Rorug02G0548300

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001403
Physical Location & Seq
Reverse (-)
67602929 .. 67607491
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0548300.1

Sequence Viewer

Length: 819 bp
ATGAGTCGTTACGATGCTAACCCCTTCGCTGAGGAAGATGTTAATCCCTTTGCGGATGGTAAAGGTCTTTCACCCCTTCCCCCTGAACGCTATGATCGCGGTGCAACGATTGATATACCTCTTGATAATTCTAGGAGTTTAAAAGACCAGGAGAAGGAACTCAAAGCTAGAGAGGCTGAATTGAAAAGGAGGGAACAGGAAATAAAGCGGAAAGAAGAGAACGTAAAAAAAGCTGGAGGTTTTAGTACCGACAAAAACTGGCCTCCATTTTACCCCATCATTCATCATGACATTGCAAATGAAATACCAATCCACCTACAGAAGATCCAGTATGTTGCGTTGACGACATATTTGGGTTTAGTTGTGACTCTGTTGTGGAATATTATTGCGGTTACTGTATTTTTGTTCCATGGAGGAGGTATAATCAATTGGATAATGTCTGTTATCTACTTCGTAACAACTTGTCCTCTTGCATATTTTCTCTGGTATCGCCCTCTTTATCGTGCTATGAGGACCGATAGTTCCCTAAGTTTTGCTGGGTTTTTCCTCTGTTACACTTTCCATATTGGATTTTGCATCTATTGTGCACTTGCTCCTCCAATTATCTCGGGAGGACTATCTCTTACAGGTATTTTGTCTGCAATAGCATTAATTACTCTCAACCAGGTTACGGTTGCGATATTTTTCTTCATTGGATTTGGGATGTTTGTCATCGAAACACTAATGAGCATCTGGGTTCTTAAGCAAGTATTAACCTACTTCAGAAGCAGTGGCAAAGCTCAAGACATGAAGCGTGATGCTGTAAGGGCAGCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

272

Amino Acids

30.87

Weight (kDa)

