Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Reverse (-)

2420822 .. 2423157

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCGAATTCGAGGGTTACCATCACCCTCGGTCGCTCTGGCCAGGTTGTGGAGAGAGGAGGATTTGTATCCAACTCTGGGAAAATGCGTGGTGATAGTGGGATGGTTTCTGGAAGTAAACGAATGGCAGACAGGCTTGGGAGTAATGCTCATGGTTTTTCGTTTTCTTCGGGCAAGCGATTGAAATTGTTGCGTAAAAGATTATTTAAGAAGCAAATTGGCGGAGTTGTTGAAGAGCACAAGCAGATGGACCCTCGTGCAAAGCTTTCAAAACCTGTTCATCCTTCACTGAAATACCAGGTGTTGCAGCATAATTCAGAAACAAATGGAAGTAACACCATGAGGCAGGTTCCTCCCAGAGAAAGTCCCGCTGATCTATACCAGGTAAATTCTCGAAGAAACTTCTACTCTTCTCCAACTACAGATGGATTCAGAGGTAGATCCCCACCAAGAGAGCTGCACCCACCATCATCATTTAGGCCAGTTGACGCTTCTAGAGCTGGCCAGTTCCCGAGAAATGGTATGGTTGGTTCTTCTCAGCCAACAGACTCCTTTATTTTCACAATGAAAGCTAACCCTCAAGCTGCCAGGCCAATAGCACAGTTTGCACCACCAAGAGCCAGTGTGCAGAGAAGTTCACAAATGGTACTACCTTTTGGCGATTGTACCATTTTAGCTTCAATTTTAGGAAATCTGGTCTTGTATTGCTACTTCAAATTTGATGAGTTTATCTCTGCGTTTGTACAGGTGGATGAAACTCTAACTGTTGCTGGCTTGTTGCATAGCCTTGGTTTGGGAAAATATGCCATTATTTTCCAGGCTGAAGAAGTGGACATGACTGCTTTGAAGCAGATGGGGGATAAGGATCTCAAAGAGCTGGGCATACCGATGAGGTTGCTTAATATTCAGGGACCAAGAAAAAAAATCCTTCTTGCACTTTTGCCCCGTACTAAACGGCAACCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

323

Amino Acids

35.62

Weight (kDa)

