Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8479667.1

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1849

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8479667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 793 bp

gcaacgaggagatggaataaattggagagggggtgacaatacattacatgattcacgaatcagtcgaaatgacctcagattgaaactgttgcgcaaaagatcatttaagcaaaatgggggagttgttgcagaacgcaagcagatggtcccgcgcccaaagctgtcaaaacctgctcattctgcagtgaggtatcagatgccacagcacaaatcagaaacaaatgagagtagcttcctgaggcaaattcctcccagggaaactgcagctgatttgtatcatgtaaatccacagaggaactacaactcttctcaaagtagagaaggattccgagctagatcccccgataactttgtgaacacttcttatgggccatcacctcaaagaaactttggtgagctgcagtcagcatcatccttcagggcagctgacgctcctagagctggccatttcatgagaaatggtatggttggttcgtctcagccaacagattccttccttttcagaacgaaatctaaccctcaaactgccaagccagttggacagcttgtgccaacaagttacagcatgcaaaaagtcccttatatgggggaggaacctctaagtgttgctagtttattgcatagacttggtttgggaaaatatgctattattttccaggctgaagaagtggacatgggtactctgaagcagatgggggataaggaccttaaagagctgggtataccaatggggccaaggaaaaagattcttcttgcgcttttggcccgcggtaaacgaccgccaccaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

263

Amino Acids

29.44

Weight (kDa)

