Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

37336626 .. 37339529

Gene Structure 2904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCGAAGCCCAGGGTCACCATCACCCTCGGCCGCTCTGGTCAGGTTGTGGAGAGGGGAGGAACATCAGGCTCTGCACAAATGCGTGGCGAAAGAGGTATGGTTTCGGGAGGGAAACGATCGATGGGAGACAGGCTTGGGAGTAATGCTCATGGCAAGCGGCAACGAGGAGATGGAATAAAATGGAGAGGGGGTGACAATACATTACATGATTCACGAATCAGTCGAAATGACCTCAGATTGACACTGTTGCGCAAAAGATCATTAAAGCAAAATGGGGGAGGTATTGCAGAACACAAGCAGATGGTCCAGCGCCCAAAGCTGTCAAAACCTGCTCATTCTGCAGTGAGCTATCAGATGTCACAGCATGAGTCAGAAACAAATGAGAATAGCTTCCTGAGAAAAATTCCTCCCAGGGAAAGTGCAGCTGATTTGTACCATGTAAATTCACAGAGGAACTTCAACTCTTCTCAAAGTAGAGAAGGATTCCGAGCTAGATCCCCTGATAGCTTTCAGAACACTTCTTATGGGCCTTCATCACAAAGAAACTTTGGTGAGCTGCAGTCAGCATCATCATTCAGGCCAGTTGACGCTCCTAGAGCTGGCCAGTTCCTCAGAAATGGTATGGTTGGTTCGTCTCAGCCAACAGACTTTATTTTCAGAACGAAGTCTAACCCTCAAACTGCCAAGCCAGTTGGACAGCTTGTGCCAACAAATTACAGCATGCAAAAAGTCTCTTATATGGGGGAAGAACCTCTAAGTGTTGCTAGTTTATTGCATAGACTTGGTTTGGGAAAATATGCTATTATTTTCCAGGCTGAAGAAGTAGACATGAGTGCTTTGAAGCAGATGGGCGATAAGGACCTCAAGGAGCTGGGTATACCAATGGGGCCAAGGAAAAAGATTCTCCTTGCAGTTCTGGCCCGTGGTAAACGACCACCGCCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

317

Amino Acids

34.83

Weight (kDa)

