Rh4CG441800

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001403
Physical Location & Seq
Reverse (-)
67859436 .. 67863706
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG441800.1

Sequence Viewer

Length: 981 bp
ATGTCAGGGTCTTCCAGGGGCCAAGTCACCATTACGCTTGGGCGTGGCCAGGTAGTAAAGAGGGCTGTTTCGGGTTCGGGTGCTGAGTCTCTACCCACGGCCGGGACGAAACGGTCGGTTAGAGATAGGTTAGGGAGTAATGCTGATAGCTCTGTGTCGAATGGAAGTGTAGGCAACAGCAACAAACGCCAGCGAGGACATAGTGGTATGTCAAGTTTGAACTCCAATGGTTGTGATGATCCATGCATTGGTAAAGACGACCTCCGGTTTAAACTCATGCAAAAAAATGCATGTAGACGGGCTCAGAGTGATGATGATGATCAGAGGCATGGAGATCTTCGTGAGAAGCTGTCAAAGGCAGTTCAGCGTCCTGTTCCTAGCGTTGAATCACGGTCACGGCAGCACCTGCCTGAACCACAAGAGAGTGGTTTTTTCGGTCGAGTTCCTTCTACGAGAAGTGCAGATGTTTTCCCTCGAGGTCCTGCTACAAGAAGTGCAGATGATTTGCCTCATATGGACTCGTTGAGAAATTCTTATTCTCCTTGGACACTGGACCATTTACGACGAAGATCCCCAGAAAGAGTTCAAGTCACTTATAGGGGTCTCTCCCCTCAGAGGAACGTAGAAGACTTGCAGAGAAGGCCATTAAACAGGACATATGATGATGGCAGATCTGTTCCATACATGAACAAAGATGTTCTAGACGCTACAAGGCCTGCGAGTAATGCACCTTTCATGTCTAATACTGCACTGCCTCCTGGACCTGCAAAGCATATGGCAGCCGCCCCGCCCCATATGAACCAAGTTCCTCCACTGAGTAGCACTGTACAGAAACCTCCATATGTGGCTGATGAACAACAGACAGTAGATGGCTTGCTGCAACACCTCGGATTGGGAAAATATGCCATTATATTCAAGGCTGAGGAAGTATGTTTCTTGCTATATTTGTTTCTAGTATGTTATGTGTTCACATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

326

Amino Acids

35.99

Weight (kDa)