8.58

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 85 - 257 4.6e-53 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 53, 99, 208, 389
AclWI GGATC 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 745
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 154, 670
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 147, 663
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 3 cut(s) 167, 233, 779
AluI AGCT 3 cut(s) 167, 233, 779
Alw21I GWGCWC 1 cut(s) 589
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 809
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AseI ATTAAT 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 50, 284
BciT130I CCWGG 2 cut(s) 149, 665
BfaI CTAG 2 cut(s) 132, 168
BfmI CTRYAG 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 740
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 149, 665
Bme18I GGWCC 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 513
BmrFI CCNGG 2 cut(s) 149, 665
BmsI GCATC 4 cut(s) 4, 585, 738, 787
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 765
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 670
Bse1I ACTGG 2 cut(s) 263, 328
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 149, 665
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 61, 708
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 154, 670
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 263, 328
BseRI GAGGAG 2 cut(s) 429, 585
BseSI GKGCMC 1 cut(s) 589
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 607
BslI CCNNNNNNNGG 2 cut(s) 154, 670
BsnI GGCC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 94, 324
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 4 cut(s) 53, 99, 208, 389
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 263, 328
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 94, 324
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 149, 665
Bst4CI ACNGT 2 cut(s) 397, 673
Bst6I CTCTTC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 740
BstDEI CTNAG 2 cut(s) 30, 527
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 61, 708
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 2 cut(s) 97, 327
BstMBI GATC 2 cut(s) 94, 324
BstMWI GCNNNNNNNGC 3 cut(s) 96, 173, 806
BstNI CCWGG 2 cut(s) 149, 665
BstSCI CCNGG 2 cut(s) 147, 663
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 61, 708
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 1 cut(s) 775
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 513
CsiI ACCWGGT 1 cut(s) 663
Csp6I GTAC 1 cut(s) 246
CviAII CATG 3 cut(s) 287, 410, 787
CviJI RGCY 5 cut(s) 167, 176, 233, 262, 779
CviKI_1 RGCY 5 cut(s) 167, 176, 233, 262, 779
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 30, 527
DpnI GATC 2 cut(s) 96, 326
DpnII GATC 2 cut(s) 94, 324
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 607
EcoRII CCWGG 2 cut(s) 147, 663
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 3 cut(s) 290, 413, 790
FatI CATG 3 cut(s) 286, 409, 786
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 2 cut(s) 68, 715
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 2 cut(s) 132, 168
GluI GCNGC 1 cut(s) 810
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 3 cut(s) 290, 413, 790
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 2 cut(s) 4, 367
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 342, 587
Hpy188I TCNGA 1 cut(s) 764
Hpy188III TCNNGA 4 cut(s) 122, 287, 609, 782
Hpy8I GTNNAC 2 cut(s) 342, 587
HpyAV CCTTC 3 cut(s) 34, 86, 148
HpyCH4III ACNGT 2 cut(s) 397, 673
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 104, 296, 473, 576, 587, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 173, 806
HpyF3I CTNAG 2 cut(s) 30, 527
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 290, 413, 790
Kzo9I GATC 2 cut(s) 94, 324
LmnI GCTCC 1 cut(s) 598
LweI GCATC 4 cut(s) 4, 585, 738, 787
MabI ACCWGGT 1 cut(s) 663
MaeI CTAG 2 cut(s) 132, 168
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 6 cut(s) 8, 364, 391, 454, 551, 667
MalI GATC 2 cut(s) 96, 326
MboI GATC 2 cut(s) 94, 324
MboII GAAGA 4 cut(s) 47, 227, 334, 679
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 5 cut(s) 127, 179, 427, 600, 651
MlyI GAGTC 2 cut(s) 13, 361
MseI TTAA 5 cut(s) 42, 140, 650, 741, 752
MspCI CTTAAG 1 cut(s) 740
MspR9I CCNGG 2 cut(s) 149, 665
MunI CAATTG 1 cut(s) 427
MvaI CCWGG 2 cut(s) 149, 665
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 96, 173, 806
NcoI CCATGG 1 cut(s) 409
NdeII GATC 2 cut(s) 94, 324
NlaIII CATG 3 cut(s) 290, 413, 790
NmuCI GTSAC 1 cut(s) 364
PagI TCATGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 811
PleI GAGTC 2 cut(s) 12, 361
PpsI GAGTC 2 cut(s) 12, 361
PshBI ATTAAT 1 cut(s) 650
Psp6I CCWGG 2 cut(s) 147, 663
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 147, 663
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 5 cut(s) 42, 140, 650, 741, 752
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 2 cut(s) 94, 324
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 2 cut(s) 13, 361
ScrFI CCNGG 2 cut(s) 149, 665
SduI GDGCHC 1 cut(s) 589
SexAI ACCWGGT 1 cut(s) 663
SfaNI GCATC 4 cut(s) 4, 585, 738, 787
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 740, 780
SmoI CTYRAG 2 cut(s) 740, 780
Sse9I AATT 5 cut(s) 127, 179, 427, 600, 651
SsiI CCGC 4 cut(s) 53, 99, 208, 389
SspI AATATT 1 cut(s) 382
SspMI CTAG 2 cut(s) 132, 168
StyD4I CCNGG 2 cut(s) 147, 663
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 397, 673
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 714
TaqII GACCGA 1 cut(s) 530
TasI AATT 5 cut(s) 127, 179, 427, 600, 651
Tru1I TTAA 5 cut(s) 42, 140, 650, 741, 752
Tru9I TTAA 5 cut(s) 42, 140, 650, 741, 752
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 4 cut(s) 272, 315, 679, 803
TspRI CASTG 1 cut(s) 775
Vha464I CTTAAG 1 cut(s) 740
VneI GTGCAC 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 513
VspI ATTAAT 1 cut(s) 650
XspI CTAG 2 cut(s) 132, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.