(s)	370
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	8 cut(s)	84, 107, 130, 133, 182, 256, 499, 567
BspANI	GGCC	3 cut(s)	68, 168, 173
BspCNI	CTCAG	4 cut(s)	324, 591, 684, 697
BspMAI	CTGCAG	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	250, 854
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	610, 649
Bst6I	CTCTTC	2 cut(s)	96, 119
BstAFI	CTTAAG	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	94, 117, 659, 861
BstDEI	CTNAG	4 cut(s)	311, 599, 671, 705
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 349, 480, 548, 815, 860
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	6 cut(s)	55, 226, 364, 507, 575, 648
BsuRI	GGCC	3 cut(s)	68, 168, 173
BtgZI	GCGATG	2 cut(s)	111, 134
BtsCI	GGATG	1 cut(s)	784
BtsI	GCAGTG	2 cut(s)	490, 558
BtsIMutI	CAGTG	6 cut(s)	184, 216, 490, 558, 596, 606
Cac8I	GCNNGC	4 cut(s)	94, 117, 659, 861
Cfr13I	GGNCC	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	611
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	161, 316, 835
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	4 cut(s)	311, 599, 671, 705
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	66, 171
Eam1104I	CTCTTC	2 cut(s)	96, 119
EarI	CTCTTC	2 cut(s)	96, 119
Eco47I	GGWCC	1 cut(s)	901
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	164, 319, 838
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	3 cut(s)	160, 315, 834
FauNDI	CATATG	5 cut(s)	490, 511, 558, 579, 625
FbaI	TGATCA	1 cut(s)	370
FokI	GGATG	1 cut(s)	791
FspBI	CTAG	2 cut(s)	116, 914
GsaI	CCCAGC	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	68, 168, 173
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	3 cut(s)	164, 319, 838
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	138, 144
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	5 cut(s)	17, 418, 461, 644, 796
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	8 cut(s)	143, 149, 267, 294, 467, 535, 674, 802
Hpy188III	TCNNGA	2 cut(s)	50, 368
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	2 cut(s)	610, 649
HpyCH4V	TGCA	7 cut(s)	214, 237, 434, 488, 556, 664, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 349, 480, 548, 815, 860
HpyF3I	CTNAG	4 cut(s)	311, 599, 671, 705
Hsp92II	CATG	3 cut(s)	164, 319, 838
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	3 cut(s)	30, 240, 349
Lsp1109I	GCAGC	6 cut(s)	55, 226, 364, 507, 575, 648
LweI	GCATC	2 cut(s)	55, 226
MaeI	CTAG	2 cut(s)	116, 914
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	4 cut(s)	113, 136, 356, 838
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	2 cut(s)	68, 173
MluCI	AATT	6 cut(s)	304, 711, 880, 889, 917, 936
MluNI	TGGCCA	2 cut(s)	68, 173
MlyI	GAGTC	1 cut(s)	132
Mox20I	TGGCCA	2 cut(s)	68, 173
MscI	TGGCCA	2 cut(s)	68, 173
MseI	TTAA	3 cut(s)	357, 888, 935
Msp20I	TGGCCA	2 cut(s)	68, 173
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	6 cut(s)	179, 349, 480, 548, 815, 860
NdeI	CATATG	5 cut(s)	490, 511, 558, 579, 625
NdeII	GATC	1 cut(s)	370
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	164, 319, 838
PfeI	GAWTC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	3 cut(s)	357, 888, 935
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	9 cut(s)	39, 345, 357, 622, 672, 753, 762, 772, 877
SfaNI	GCATC	2 cut(s)	55, 226
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	901
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	6 cut(s)	304, 711, 880, 889, 917, 936
SsiI	CCGC	8 cut(s)	84, 107, 130, 133, 182, 256, 499, 567
SspMI	CTAG	2 cut(s)	116, 914
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	610, 649
TaqI	TCGA	2 cut(s)	39, 51
TasI	AATT	6 cut(s)	304, 711, 880, 889, 917, 936
TatI	WGTACW	1 cut(s)	610
TauI	GCSGC	5 cut(s)	133, 136, 259, 501, 569
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	3 cut(s)	357, 888, 935
Tru9I	TTAA	3 cut(s)	357, 888, 935
TscAI	CASTG	6 cut(s)	184, 216, 490, 558, 603, 613
TseI	GCWGC	6 cut(s)	43, 214, 352, 495, 563, 661
TspDTI	ATGAA	7 cut(s)	114, 137, 332, 528, 596, 651, 893
TspRI	CASTG	6 cut(s)	184, 216, 490, 558, 603, 613
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	901
XapI	RAATTY	2 cut(s)	304, 917
XspI	CTAG	2 cut(s)	116, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.