10.46

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	2 cut(s)	222, 369
AclWI	GGATC	2 cut(s)	435, 873
AcoI	YGGCCR	2 cut(s)	40, 502
AcsI	RAATTY	3 cut(s)	7, 388, 716
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	4 cut(s)	648, 667, 744, 949
AfiI	CCNNNNNNNGG	4 cut(s)	49, 78, 518, 793
AgsI	TTSAA	6 cut(s)	184, 233, 270, 681, 715, 847
AjnI	CCWGG	5 cut(s)	42, 297, 381, 587, 816
AluBI	AGCT	7 cut(s)	265, 457, 500, 572, 584, 677, 877
AluI	AGCT	7 cut(s)	265, 457, 500, 572, 584, 677, 877
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	435, 873
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	40, 479, 502, 590
ApeKI	GCWGC	3 cut(s)	307, 457, 584
ApoI	RAATTY	3 cut(s)	7, 388, 716
AspS9I	GGNCC	2 cut(s)	250, 911
AsuHPI	GGTGA	2 cut(s)	16, 104
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	250, 911
BalI	TGGCCA	2 cut(s)	42, 504
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	319, 444, 571
BccI	CCATC	6 cut(s)	29, 97, 241, 419, 475, 847
BcgI	CGANNNNNNTGC	2 cut(s)	877, 911
BciT130I	CCWGG	5 cut(s)	44, 299, 383, 589, 818
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	3 cut(s)	308, 458, 585
BlsI	GCNGC	3 cut(s)	309, 459, 586
Bme1390I	CCNGG	5 cut(s)	44, 299, 383, 589, 818
Bme18I	GGWCC	2 cut(s)	250, 911
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	250, 911
BmiI	GGNNCC	3 cut(s)	252, 351, 912
BmrFI	CCNGG	5 cut(s)	44, 299, 383, 589, 818
BplI	GAGNNNNNCTC	4 cut(s)	133, 165, 716, 748
BpuEI	CTTGAG	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	67, 864
BsaJI	CCNNGG	2 cut(s)	28, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 78, 518, 793
Bse1I	ACTGG	3 cut(s)	482, 505, 621
Bse8I	GATNNNNATC	2 cut(s)	67, 864
BseBI	CCWGG	5 cut(s)	44, 299, 383, 589, 818
BseDI	CCNNGG	2 cut(s)	28, 787
BseGI	GGATG	3 cut(s)	108, 280, 757
BseJI	GATNNNNATC	2 cut(s)	67, 864
BseLI	CCNNNNNNNGG	4 cut(s)	49, 78, 518, 793
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	3 cut(s)	482, 505, 621
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	319, 444, 571
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	2 cut(s)	443, 647
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	4 cut(s)	42, 481, 504, 592
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	351, 924
BslI	CCNNNNNNNGG	4 cut(s)	49, 78, 518, 793
BsmFI	GGGAC	2 cut(s)	351, 924
BsnI	GGCC	4 cut(s)	42, 481, 504, 592
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	742
Bsp143I	GATC	3 cut(s)	373, 440, 865
BspACI	CCGC	2 cut(s)	222, 369
BspANI	GGCC	4 cut(s)	42, 481, 504, 592
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	252, 351, 912
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	435, 873
BspQI	GCTCTTC	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	3 cut(s)	482, 505, 621
BssECI	CCNNGG	2 cut(s)	28, 787
BssMI	GATC	3 cut(s)	373, 440, 865
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	787
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	5 cut(s)	44, 299, 383, 589, 818
Bst4CI	ACNGT	2 cut(s)	603, 766
Bst6I	CTCTTC	2 cut(s)	228, 415
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	742
BstC8I	GCNNGC	3 cut(s)	176, 502, 772
BstDEI	CTNAG	1 cut(s)	537
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	108, 280, 757
BstKTI	GATC	3 cut(s)	376, 443, 868
BstMBI	GATC	3 cut(s)	373, 440, 865
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 605
BstNI	CCWGG	5 cut(s)	44, 299, 383, 589, 818
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	42, 297, 381, 587, 816
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	319, 444, 571
BstX2I	RGATCY	2 cut(s)	440, 865
BstYI	RGATCY	2 cut(s)	440, 865
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	42, 481, 504, 592
BtsCI	GGATG	3 cut(s)	108, 280, 757
BtsIMutI	CAGTG	2 cut(s)	287, 628
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	176, 502, 772
Cfr13I	GGNCC	2 cut(s)	250, 911
CseI	GACGC	1 cut(s)	497
CsiI	ACCWGGT	2 cut(s)	297, 381
Csp6I	GTAC	4 cut(s)	647, 666, 743, 948
CviAII	CATG	3 cut(s)	152, 340, 835
CviQI	GTAC	4 cut(s)	647, 666, 743, 948
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	3 cut(s)	375, 442, 867
