Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

77614084 .. 77616454

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG600700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCGAAGCCCAGGGTCACCATCACCCTCGGTCGCTCTGGTCAGGTTGTGGAGAGGGGAGGGACATCAGACTCTGTAAACATGCGTGGCGAAAGAGGTATGGTTTCGGGAGGTAAACGATCAATGAGAGACAGGCTTGGGAGTAATGCTCATGGAAAGCGGCAACGAGGAGATGGAAATGGAATAAAATGGAGAGGGGGTGACAATACATTACATGATTCACGAATCAGTCGAAATGACCTCAGATTGAAACTGTTGCGCAAAAGATCATTTAAGCAAAATGGGGGAGTTGTTGCAGAACGCAAGCAGATGGTCCCGCGCCCAAAGCTTTCAAAACCTGCTCATTCTGCAGTGAGGTATCAGATGCCACCGCACAAGTCAGAAACAAATGAGAGTAGCTTCCTGAGGCAAATTCCTCCCAGGGAAACTGCAGCTGATTTGTATCATGTAAATCCACAGAGGAGCTTCAACTCTTCTCAAAGTAGAGAAGGATTCCGAGCTAGATCCCCCAATAACTTTGTGAACACTTCTTATGGGCCATCACCTCAAAGAAACTTTGGTGAGCTGCAGTCAGCATCATCCTTCAGGGCAGCTGACGCTCCTAGAGCTGGCCAGTTCCTGAGAAATGGTATGGTTGGTTCGTCTCAGCCAACAGATTCCTTCCTTTTCAGAACAAAATCTAACCCTCAAACTGCCAAGCCAGTTGGACAGCTTGTGCCAACAAATTACAGCATGCAAAAAGTCCCTTATATGGGGGAGGAACCTCTAAGTGTTGCTAGTTTATTGCATAGACTTGGTTTGGGCAAATATGCTATTATTTTCCAGGCTGAAGAAGGGCCAAGGAAAAAGATTCTTCTTGCGCTTTTGGCCCGCGGTAAACGACCGCCACCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

298

Amino Acids

33.03

Weight (kDa)

