Rorug04G0061700

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001403
Physical Location & Seq
Reverse (-)
9670024 .. 9670215
192 bp
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UTR
Exon/CDS
Intron
Rorug04G0061700.1

Sequence Viewer

Length: 192 bp
ATGAAAGTCTTTCTTCTTTTTCCTGACGACAACAACGACGATGGTGGTGAGGGCTCATCGAGCCAACTAGGCACTGGGCTGAATGGATACGCCAAGGGGCCGTCGGCTCTTTCGGTGTACTTGGGCTGTCTAGATTGTGCTTCTATTGGGGTTTGGTTAGTATGGGGTGCCTTGACACCCTCATACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

63

Amino Acids

6.56

Weight (kDa)

4.17

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AfaI GTAC 1 cut(s) 119
AoxI GGCC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 56
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 85
BciVI GTATCC 1 cut(s) 80
BfaI CTAG 2 cut(s) 68, 131
BfuI GTATCC 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 99, 169
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 79
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 167
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 56
BspANI GGCC 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 99, 169
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 60, 69
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 6 cut(s) 54, 63, 79, 100, 107, 126
CviKI_1 RGCY 6 cut(s) 54, 63, 79, 100, 107, 126
CviQI GTAC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 2 cut(s) 163, 184
FalI AAGNNNNNCTT 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 2 cut(s) 68, 131
HaeIII GGCC 1 cut(s) 100
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 23, 131
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 41, 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 69
LpnPI CCDG 2 cut(s) 36, 60
MaeI CTAG 2 cut(s) 68, 131
MboII GAAGA 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 56
MnlI CCTC 2 cut(s) 43, 190
MslI CAYNNNNRTG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 60, 69
NlaIV GGNNCC 2 cut(s) 99, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 99, 169
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 56
SgeI CNNG 8 cut(s) 35, 72, 80, 87, 106, 133, 143, 184
SmiMI CAYNNNNRTG 1 cut(s) 187
SspMI CTAG 2 cut(s) 68, 131
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 59
TatI WGTACW 1 cut(s) 117
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 68, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.