Prupe.1G260800_v2.0.a1

SAM domain (Sterile alpha motif)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
26981150 .. 26985012
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G260800.1

Sequence Viewer

Length: 1023 bp
ATGTCAGGGACTTCGAGGGGCCAAGTTACCATTACGCTTGGGCGTGGTGGCCAGGTAGTGAAGAGGGCAGTTTCCGGGTCTGATGGTTCTTTATCTGATTCTCTGCCTGCAGCTGGGACCAAGCGGTCTGTTAGAGATAGGTTAGGAGGTAATGTAGATGGTGCTTTCTCGCATGGAAGCCTACACAACAGCAACAAACGCCAGCGAGGAGATTATGGTGTGTCAAGTTTGAACTCCAATGGTTTTGATGATGCGCGCATTGGTAAAGGTGACCTCCGATTTAAACTCATGCAAAAGAATGCGTTTAGACGAGCTCAGAGTGATGATGATCAGAGGCGTGGGGACCTTCGTGAGAAGCTTTCAAAGGCAGTTCAGCGACCTTCTACTGGCCTTGACCCACGGCAGCGCTTGCCCGAACTAAAGGAGACTGGTGCCATGGCTCGAATCCCTTCTACGAGAAGTGCAGATGATTTGCCGCATGTGGACTCGTTGAGAAATTCTTATTCCCCTTGGACACTGGACCATTTAAGACGAAGATCCCCAGATAGAGTTATAGTCACTTCTAGGGGCCTCTCCCCACAGAGGAATCCTGAAGAATTGCAGAGAAGGCCACTAAACAGGGCATTTGATGATGTCAGATCGGTTCCATATATGAGCAAAGATGTTCTAGATGCTACAAGGCCCGCAAATGCTGCTCCTTTCATGTCTAATCCTCCATTGCCTCCTGGATCTGTGAAGCCTGTGGCCCCACCTCCACCCCATTTGAGCCAACTTCCTCCATTGAGCAGCATTGTACAGAAAAGTTCATACGTGGGTGATGAACAACAGACTGTAGATGGCTTGCTACAGACGCTGGGGTTGGGAAAATATGCCATCATTTTTAAGGCAGAGGAAATTGATATGACTGCATTGAAGCAGATGGGAGAAAATGATCTCAAAGAGCTGGGAATACCTATGGGACCAAGGAAGAAGATTCTTCTTGCTCTCTTGCCCCGTTCCAAGCGGCCACCGGCGATACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

341

Amino Acids

37.24

Weight (kDa)