11.41

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	346
AccII	CGCG	2 cut(s)	319, 873
AciI	CCGC	6 cut(s)	160, 317, 371, 871, 873, 884
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	568, 849
AfiI	CCNNNNNNNGG	3 cut(s)	608, 751, 752
AgsI	TTSAA	3 cut(s)	250, 333, 469
AjnI	CCWGG	3 cut(s)	11, 419, 822
AluBI	AGCT	9 cut(s)	328, 399, 434, 465, 500, 565, 593, 608, 712
AluI	AGCT	9 cut(s)	328, 399, 434, 465, 500, 565, 593, 608, 712
Alw26I	GTCTC	2 cut(s)	123, 648
AlwI	GGATC	1 cut(s)	498
AlwNI	CAGNNNCTG	2 cut(s)	74, 619
AoxI	GGCC	4 cut(s)	536, 610, 836, 867
ApeKI	GCWGC	3 cut(s)	431, 565, 590
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	3 cut(s)	261, 321, 862
AspS9I	GGNCC	4 cut(s)	313, 536, 836, 868
AsuHPI	GGTGA	5 cut(s)	10, 16, 212, 534, 572
AvaII	GGWCC	1 cut(s)	313
AxyI	CCTNAGG	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	443, 552, 602
BccI	CCATC	4 cut(s)	29, 167, 304, 547
BciT130I	CCWGG	3 cut(s)	13, 421, 824
BcoDI	GTCTC	2 cut(s)	123, 648
BfaI	CTAG	3 cut(s)	501, 603, 777
BfmI	CTRYAG	3 cut(s)	348, 429, 566
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	161, 432, 566, 591
BlsI	GCNGC	4 cut(s)	162, 433, 567, 592
Bme1390I	CCNGG	3 cut(s)	13, 421, 824
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	313, 536, 836, 868
BmiI	GGNNCC	2 cut(s)	315, 762
BmrFI	CCNGG	3 cut(s)	13, 421, 824
BmsI	GCATC	2 cut(s)	354, 584
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	7 cut(s)	11, 12, 28, 419, 420, 839, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 751, 752
Bse1I	ACTGG	2 cut(s)	613, 701
Bse21I	CCTNAGG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	13, 421, 824
BseDI	CCNNGG	7 cut(s)	11, 12, 28, 419, 420, 839, 871
BseGI	GGATG	1 cut(s)	578
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	608, 751, 752
BseMII	CTCAG	4 cut(s)	256, 395, 611, 659
BseNI	ACTGG	2 cut(s)	613, 701
BseRI	GAGGAG	2 cut(s)	183, 475
BseXI	GCAGC	3 cut(s)	443, 552, 602
Bsh1236I	CGCG	2 cut(s)	319, 873
Bsh1285I	CGRYCG	2 cut(s)	34, 884
BshFI	GGCC	4 cut(s)	538, 612, 838, 869
BsiEI	CGRYCG	2 cut(s)	34, 884
BslFI	GGGAC	3 cut(s)	76, 299, 728
BslI	CCNNNNNNNGG	3 cut(s)	608, 751, 752
BsmAI	GTCTC	2 cut(s)	123, 648
BsmBI	CGTCTC	1 cut(s)	648
BsmFI	GGGAC	3 cut(s)	76, 299, 728
BsnI	GGCC	4 cut(s)	538, 612, 838, 869
Bsp143I	GATC	3 cut(s)	119, 266, 503
BspACI	CCGC	6 cut(s)	160, 317, 371, 871, 873, 884
BspANI	GGCC	4 cut(s)	538, 612, 838, 869
BspCNI	CTCAG	4 cut(s)	255, 396, 612, 658
BspFNI	CGCG	2 cut(s)	319, 873
BspLI	GGNNCC	2 cut(s)	315, 762
BspMAI	CTGCAG	3 cut(s)	352, 433, 570
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	613, 701
BssECI	CCNNGG	7 cut(s)	11, 12, 28, 419, 420, 839, 871
BssMI	GATC	3 cut(s)	119, 266, 503
BssT1I	CCWWGG	1 cut(s)	839
Bst2UI	CCWGG	3 cut(s)	13, 421, 824
Bst4CI	ACNGT	2 cut(s)	255, 894
Bst6I	CTCTTC	1 cut(s)	478
BstC8I	GCNNGC	4 cut(s)	305, 610, 734, 871
BstDEI	CTNAG	5 cut(s)	242, 404, 620, 645, 767
BstDSI	CCRYGG	1 cut(s)	871
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	2 cut(s)	319, 873
BstHHI	GCGC	3 cut(s)	261, 321, 862
BstKTI	GATC	3 cut(s)	122, 269, 506
BstMAI	GTCTC	2 cut(s)	123, 648
BstMBI	GATC	3 cut(s)	119, 266, 503
BstMCI	CGRYCG	2 cut(s)	34, 884
BstMWI	GCNNNNNNNGC	5 cut(s)	325, 347, 596, 605, 866
BstNI	CCWGG	3 cut(s)	13, 421, 824
BstNSI	RCATGY	2 cut(s)	85, 736
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	11, 419, 822
BstSFI	CTRYAG	3 cut(s)	348, 429, 566
BstUI	CGCG	2 cut(s)	319, 873
BstV1I	GCAGC	3 cut(s)	443, 552, 602
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	404
BsuRI	GGCC	4 cut(s)	538, 612, 838, 869
BtgI	CCRYGG	1 cut(s)	871
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	4 cut(s)	305, 610, 734, 871
CaiI	CAGNNNCTG	2 cut(s)	74, 619
CfoI	GCGC	3 cut(s)	261, 321, 862
Cfr13I	GGNCC	4 cut(s)	313, 536, 836, 868
Cfr42I	CCGCGG	1 cut(s)	874
CseI	GACGC	1 cut(s)	605
CviAII	CATG	5 cut(s)	82, 152, 215, 446, 733
DdeI	CTNAG	5 cut(s)	242, 404, 620, 645, 767
DpnI	GATC	3 cut(s)	121, 268, 505
DpnII	GATC	3 cut(s)	119, 266, 503
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	568, 849