9.67

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 414
AasI GACNNNNNNGTC 1 cut(s) 112
AbsI CCTCGAGG 1 cut(s) 474
Acc36I ACCTGC 2 cut(s) 414, 772
AccB7I CCANNNNNTGG 1 cut(s) 248
AccI GTMKAC 1 cut(s) 295
AciI CCGC 2 cut(s) 783, 788
AclWI GGATC 2 cut(s) 233, 564
AcoI YGGCCR 2 cut(s) 46, 99
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 1 cut(s) 828
AfiI CCNNNNNNNGG 5 cut(s) 101, 102, 248, 615, 892
AgsI TTSAA 4 cut(s) 220, 386, 587, 916
AjnI CCWGG 3 cut(s) 14, 48, 757
AluBI AGCT 2 cut(s) 150, 349
AluI AGCT 2 cut(s) 150, 349
Alw26I GTCTC 2 cut(s) 93, 608
AlwI GGATC 2 cut(s) 233, 564
AlwNI CAGNNNCTG 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 5 cut(s) 19, 46, 99, 641, 713
ApeKI GCWGC 3 cut(s) 400, 779, 877
ApoI RAATTY 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 4 cut(s) 19, 479, 553, 761
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 3 cut(s) 479, 553, 761
BalI TGGCCA 1 cut(s) 48
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 2 cut(s) 3, 633
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 3 cut(s) 412, 791, 864
BccI CCATC 2 cut(s) 659, 863
BceAI ACGGC 2 cut(s) 114, 413
BciT130I CCWGG 3 cut(s) 16, 50, 759
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 93, 608
BfaI CTAG 3 cut(s) 378, 701, 953
BfuAI ACCTGC 2 cut(s) 414, 772
BglII AGATCT 2 cut(s) 334, 671
BisI GCNGC 4 cut(s) 401, 780, 783, 878
BlsI GCNGC 4 cut(s) 402, 781, 784, 879
Bme1390I CCNGG 4 cut(s) 16, 50, 103, 759
Bme18I GGWCC 3 cut(s) 479, 553, 761
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 4 cut(s) 19, 479, 553, 761
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 4 cut(s) 16, 50, 103, 759
BpiI GAAGAC 2 cut(s) 3, 633
Bpu10I CCTNAGC 1 cut(s) 921
BpuMI CCSGG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 4 cut(s) 15, 96, 542, 886
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 102, 248, 615, 892
Bse1I ACTGG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 3 cut(s) 16, 50, 759
BseDI CCNNGG 4 cut(s) 15, 96, 542, 886
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 5 cut(s) 101, 102, 248, 615, 892
BseMII CTCAG 5 cut(s) 75, 317, 626, 806, 912
BseNI ACTGG 1 cut(s) 555
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 3 cut(s) 412, 791, 864
BsgI GTGCAG 3 cut(s) 480, 516, 732
Bsh1285I CGRYCG 3 cut(s) 102, 116, 439
BshFI GGCC 5 cut(s) 21, 48, 101, 643, 715
BsiEI CGRYCG 3 cut(s) 102, 116, 439
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 102, 265
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 5 cut(s) 101, 102, 248, 615, 892
BsmAI GTCTC 2 cut(s) 93, 608
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 5 cut(s) 21, 48, 101, 643, 715
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 826
Bsp143I GATC 5 cut(s) 238, 319, 334, 569, 671
BspACI CCGC 2 cut(s) 783, 788
BspANI GGCC 5 cut(s) 21, 48, 101, 643, 715
BspCNI CTCAG 5 cut(s) 76, 316, 625, 807, 913
BspLI GGNNCC 1 cut(s) 20
BspMI ACCTGC 2 cut(s) 414, 772
BspPI GGATC 2 cut(s) 233, 564
BspTNI GGTCTC 1 cut(s) 608
BsrGI TGTACA 1 cut(s) 826
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 4 cut(s) 15, 96, 542, 886
BssMI GATC 5 cut(s) 238, 319, 334, 569, 671
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 3 cut(s) 16, 50, 759
Bst4CI ACNGT 4 cut(s) 114, 393, 826, 865
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 826
BstC8I GCNNGC 3 cut(s) 191, 717, 875
BstDEI CTNAG 5 cut(s) 84, 303, 612, 815, 921
BstDSI CCRYGG 1 cut(s) 96
BstKTI GATC 5 cut(s) 241, 322, 337, 572, 674
BstMAI GTCTC 2 cut(s) 93, 608
BstMBI GATC 5 cut(s) 238, 319, 334, 569, 671
BstMCI CGRYCG 3 cut(s) 102, 116, 439
BstMWI GCNNNNNNNGC 4 cut(s) 186, 406, 640, 725
BstNI CCWGG 3 cut(s) 16, 50, 759
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 4 cut(s) 14, 48, 101, 757
BstV1I GCAGC 3 cut(s) 412, 791, 864
BstV2I GAAGAC 2 cut(s) 3, 633
BstX2I RGATCY 3 cut(s) 334, 569, 671
BstYI RGATCY 3 cut(s) 334, 569, 671
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 5 cut(s) 21, 48, 101, 643, 715
BtgI CCRYGG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 4 cut(s) 548, 749, 812, 822
BveI ACCTGC 2 cut(s) 414, 772
Cac8I GCNNGC 3 cut(s) 191, 717, 875
CaiI CAGNNNCTG 1 cut(s) 406
Cfr13I GGNCC 4 cut(s) 19, 479, 553, 761
CseI GACGC 2 cut(s) 356, 713
Csp6I GTAC 1 cut(s) 827
CviAII CATG 6 cut(s) 243, 277, 291, 329, 685, 736
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 5 cut(s) 84, 303, 612, 815, 921
DpnI GATC 5 cut(s) 240, 321, 336, 571, 673
DpnII GATC 5 cut(s) 238, 319, 334, 569, 671
DraI TTTAAA 1 cut(s) 271
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 46, 99
EagI CGGCCG 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 715
