Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

5969499 .. 5973743

Gene Structure 4245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1085300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCAGGGAATTCGAGGGGTCGAGTCACCATCACGCTTGGGCGCGGTGGCCAGGTAGTGAAGAGGTCTGTTTCGGGGTCTTCATTAGCTGATTCTATACCTGTGGCTGGGACCAAGCGGTCTGTTAGAGATAGATTAGGAAGTAATGTAGACGGTTCTTTGTCGCATGGAAGCTTACACAACAATAAACGCCAGCGAGGAGACAATGATAGGTCAAGTTTGAATTTCAATGGTTACGATGATGCACACATTGGTAAAGGTGATCTTCGATTTAAACTCATGCAAAAAAATGCATTTAGACGAGCTCAGAGTGATGATGGTCAGAGGCATGGGGACCTTCGTGAGAAGCTTTCAAAGGCAGTTCAGCGCCCTGTCACTGTCCACGAGTCACGTCAGCACCTTCCTGAAATAAAAGAGACTAGCTTTATGGGTCGAATTCCTTCTTCAAGGGCAGATGATTTGCCTCATGTGGACTCATTAAGAAATTCTTATTCCCCTTGGACTCTGGATCATTTAAGACGAAGATCCCCAGATAGAGTTGTAGTCACTTCTAGGGGTCTCTCCCCTCCGAGGAATCCTGAAGAATTGCAGAGAAGGCCACTAAGCAGGGCATTTGATGATGTCAGATCGGATTCATATATGAGGAAAGATGTTCTCAGTGCTACAAGGCCTGCAAGTACTGTTCCTTTCATGTCCAGTTCTCCGTTGCCTCATGTGTCTGCGAAACCTGTGGCCCCACCCCCACCCCACTTGAGTCAAATTCCTCCACCGAGCAGTATTGTTCAGAAAAGTTCATATGTGGGTGATGAACAGCAGACTGTAGATGGCTTGCTACATACGCTGGGATTGGGAAAATATGCCATTATTTTTAAGGCTGAGGAAATTGATATGGCCGCATTGAAGCAGATGGGAGAACATGATCTCAAAGAGCTGGGAATACCTATGGGACCTAGGAAGAAGCTTCTTCTTGCTCTCCTGCCTCGTTCCAAGCGGCCTCCAGCGACAAATATACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

339

Amino Acids

37.39

Weight (kDa)