10.5

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	2 cut(s)	152, 769
AciI	CCGC	4 cut(s)	150, 767, 769, 780
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	3 cut(s)	401, 682, 705
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	3 cut(s)	441, 584, 585
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	252, 655
AluBI	AGCT	9 cut(s)	161, 232, 267, 333, 398, 426, 441, 545, 716
AluI	AGCT	9 cut(s)	161, 232, 267, 333, 398, 426, 441, 545, 716
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	4 cut(s)	369, 443, 732, 763
ApeKI	GCWGC	3 cut(s)	264, 398, 423
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	3 cut(s)	94, 154, 758
AspS9I	GGNCC	5 cut(s)	146, 369, 704, 732, 764
AsuHPI	GGTGA	3 cut(s)	45, 367, 405
AvaII	GGWCC	2 cut(s)	146, 704
AxyI	CCTNAGG	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	276, 385, 435
BccI	CCATC	4 cut(s)	6, 137, 380, 686
BciT130I	CCWGG	2 cut(s)	254, 657
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	3 cut(s)	334, 436, 610
BfmI	CTRYAG	3 cut(s)	181, 262, 399
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	265, 399, 424
BlsI	GCNGC	3 cut(s)	266, 400, 425
Bme1390I	CCNGG	2 cut(s)	254, 657
Bme18I	GGWCC	2 cut(s)	146, 704
BmgT120I	GGNCC	5 cut(s)	146, 369, 704, 732, 764
BmiI	GGNNCC	3 cut(s)	148, 595, 733
BmrFI	CCNGG	2 cut(s)	254, 657
BmsI	GCATC	2 cut(s)	187, 417
BsaBI	GATNNNNATC	1 cut(s)	274
BsaJI	CCNNGG	4 cut(s)	252, 253, 735, 767
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 584, 585
Bse1I	ACTGG	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	254, 657
BseDI	CCNNGG	4 cut(s)	252, 253, 735, 767
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	441, 584, 585
BseMII	CTCAG	3 cut(s)	89, 228, 492
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	276, 385, 435
BseYI	CCCAGC	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	152, 769
Bsh1285I	CGRYCG	1 cut(s)	780
BshFI	GGCC	4 cut(s)	371, 445, 734, 765
BsiEI	CGRYCG	1 cut(s)	780
BslFI	GGGAC	2 cut(s)	132, 561
BslI	CCNNNNNNNGG	3 cut(s)	441, 584, 585
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	132, 561
BsnI	GGCC	4 cut(s)	371, 445, 734, 765
Bsp143I	GATC	2 cut(s)	99, 336
BspACI	CCGC	4 cut(s)	150, 767, 769, 780
BspANI	GGCC	4 cut(s)	371, 445, 734, 765
BspCNI	CTCAG	3 cut(s)	88, 229, 491
BspFNI	CGCG	2 cut(s)	152, 769
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	148, 595, 733
BspMAI	CTGCAG	3 cut(s)	185, 266, 403
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	4 cut(s)	252, 253, 735, 767
BssMI	GATC	2 cut(s)	99, 336
BssNAI	GTATAC	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	735
Bst1107I	GTATAC	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	254, 657
Bst4CI	ACNGT	2 cut(s)	88, 790
Bst6I	CTCTTC	1 cut(s)	311
BstC8I	GCNNGC	4 cut(s)	138, 443, 567, 767
BstDEI	CTNAG	4 cut(s)	75, 237, 478, 600
BstDSI	CCRYGG	1 cut(s)	767
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	2 cut(s)	152, 769
BstHHI	GCGC	3 cut(s)	94, 154, 758
BstKTI	GATC	2 cut(s)	102, 339
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	2 cut(s)	99, 336
BstMCI	CGRYCG	1 cut(s)	780
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 180, 429, 438, 762
BstNI	CCWGG	2 cut(s)	254, 657
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	252, 655
BstSFI	CTRYAG	3 cut(s)	181, 262, 399
BstUI	CGCG	2 cut(s)	152, 769
BstV1I	GCAGC	3 cut(s)	276, 385, 435
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BstZ17I	GTATAC	1 cut(s)	723
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	371, 445, 734, 765
BtgI	CCRYGG	1 cut(s)	767
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	4 cut(s)	138, 443, 567, 767
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	3 cut(s)	94, 154, 758
Cfr13I	GGNCC	5 cut(s)	146, 369, 704, 732, 764
Cfr42I	CCGCGG	1 cut(s)	770
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	5 cut(s)	48, 279, 452, 566, 674
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	4 cut(s)	75, 237, 478, 600
DpnI	GATC	2 cut(s)	101, 338
DpnII	GATC	2 cut(s)	99, 336
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	146, 704
Eco57I	CTGAAG	3 cut(s)	401, 682, 705
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	252, 655
EcoT14I	CCWWGG	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	735
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	5 cut(s)	51, 282, 455, 569, 677
FaqI	GGGAC	2 cut(s)	132, 561
FatI	CATG	5 cut(s)	47, 278, 451, 565, 673
FauI	CCCGC	2 cut(s)	157, 774
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	3 cut(s)	265, 399, 424
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	265, 399, 424
FspBI	CTAG	3 cut(s)	334, 436, 610
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	3 cut(s)	93, 153, 757
GluI	GCNGC	3 cut(s)	265, 399, 424
GsaI	CCCAGC	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	371, 445, 734, 765
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	3 cut(s)	94, 154, 758
Hin1II	CATG	5 cut(s)	51, 282, 455, 569, 677
Hin6I	GCGC	3 cut(s)	92, 152, 756
HinP1I	GCGC	3 cut(s)	92, 152, 756
HinfI	GANTC	5 cut(s)	51, 58, 325, 489, 746
HphI	GGTGA	3 cut(s)	45, 367, 405
Hpy166II	GTNNAC	4 cut(s)	356, 671, 723, 774
Hpy188I	TCNGA	6 cut(s)	78, 196, 215, 330, 504, 685
Hpy188III	TCNNGA	3 cut(s)	55, 236, 452
Hpy8I	GTNNAC	4 cut(s)	356, 671, 723, 774
HpyAV	CCTTC	3 cut(s)	315, 425, 503
HpyCH4III	ACNGT	2 cut(s)	88, 790
HpyCH4V	TGCA	6 cut(s)	129, 183, 264, 401, 569, 620
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 180, 429, 438, 762
HpyF3I	CTNAG	4 cut(s)	75, 237, 478, 600
Hsp92II	CATG	5 cut(s)	51, 282, 455, 569, 677
HspAI	GCGC	3 cut(s)	92, 152, 756
KspI	CCGCGG	1 cut(s)	770
Kzo9I	GATC	2 cut(s)	99, 336
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	3 cut(s)	276, 385, 435
LweI	GCATC	2 cut(s)	187, 417
MaeI	CTAG	3 cut(s)	334, 436, 610
MaeIII	GTNAC	2 cut(s)	33, 558
MalI	GATC	2 cut(s)	101, 338
MboI	GATC	2 cut(s)	99, 336
MboII	GAAGA	3 cut(s)	298, 675, 741
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	2 cut(s)	20, 244
MluNI	TGGCCA	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	518
Mox20I	TGGCCA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	2 cut(s)	106, 709
Msp20I	TGGCCA	1 cut(s)	445
MspA1I	CMGCKG	3 cut(s)	267, 426, 769
MspR9I	CCNGG	2 cut(s)	254, 657
MvaI	CCWGG	2 cut(s)	254, 657
MvnI	CGCG	2 cut(s)	152, 769
MwoI	GCNNNNNNNGC	5 cut(s)	158, 180, 429, 438, 762
NdeII	GATC	2 cut(s)	99, 336
NlaIII	CATG	5 cut(s)	51, 282, 455, 569, 677
NlaIV	GGNNCC	3 cut(s)	148, 595, 733
NmuCI	GTSAC	1 cut(s)	33
NsbI	TGCGCA	1 cut(s)	93
NspI	RCATGY	1 cut(s)	569
PaeI	GCATGC	1 cut(s)	569
PagI	TCATGA	1 cut(s)	451
PasI	CCCWGGG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PfeI	GAWTC	5 cut(s)	51, 58, 325, 489, 746
PkrI	GCNGC	3 cut(s)	266, 400, 425
PpuMI	RGGWCCY	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	2 cut(s)	252, 655
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	252, 655
PspN4I	GGNNCC	3 cut(s)	148, 595, 733
PspPI	GGNCC	5 cut(s)	146, 369, 704, 732, 764
PspPPI	RGGWCCY	1 cut(s)	704
PsrI	GAACNNNNNNTAC	2 cut(s)	455, 487
PstI	CTGCAG	3 cut(s)	185, 266, 403
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	2 cut(s)	267, 426
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SacII	CCGCGG	1 cut(s)	770
SaqAI	TTAA	2 cut(s)	106, 709
SatI	GCNGC	3 cut(s)	265, 399, 424
Sau3AI	GATC	2 cut(s)	99, 336
Sau96I	GGNCC	5 cut(s)	146, 369, 704, 732, 764
ScrFI	CCNGG	2 cut(s)	254, 657
SfaNI	GCATC	2 cut(s)	187, 417
SfcI	CTRYAG	3 cut(s)	181, 262, 399
Sfr303I	CCGCGG	1 cut(s)	770
SgrBI	CCGCGG	1 cut(s)	770
SinI	GGWCC	2 cut(s)	146, 704
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	2 cut(s)	20, 244
SsiI	CCGC	4 cut(s)	150, 767, 769, 780
SspMI	CTAG	3 cut(s)	334, 436, 610
StyD4I	CCNGG	2 cut(s)	252, 655
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	2 cut(s)	88, 790
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	20, 244
TfiI	GAWTC	5 cut(s)	51, 58, 325, 489, 746
Tru1I	TTAA	2 cut(s)	106, 709
Tru9I	TTAA	2 cut(s)	106, 709
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	264, 398, 423
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	146, 704
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	722
XspI	CTAG	3 cut(s)	334, 436, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.