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 3 cut(s) 479, 553, 761
Eco52I CGGCCG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 479
EcoRII CCWGG 3 cut(s) 14, 48, 757
EcoT14I CCWWGG 1 cut(s) 542
EcoT22I ATGCAT 2 cut(s) 248, 292
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 6 cut(s) 246, 280, 294, 332, 688, 739
FaqI GGGAC 1 cut(s) 118
FatI CATG 6 cut(s) 242, 276, 290, 328, 684, 735
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 5 cut(s) 513, 658, 774, 795, 841
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 401, 780, 783, 878
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 4 cut(s) 401, 780, 783, 878
FspBI CTAG 3 cut(s) 378, 701, 953
GluI GCNGC 4 cut(s) 401, 780, 783, 878
HaeIII GGCC 5 cut(s) 21, 48, 101, 643, 715
HapII CCGG 2 cut(s) 102, 265
HgaI GACGC 2 cut(s) 356, 713
Hin1II CATG 6 cut(s) 246, 280, 294, 332, 688, 739
HinfI GANTC 3 cut(s) 86, 386, 518
HpaII CCGG 2 cut(s) 102, 265
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 296, 969
Hpy188I TCNGA 4 cut(s) 306, 324, 615, 890
Hpy188III TCNNGA 2 cut(s) 341, 701
Hpy8I GTNNAC 2 cut(s) 296, 969
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 456, 633
HpyCH4III ACNGT 4 cut(s) 114, 393, 826, 865
HpyCH4IV ACGT 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 406, 640, 725
HpyF3I CTNAG 5 cut(s) 84, 303, 612, 815, 921
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 6 cut(s) 246, 280, 294, 332, 688, 739
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 238, 319, 334, 569, 671
Lsp1109I GCAGC 3 cut(s) 412, 791, 864
MaeI CTAG 3 cut(s) 378, 701, 953
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 3 cut(s) 25, 393, 589
MalI GATC 5 cut(s) 240, 321, 336, 571, 673
MboI GATC 5 cut(s) 238, 319, 334, 569, 671
MboII GAAGA 4 cut(s) 3, 329, 579, 638
MflI RGATCY 3 cut(s) 334, 569, 671
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 1 cut(s) 529
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 2 cut(s) 95, 512
Mox20I TGGCCA 1 cut(s) 48
Mph1103I ATGCAT 2 cut(s) 248, 292
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 270, 647, 979
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 2 cut(s) 102, 265
MspR9I CCNGG 4 cut(s) 16, 50, 103, 759
MssI GTTTAAAC 1 cut(s) 271
MvaI CCWGG 3 cut(s) 16, 50, 759
MwoI GCNNNNNNNGC 4 cut(s) 186, 406, 640, 725
NciI CCSGG 1 cut(s) 103
NdeI CATATG 5 cut(s) 513, 658, 774, 795, 841
NdeII GATC 5 cut(s) 238, 319, 334, 569, 671
NlaIII CATG 6 cut(s) 246, 280, 294, 332, 688, 739
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 3 cut(s) 25, 393, 589
NsiI ATGCAT 2 cut(s) 248, 292
NspI RCATGY 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 414
PceI AGGCCT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 4 cut(s) 402, 781, 784, 879
PleI GAGTC 2 cut(s) 94, 512
PmeI GTTTAAAC 1 cut(s) 271
PpsI GAGTC 2 cut(s) 94, 512
PpuMI RGGWCCY 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 3 cut(s) 14, 48, 757
PspGI CCWGG 3 cut(s) 14, 48, 757
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 4 cut(s) 19, 479, 553, 761
PspPPI RGGWCCY 1 cut(s) 479
PspXI VCTCGAGB 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 3 cut(s) 334, 569, 671
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
SaqAI TTAA 3 cut(s) 270, 647, 979
SatI GCNGC 4 cut(s) 401, 780, 783, 878
Sau3AI GATC 5 cut(s) 238, 319, 334, 569, 671
Sau96I GGNCC 4 cut(s) 19, 479, 553, 761
SchI GAGTC 2 cut(s) 95, 512
ScrFI CCNGG 4 cut(s) 16, 50, 103, 759
SduI GDGCHC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 3 cut(s) 479, 553, 761
SlaI CTCGAG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 1 cut(s) 529
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 2 cut(s) 783, 788
SspMI CTAG 3 cut(s) 378, 701, 953
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 4 cut(s) 14, 48, 101, 757
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 4 cut(s) 114, 393, 826, 865
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 158, 439, 475
TaqII GACCGA 1 cut(s) 425
TasI AATT 1 cut(s) 529
TatI WGTACW 1 cut(s) 826
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 270, 647, 979
Tru9I TTAA 3 cut(s) 270, 647, 979
TscAI CASTG 4 cut(s) 555, 756, 819, 829
TseFI GTSAC 3 cut(s) 25, 393, 589
TseI GCWGC 3 cut(s) 400, 779, 877
Tsp45I GTSAC 3 cut(s) 25, 393, 589
TspDTI ATGAA 4 cut(s) 701, 724, 812, 867
TspRI CASTG 4 cut(s) 555, 756, 819, 829
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 3 cut(s) 479, 553, 761
XapI RAATTY 1 cut(s) 529
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 378, 701, 953
Zsp2I ATGCAT 2 cut(s) 248, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.