10.47

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	271 - 325	1.5e-12	SAM domain (Sterile alpha motif)
SAM_2	PF07647	272 - 324	3.6e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	45
AciI	CCGC	4 cut(s)	45, 118, 894, 991
AclWI	GGATC	2 cut(s)	516, 519
AcoI	YGGCCR	2 cut(s)	49, 891
AcsI	RAATTY	5 cut(s)	10, 223, 435, 484, 759
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	2 cut(s)	107, 570
AgsI	TTSAA	5 cut(s)	223, 229, 354, 447, 901
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	7 cut(s)	89, 174, 305, 349, 423, 931, 961
AluI	AGCT	7 cut(s)	89, 174, 305, 349, 423, 931, 961
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	3 cut(s)	195, 410, 563
AlwI	GGATC	2 cut(s)	516, 519
AoxI	GGCC	6 cut(s)	49, 596, 668, 732, 891, 992
ApoI	RAATTY	5 cut(s)	10, 223, 435, 484, 759
Asp700I	GAANNNNTTC	1 cut(s)	439
AspA2I	CCTAGG	1 cut(s)	950
AspLEI	GCGC	2 cut(s)	45, 369
AspS9I	GGNCC	4 cut(s)	111, 334, 733, 947
AsuHPI	GGTGA	3 cut(s)	19, 272, 815
AvaII	GGWCC	3 cut(s)	111, 334, 947
AvrII	CCTAGG	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	876
BccI	CCATC	4 cut(s)	38, 311, 818, 901
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	195, 410, 563
BfaI	CTAG	3 cut(s)	420, 552, 951
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	894, 992
BlnI	CCTAGG	1 cut(s)	950
BlsI	GCNGC	2 cut(s)	895, 993
BmcAI	AGTACT	1 cut(s)	679
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	111, 334, 947
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	4 cut(s)	111, 334, 733, 947
BmiI	GGNNCC	4 cut(s)	112, 335, 735, 948
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	497, 569, 950
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 570
Bse1I	ACTGG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	497, 569, 950
BseLI	CCNNNNNNNGG	2 cut(s)	107, 570
BseMII	CTCAG	3 cut(s)	320, 670, 867
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	1 cut(s)	213
BseYI	CCCAGC	3 cut(s)	107, 841, 931
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	6 cut(s)	51, 598, 670, 734, 893, 994
BsiHKAI	GWGCWC	1 cut(s)	307
BslFI	GGGAC	3 cut(s)	124, 347, 960
BslI	CCNNNNNNNGG	2 cut(s)	107, 570
BsmAI	GTCTC	3 cut(s)	195, 410, 563
BsmFI	GGGAC	3 cut(s)	124, 347, 960
BsnI	GGCC	6 cut(s)	51, 598, 670, 734, 893, 994
Bso31I	GGTCTC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	262, 508, 524, 626, 919
BspACI	CCGC	4 cut(s)	45, 118, 894, 991
BspANI	GGCC	6 cut(s)	51, 598, 670, 734, 893, 994
BspCNI	CTCAG	3 cut(s)	319, 669, 868
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	112, 335, 735, 948
BspPI	GGATC	2 cut(s)	516, 519
BspTNI	GGTCTC	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	3 cut(s)	497, 569, 950
BssMI	GATC	5 cut(s)	262, 508, 524, 626, 919
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	2 cut(s)	497, 950
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	4 cut(s)	155, 379, 682, 820
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	194, 672, 830
BstDEI	CTNAG	4 cut(s)	306, 602, 656, 876
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	45, 369
BstKTI	GATC	5 cut(s)	265, 511, 527, 629, 922
BstMAI	GTCTC	3 cut(s)	195, 410, 563
BstMBI	GATC	5 cut(s)	262, 508, 524, 626, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	595, 838
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	6 cut(s)	51, 598, 670, 734, 893, 994
BtrI	CACGTC	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	375, 664
Cac8I	GCNNGC	3 cut(s)	194, 672, 830
CfoI	GCGC	2 cut(s)	45, 369
Cfr13I	GGNCC	4 cut(s)	111, 334, 733, 947
Csp6I	GTAC	1 cut(s)	678
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	7 cut(s)	167, 280, 329, 467, 691, 713, 917
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	4 cut(s)	306, 602, 656, 876
DpnI	GATC	5 cut(s)	264, 510, 526, 628, 921
DpnII	GATC	5 cut(s)	262, 508, 524, 626, 919
DraI	TTTAAA	1 cut(s)	274
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	49, 891
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	497, 950
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	3 cut(s)	111, 334, 947
Eco53kI	GAGCTC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	334, 947
EcoRI	GAATTC	2 cut(s)	10, 435
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	2 cut(s)	497, 950
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	2 cut(s)	497, 950