10.77

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	253 - 306	6.4e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	254 - 306	2.3e-08	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	36
AccI	GTMKAC	2 cut(s)	828, 880
AciI	CCGC	3 cut(s)	34, 160, 941
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	2 cut(s)	31, 604
AcsI	RAATTY	2 cut(s)	405, 445
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	463, 844
AjnI	CCWGG	3 cut(s)	11, 413, 813
Alw26I	GTCTC	3 cut(s)	123, 642, 739
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	6 cut(s)	31, 530, 581, 604, 890, 921
ApeKI	GCWGC	2 cut(s)	425, 559
ApoI	RAATTY	2 cut(s)	405, 445
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	255, 315
AspS9I	GGNCC	5 cut(s)	307, 530, 862, 890, 922
AsuHPI	GGTGA	4 cut(s)	10, 16, 206, 566
AvaII	GGWCC	2 cut(s)	307, 862
BalI	TGGCCA	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	437, 546
BccI	CCATC	5 cut(s)	29, 118, 167, 298, 844
BciT130I	CCWGG	3 cut(s)	13, 415, 815
BcoDI	GTCTC	3 cut(s)	123, 642, 739
BfaI	CTAG	3 cut(s)	495, 597, 768
BfmI	CTRYAG	2 cut(s)	342, 560
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	34, 161, 426, 560
BlsI	GCNGC	4 cut(s)	35, 162, 427, 561
Bme1390I	CCNGG	3 cut(s)	13, 415, 815
Bme18I	GGWCC	2 cut(s)	307, 862
BmgT120I	GGNCC	5 cut(s)	307, 530, 862, 890, 922
BmiI	GGNNCC	1 cut(s)	891
BmrFI	CCNGG	3 cut(s)	13, 415, 815
BmsI	GCATC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpuEI	CTTGAG	1 cut(s)	851
Bsa29I	ATCGAT	1 cut(s)	122
BsaJI	CCNNGG	7 cut(s)	11, 12, 28, 413, 414, 893, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	3 cut(s)	584, 607, 692
BseBI	CCWGG	3 cut(s)	13, 415, 815
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	7 cut(s)	11, 12, 28, 413, 414, 893, 925
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	4 cut(s)	250, 389, 628, 653
BseNI	ACTGG	3 cut(s)	584, 607, 692
BseRI	GAGGAG	1 cut(s)	183
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	437, 546
BseYI	CCCAGC	1 cut(s)	874
BsgI	GTGCAG	2 cut(s)	60, 444
Bsh1285I	CGRYCG	2 cut(s)	34, 122
BshFI	GGCC	6 cut(s)	33, 532, 583, 606, 892, 923
BshVI	ATCGAT	1 cut(s)	122
BsiEI	CGRYCG	2 cut(s)	34, 122
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	3 cut(s)	123, 642, 739
BsmBI	CGTCTC	1 cut(s)	642
BsnI	GGCC	6 cut(s)	33, 532, 583, 606, 892, 923
Bsp143I	GATC	3 cut(s)	119, 260, 497
BspACI	CCGC	3 cut(s)	34, 160, 941
BspANI	GGCC	6 cut(s)	33, 532, 583, 606, 892, 923
BspCNI	CTCAG	4 cut(s)	249, 390, 627, 652
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	891
BspMAI	CTGCAG	2 cut(s)	346, 564
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	584, 607, 692
BssECI	CCNNGG	7 cut(s)	11, 12, 28, 413, 414, 893, 925
BssMI	GATC	3 cut(s)	119, 260, 497
BssNAI	GTATAC	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	893
Bst1107I	GTATAC	1 cut(s)	881
Bst2UI	CCWGG	3 cut(s)	13, 415, 815
Bst4CI	ACNGT	2 cut(s)	249, 948
Bst6I	CTCTTC	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	158, 604, 725
BstDEI	CTNAG	5 cut(s)	236, 398, 614, 639, 758
BstDSI	CCRYGG	1 cut(s)	925
BstEII	GGTNACC	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	255, 315
BstKTI	GATC	3 cut(s)	122, 263, 500
BstMAI	GTCTC	3 cut(s)	123, 642, 739
BstMBI	GATC	3 cut(s)	119, 260, 497
BstMCI	CGRYCG	2 cut(s)	34, 122
BstMWI	GCNNNNNNNGC	4 cut(s)	319, 341, 599, 920
BstNI	CCWGG	3 cut(s)	13, 415, 815
BstNSI	RCATGY	1 cut(s)	727
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	11, 413, 813
BstSFI	CTRYAG	2 cut(s)	342, 560
BstV1I	GCAGC	2 cut(s)	437, 546
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BstZ17I	GTATAC	1 cut(s)	881
BstZI	CGGCCG	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	6 cut(s)	33, 532, 583, 606, 892, 923
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	925
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	245, 351
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	158, 604, 725
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	255, 315
Cfr13I	GGNCC	5 cut(s)	307, 530, 862, 890, 922
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	6 cut(s)	152, 209, 368, 440, 724, 832
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	5 cut(s)	236, 398, 614, 639, 758
DpnI	GATC	3 cut(s)	121, 262, 499
DpnII	GATC	3 cut(s)	119, 260, 497