Eco81I	CCTNAGG	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	11, 419, 822
EcoT14I	CCWWGG	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	5 cut(s)	85, 155, 218, 449, 736
FaqI	GGGAC	3 cut(s)	76, 299, 728
FatI	CATG	5 cut(s)	81, 151, 214, 445, 732
FauI	CCCGC	2 cut(s)	324, 878
Fnu4HI	GCNGC	4 cut(s)	161, 432, 566, 591
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	4 cut(s)	161, 432, 566, 591
FspBI	CTAG	3 cut(s)	501, 603, 777
FspI	TGCGCA	1 cut(s)	260
GlaI	GCGC	3 cut(s)	260, 320, 861
GluI	GCNGC	4 cut(s)	161, 432, 566, 591
HaeIII	GGCC	4 cut(s)	538, 612, 838, 869
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	3 cut(s)	261, 321, 862
Hin1II	CATG	5 cut(s)	85, 155, 218, 449, 736
Hin6I	GCGC	3 cut(s)	259, 319, 860
HinP1I	GCGC	3 cut(s)	259, 319, 860
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	6 cut(s)	71, 218, 225, 492, 656, 850
HphI	GGTGA	5 cut(s)	10, 16, 212, 534, 572
Hpy166II	GTNNAC	4 cut(s)	79, 116, 523, 878
Hpy188I	TCNGA	6 cut(s)	70, 245, 363, 382, 497, 671
Hpy188III	TCNNGA	4 cut(s)	108, 222, 403, 619
Hpy8I	GTNNAC	4 cut(s)	79, 116, 523, 878
HpyAV	CCTTC	4 cut(s)	482, 592, 670, 827
HpyCH4III	ACNGT	2 cut(s)	255, 894
HpyCH4V	TGCA	6 cut(s)	296, 350, 431, 568, 736, 787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	325, 347, 596, 605, 866
HpyF3I	CTNAG	5 cut(s)	242, 404, 620, 645, 767
Hsp92II	CATG	5 cut(s)	85, 155, 218, 449, 736
HspAI	GCGC	3 cut(s)	259, 319, 860
KspI	CCGCGG	1 cut(s)	874
Kzo9I	GATC	3 cut(s)	119, 266, 503
LmnI	GCTCC	2 cut(s)	462, 604
Lsp1109I	GCAGC	3 cut(s)	443, 552, 602
LweI	GCATC	2 cut(s)	354, 584
MaeI	CTAG	3 cut(s)	501, 603, 777
MaeIII	GTNAC	2 cut(s)	16, 200
MalI	GATC	3 cut(s)	121, 268, 505
MboI	GATC	3 cut(s)	119, 266, 503
MboII	GAAGA	3 cut(s)	465, 842, 845
MflI	RGATCY	1 cut(s)	503
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	2 cut(s)	411, 724
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	685
Mox20I	TGGCCA	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	612
MspA1I	CMGCKG	3 cut(s)	434, 593, 873
MspR9I	CCNGG	3 cut(s)	13, 421, 824
MvaI	CCWGG	3 cut(s)	13, 421, 824
MvnI	CGCG	2 cut(s)	319, 873
MwoI	GCNNNNNNNGC	5 cut(s)	325, 347, 596, 605, 866
NdeII	GATC	3 cut(s)	119, 266, 503
NlaIII	CATG	5 cut(s)	85, 155, 218, 449, 736
NlaIV	GGNNCC	2 cut(s)	315, 762
NmuCI	GTSAC	2 cut(s)	16, 200
NsbI	TGCGCA	1 cut(s)	260
NspI	RCATGY	2 cut(s)	85, 736
PaeI	GCATGC	1 cut(s)	736
PasI	CCCWGGG	2 cut(s)	12, 420
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	5 cut(s)	218, 225, 492, 656, 850
PkrI	GCNGC	4 cut(s)	162, 433, 567, 592
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	3 cut(s)	11, 419, 822
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	3 cut(s)	11, 419, 822
PspN4I	GGNNCC	2 cut(s)	315, 762
PspPI	GGNCC	4 cut(s)	313, 536, 836, 868
PsrI	GAACNNNNNNTAC	2 cut(s)	622, 654
PstI	CTGCAG	3 cut(s)	352, 433, 570
PstNI	CAGNNNCTG	2 cut(s)	74, 619
PsuI	RGATCY	1 cut(s)	503
PvuII	CAGCTG	2 cut(s)	434, 593
SacII	CCGCGG	1 cut(s)	874
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	161, 432, 566, 591
Sau3AI	GATC	3 cut(s)	119, 266, 503
Sau96I	GGNCC	4 cut(s)	313, 536, 836, 868
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	13, 421, 824
SfaNI	GCATC	2 cut(s)	354, 584
SfcI	CTRYAG	3 cut(s)	348, 429, 566
Sfr303I	CCGCGG	1 cut(s)	874
SgrBI	CCGCGG	1 cut(s)	874
SinI	GGWCC	1 cut(s)	313
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	2 cut(s)	411, 724
SsiI	CCGC	6 cut(s)	160, 317, 371, 871, 873, 884
SspMI	CTAG	3 cut(s)	501, 603, 777
StyD4I	CCNGG	3 cut(s)	11, 419, 822
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	255, 894
TaqI	TCGA	2 cut(s)	5, 232
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	411, 724
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	5 cut(s)	218, 225, 492, 656, 850
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	16, 200
TseI	GCWGC	3 cut(s)	431, 565, 590
Tsp45I	GTSAC	2 cut(s)	16, 200
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	2 cut(s)	85, 736
XspI	CTAG	3 cut(s)	501, 603, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.