FaeI	CATG	7 cut(s)	170, 283, 332, 470, 694, 716, 920
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 472, 504
FaqI	GGGAC	3 cut(s)	124, 347, 960
FatI	CATG	7 cut(s)	166, 279, 328, 466, 690, 712, 916
FauNDI	CATATG	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	894, 992
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	894, 992
FspBI	CTAG	3 cut(s)	420, 552, 951
GlaI	GCGC	2 cut(s)	44, 368
GluI	GCNGC	2 cut(s)	894, 992
GsaI	CCCAGC	3 cut(s)	111, 845, 935
GsuI	CTGGAG	1 cut(s)	981
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	6 cut(s)	51, 598, 670, 734, 893, 994
HhaI	GCGC	2 cut(s)	45, 369
Hin1II	CATG	7 cut(s)	170, 283, 332, 470, 694, 716, 920
Hin6I	GCGC	2 cut(s)	43, 367
HinP1I	GCGC	2 cut(s)	43, 367
HindIII	AAGCTT	3 cut(s)	172, 347, 959
HinfI	GANTC	8 cut(s)	24, 92, 386, 473, 502, 574, 632, 754
HphI	GGTGA	3 cut(s)	19, 272, 815
Hpy166II	GTNNAC	3 cut(s)	151, 382, 472
Hpy188I	TCNGA	6 cut(s)	309, 324, 570, 626, 631, 786
Hpy188III	TCNNGA	4 cut(s)	341, 404, 506, 578
Hpy8I	GTNNAC	3 cut(s)	151, 382, 472
HpyAV	CCTTC	4 cut(s)	347, 410, 450, 588
HpyCH4III	ACNGT	4 cut(s)	155, 379, 682, 820
HpyCH4IV	ACGT	2 cut(s)	391, 1012
HpyCH4V	TGCA	5 cut(s)	245, 283, 293, 589, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	595, 838
HpyF3I	CTNAG	4 cut(s)	306, 602, 656, 876
HpySE526I	ACGT	2 cut(s)	391, 1012
Hsp92II	CATG	7 cut(s)	170, 283, 332, 470, 694, 716, 920
HspAI	GCGC	2 cut(s)	43, 367
Kzo9I	GATC	5 cut(s)	262, 508, 524, 626, 919
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	420, 552, 951
MaeII	ACGT	2 cut(s)	391, 1012
MaeIII	GTNAC	5 cut(s)	25, 233, 373, 387, 544
MalI	GATC	5 cut(s)	264, 510, 526, 628, 921
MboI	GATC	5 cut(s)	262, 508, 524, 626, 919
MboII	GAAGA	8 cut(s)	72, 73, 257, 435, 534, 593, 956, 967
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	7 cut(s)	10, 223, 435, 484, 584, 759, 882
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	5 cut(s)	33, 395, 467, 496, 763
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	4 cut(s)	273, 479, 515, 870
Msp20I	TGGCCA	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	595, 838
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	5 cut(s)	262, 508, 524, 626, 919
NlaIII	CATG	7 cut(s)	170, 283, 332, 470, 694, 716, 920
NlaIV	GGNNCC	4 cut(s)	112, 335, 735, 948
NmuCI	GTSAC	4 cut(s)	25, 373, 387, 544
NsiI	ATGCAT	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	92, 574, 632
PkrI	GCNGC	2 cut(s)	895, 993
PleI	GAGTC	5 cut(s)	32, 394, 467, 496, 762
PpsI	GAGTC	5 cut(s)	32, 394, 467, 496, 762
PpuMI	RGGWCCY	2 cut(s)	334, 947
Psp124BI	GAGCTC	1 cut(s)	307
Psp5II	RGGWCCY	2 cut(s)	334, 947
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	3 cut(s)	107, 841, 931
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	112, 335, 735, 948
PspPI	GGNCC	4 cut(s)	111, 334, 733, 947
PspPPI	RGGWCCY	2 cut(s)	334, 947
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	273, 479, 515, 870
SatI	GCNGC	2 cut(s)	894, 992
Sau3AI	GATC	5 cut(s)	262, 508, 524, 626, 919
Sau96I	GGNCC	4 cut(s)	111, 334, 733, 947
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	5 cut(s)	33, 395, 467, 496, 763
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	3 cut(s)	111, 334, 947
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	7 cut(s)	10, 223, 435, 484, 584, 759, 882
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	4 cut(s)	45, 118, 894, 991
SspMI	CTAG	3 cut(s)	420, 552, 951
SstI	GAGCTC	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	497, 950
TaaI	ACNGT	4 cut(s)	155, 379, 682, 820
TaiI	ACGT	2 cut(s)	394, 1015
TaqI	TCGA	4 cut(s)	14, 22, 268, 433
TasI	AATT	7 cut(s)	10, 223, 435, 484, 584, 759, 882
TatI	WGTACW	1 cut(s)	677
TauI	GCSGC	2 cut(s)	896, 994
TfiI	GAWTC	3 cut(s)	92, 574, 632
Tru1I	TTAA	4 cut(s)	273, 479, 515, 870
Tru9I	TTAA	4 cut(s)	273, 479, 515, 870
TscAI	CASTG	2 cut(s)	382, 664
TseFI	GTSAC	4 cut(s)	25, 373, 387, 544
Tsp45I	GTSAC	4 cut(s)	25, 373, 387, 544
TspDTI	ATGAA	5 cut(s)	72, 624, 679, 783, 822
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	382, 664
VpaK11BI	GGWCC	3 cut(s)	111, 334, 947
XapI	RAATTY	5 cut(s)	10, 223, 435, 484, 759
XmaJI	CCTAGG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	3 cut(s)	420, 552, 951
ZrmI	AGTACT	1 cut(s)	679
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.