EaeI	YGGCCR	2 cut(s)	31, 604
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	893
Eco47I	GGWCC	2 cut(s)	307, 862
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	840
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	862
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	11, 413, 813
EcoT14I	CCWWGG	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	893
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	6 cut(s)	155, 212, 371, 443, 727, 835
FatI	CATG	6 cut(s)	151, 208, 367, 439, 723, 831
FblI	GTMKAC	2 cut(s)	828, 880
Fnu4HI	GCNGC	4 cut(s)	34, 161, 426, 560
Fsp4HI	GCNGC	4 cut(s)	34, 161, 426, 560
FspBI	CTAG	3 cut(s)	495, 597, 768
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	2 cut(s)	254, 314
GluI	GCNGC	4 cut(s)	34, 161, 426, 560
GsaI	CCCAGC	1 cut(s)	878
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	6 cut(s)	33, 532, 583, 606, 892, 923
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	255, 315
Hin1II	CATG	6 cut(s)	155, 212, 371, 443, 727, 835
Hin6I	GCGC	2 cut(s)	253, 313
HinP1I	GCGC	2 cut(s)	253, 313
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	5 cut(s)	212, 219, 371, 486, 904
HphI	GGTGA	4 cut(s)	10, 16, 206, 566
Hpy166II	GTNNAC	4 cut(s)	589, 829, 881, 932
Hpy188I	TCNGA	7 cut(s)	239, 357, 376, 491, 516, 617, 662
Hpy188III	TCNNGA	3 cut(s)	108, 216, 397
Hpy8I	GTNNAC	4 cut(s)	589, 829, 881, 932
HpyAV	CCTTC	2 cut(s)	476, 543
HpyCH4III	ACNGT	2 cut(s)	249, 948
HpyCH4V	TGCA	8 cut(s)	77, 290, 344, 425, 562, 727, 778, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	319, 341, 599, 920
HpyF3I	CTNAG	5 cut(s)	236, 398, 614, 639, 758
Hsp92II	CATG	6 cut(s)	155, 212, 371, 443, 727, 835
HspAI	GCGC	2 cut(s)	253, 313
Kzo9I	GATC	3 cut(s)	119, 260, 497
LmnI	GCTCC	2 cut(s)	598, 871
Lsp1109I	GCAGC	2 cut(s)	437, 546
LweI	GCATC	1 cut(s)	578
MaeI	CTAG	3 cut(s)	495, 597, 768
MaeIII	GTNAC	3 cut(s)	16, 194, 360
MalI	GATC	3 cut(s)	121, 262, 499
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	3 cut(s)	119, 260, 497
MboII	GAAGA	3 cut(s)	459, 761, 833
MflI	RGATCY	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	3 cut(s)	405, 445, 715
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	13, 415, 815
MvaI	CCWGG	3 cut(s)	13, 415, 815
MwoI	GCNNNNNNNGC	4 cut(s)	319, 341, 599, 920
NdeII	GATC	3 cut(s)	119, 260, 497
NlaIII	CATG	6 cut(s)	155, 212, 371, 443, 727, 835
NlaIV	GGNNCC	1 cut(s)	891
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	3 cut(s)	16, 194, 360
NsbI	TGCGCA	1 cut(s)	254
NspI	RCATGY	1 cut(s)	727
PaeI	GCATGC	1 cut(s)	727
PasI	CCCWGGG	2 cut(s)	12, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	212, 219, 486, 904
PkrI	GCNGC	4 cut(s)	35, 162, 427, 561
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	862
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	3 cut(s)	11, 413, 813
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	3 cut(s)	11, 413, 813
PspN4I	GGNNCC	1 cut(s)	891
PspPI	GGNCC	5 cut(s)	307, 530, 862, 890, 922
PspPPI	RGGWCCY	1 cut(s)	862
PsrI	GAACNNNNNNTAC	2 cut(s)	616, 648
PstI	CTGCAG	2 cut(s)	346, 564
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	34, 161, 426, 560
Sau3AI	GATC	3 cut(s)	119, 260, 497
Sau96I	GGNCC	5 cut(s)	307, 530, 862, 890, 922
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	13, 415, 815
SfaNI	GCATC	1 cut(s)	578
SfcI	CTRYAG	2 cut(s)	342, 560
SinI	GGWCC	2 cut(s)	307, 862
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	3 cut(s)	405, 445, 715
SsiI	CCGC	3 cut(s)	34, 160, 941
SspMI	CTAG	3 cut(s)	495, 597, 768
StyD4I	CCNGG	3 cut(s)	11, 413, 813
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	2 cut(s)	249, 948
TaqI	TCGA	3 cut(s)	5, 122, 226
TasI	AATT	3 cut(s)	405, 445, 715
TauI	GCSGC	2 cut(s)	36, 163
TfiI	GAWTC	4 cut(s)	212, 219, 486, 904
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	252, 351
TseFI	GTSAC	3 cut(s)	16, 194, 360
TseI	GCWGC	2 cut(s)	425, 559
Tsp45I	GTSAC	3 cut(s)	16, 194, 360
TspDTI	ATGAA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	252, 351
VpaK11BI	GGWCC	2 cut(s)	307, 862
XapI	RAATTY	2 cut(s)	405, 445
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	2 cut(s)	828, 880
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	3 cut(s)	495, 597, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.