DpnII	GATC	3 cut(s)	373, 440, 865
EaeI	YGGCCR	2 cut(s)	40, 502
Eam1104I	CTCTTC	2 cut(s)	228, 415
EarI	CTCTTC	2 cut(s)	228, 415
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	787
Eco47I	GGWCC	2 cut(s)	250, 911
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	511
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	5 cut(s)	42, 297, 381, 587, 816
EcoT14I	CCWWGG	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	3 cut(s)	155, 343, 838
FaqI	GGGAC	2 cut(s)	351, 924
FatI	CATG	3 cut(s)	151, 339, 834
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	308, 458, 585
FokI	GGATG	3 cut(s)	115, 267, 764
Fsp4HI	GCNGC	3 cut(s)	308, 458, 585
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	3 cut(s)	308, 458, 585
GsaI	CCCAGC	1 cut(s)	881
HaeIII	GGCC	4 cut(s)	42, 481, 504, 592
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	155, 343, 838
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	429, 548
HphI	GGTGA	2 cut(s)	16, 104
Hpy166II	GTNNAC	4 cut(s)	119, 487, 638, 832
Hpy188I	TCNGA	2 cut(s)	319, 434
Hpy188III	TCNNGA	4 cut(s)	111, 393, 495, 511
Hpy8I	GTNNAC	4 cut(s)	119, 487, 638, 832
HpyAV	CCTTC	2 cut(s)	294, 938
HpyCH4III	ACNGT	2 cut(s)	603, 766
HpyCH4V	TGCA	7 cut(s)	260, 307, 460, 608, 628, 781, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 605
HpyF3I	CTNAG	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	155, 343, 838
Kzo9I	GATC	3 cut(s)	373, 440, 865
LguI	GCTCTTC	1 cut(s)	228
Lsp1109I	GCAGC	3 cut(s)	319, 444, 571
MabI	ACCWGGT	2 cut(s)	297, 381
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	16, 332
MalI	GATC	3 cut(s)	375, 442, 867
MboI	GATC	3 cut(s)	373, 440, 865
MboII	GAAGA	6 cut(s)	159, 245, 402, 408, 525, 836
MflI	RGATCY	2 cut(s)	440, 865
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	2 cut(s)	42, 504
MluCI	AATT	7 cut(s)	7, 185, 216, 313, 388, 681, 716
MluNI	TGGCCA	2 cut(s)	42, 504
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	96, 440
Mox20I	TGGCCA	2 cut(s)	42, 504
MscI	TGGCCA	2 cut(s)	42, 504
MseI	TTAA	2 cut(s)	207, 900
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	2 cut(s)	42, 504
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	5 cut(s)	44, 299, 383, 589, 818
MvaI	CCWGG	5 cut(s)	44, 299, 383, 589, 818
MwoI	GCNNNNNNNGC	2 cut(s)	497, 605
NdeII	GATC	3 cut(s)	373, 440, 865
NlaIII	CATG	3 cut(s)	155, 343, 838
NlaIV	GGNNCC	3 cut(s)	252, 351, 912
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	309, 459, 586
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp6I	CCWGG	5 cut(s)	42, 297, 381, 587, 816
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	5 cut(s)	42, 297, 381, 587, 816
PspN4I	GGNNCC	3 cut(s)	252, 351, 912
PspPI	GGNCC	2 cut(s)	250, 911
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
PsuI	RGATCY	2 cut(s)	440, 865
RsaI	GTAC	4 cut(s)	648, 667, 744, 949
RsaNI	GTAC	4 cut(s)	647, 666, 743, 948
RseI	CAYNNNNRTG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	207, 900
SatI	GCNGC	3 cut(s)	308, 458, 585
Sau3AI	GATC	3 cut(s)	373, 440, 865
Sau96I	GGNCC	2 cut(s)	250, 911
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	44, 299, 383, 589, 818
SduI	GDGCHC	1 cut(s)	240
SexAI	ACCWGGT	2 cut(s)	297, 381
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	250, 911
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	7 cut(s)	7, 185, 216, 313, 388, 681, 716
SsiI	CCGC	2 cut(s)	222, 369
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	5 cut(s)	42, 297, 381, 587, 816
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	2 cut(s)	603, 766
TaqI	TCGA	3 cut(s)	5, 11, 394
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	7 cut(s)	7, 185, 216, 313, 388, 681, 716
TatI	WGTACW	1 cut(s)	742
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	207, 900
Tru9I	TTAA	2 cut(s)	207, 900
TscAI	CASTG	2 cut(s)	294, 628
TseI	GCWGC	3 cut(s)	307, 457, 584
TspDTI	ATGAA	3 cut(s)	269, 581, 768
TspRI	CASTG	2 cut(s)	294, 628
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	250, 911
XapI	RAATTY	3 cut(s)	7, 388, 716
XbaI	TCTAGA	1 cut(s)	494
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.