10.4

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AccB1I GGYRCC 1 cut(s) 431
AccII CGCG 1 cut(s) 256
AciI CCGC 4 cut(s) 124, 476, 684, 1003
AclWI GGATC 2 cut(s) 531, 736
AcoI YGGCCR 2 cut(s) 49, 1004
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 1 cut(s) 795
AfeI AGCGCT 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 113, 386, 582
AgsI TTSAA 3 cut(s) 232, 363, 913
AjnI CCWGG 2 cut(s) 51, 724
AluBI AGCT 4 cut(s) 113, 314, 358, 943
AluI AGCT 4 cut(s) 113, 314, 358, 943
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 531, 736
AlwNI CAGNNNCTG 1 cut(s) 853
Aor51HI AGCGCT 1 cut(s) 407
AoxI GGCC 8 cut(s) 19, 49, 388, 568, 608, 680, 744, 1004
ApeKI GCWGC 4 cut(s) 110, 403, 692, 786
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 448
AspLEI GCGC 3 cut(s) 256, 258, 408
AspS9I GGNCC 8 cut(s) 19, 117, 343, 520, 568, 681, 745, 959
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 281, 827
AvaII GGWCC 4 cut(s) 117, 343, 520, 959
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 4 cut(s) 122, 415, 679, 798
BccI CCATC 5 cut(s) 77, 152, 830, 881, 913
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 53, 726
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 2 cut(s) 564, 668
BfmI CTRYAG 3 cut(s) 108, 831, 845
BfoI RGCGCY 1 cut(s) 409
BisI GCNGC 6 cut(s) 111, 404, 476, 693, 787, 1004
BlsI GCNGC 6 cut(s) 112, 405, 477, 694, 788, 1005
Bme1390I CCNGG 3 cut(s) 53, 76, 726
Bme18I GGWCC 4 cut(s) 117, 343, 520, 959
BmgT120I GGNCC 8 cut(s) 19, 117, 343, 520, 568, 681, 745, 959
BmiI GGNNCC 8 cut(s) 20, 118, 344, 433, 569, 645, 747, 960
BmrFI CCNGG 3 cut(s) 53, 76, 726
BmsI GCATC 2 cut(s) 241, 661
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 4 cut(s) 398, 435, 509, 962
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 386, 582
Bse118I RCCGGY 1 cut(s) 1009
Bse1I ACTGG 3 cut(s) 391, 433, 522
Bse3DI GCAATG 1 cut(s) 716
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 2 cut(s) 53, 726
BseDI CCNNGG 4 cut(s) 398, 435, 509, 962
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 113, 386, 582
BseMI GCAATG 1 cut(s) 716
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 3 cut(s) 391, 433, 522
BsePI GCGCGC 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 122, 415, 679, 798
BseYI CCCAGC 3 cut(s) 113, 853, 943
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 8 cut(s) 21, 51, 390, 570, 610, 682, 746, 1006
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 75, 1010
BslFI GGGAC 4 cut(s) 22, 130, 356, 972
BslI CCNNNNNNNGG 3 cut(s) 113, 386, 582
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 4 cut(s) 22, 130, 356, 972
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 8 cut(s) 21, 51, 390, 570, 610, 682, 746, 1006
Bsp1286I GDGCHC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 5 cut(s) 328, 536, 638, 728, 931
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 124, 476, 684, 1003
BspANI GGCC 8 cut(s) 21, 51, 390, 570, 610, 682, 746, 1006
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 8 cut(s) 20, 118, 344, 433, 569, 645, 747, 960
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 2 cut(s) 531, 736
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 716
BsrFI RCCGGY 1 cut(s) 1009
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 3 cut(s) 391, 433, 522
BssAI RCCGGY 1 cut(s) 1009
BssECI CCNNGG 4 cut(s) 398, 435, 509, 962
BssHII GCGCGC 1 cut(s) 254
BssMI GATC 5 cut(s) 328, 536, 638, 728, 931
BssT1I CCWWGG 3 cut(s) 435, 509, 962
Bst2UI CCWGG 2 cut(s) 53, 726
Bst4CI ACNGT 1 cut(s) 832
Bst6I CTCTTC 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 409, 692
BstAUI TGTACA 1 cut(s) 793
BstBAI YACGTR 1 cut(s) 811
BstC8I GCNNGC 6 cut(s) 108, 203, 256, 410, 684, 842
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 2 cut(s) 398, 435
BstEII GGTNACC 1 cut(s) 269
BstFNI CGCG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 3 cut(s) 256, 258, 408
BstKTI GATC 5 cut(s) 331, 539, 641, 731, 934
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 5 cut(s) 328, 536, 638, 728, 931
BstMWI GCNNNNNNNGC 5 cut(s) 198, 409, 607, 692, 850
BstNI CCWGG 2 cut(s) 53, 726
BstNSI RCATGY 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 51, 74, 724
BstSFI CTRYAG 3 cut(s) 108, 831, 845
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 122, 415, 679, 798
BstX2I RGATCY 2 cut(s) 536, 728
BstYI RGATCY 2 cut(s) 536, 728
BsuRI GGCC 8 cut(s) 21, 51, 390, 570, 610, 682, 746, 1006
BtgI CCRYGG 2 cut(s) 398, 435
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 6 cut(s) 108, 203, 256, 410, 684, 842
CaiI CAGNNNCTG 1 cut(s) 853
CfoI GCGC 3 cut(s) 256, 258, 408
Cfr10I RCCGGY 1 cut(s) 1009
Cfr13I GGNCC 8 cut(s) 19, 117, 343, 520, 568, 681, 745, 959
CseI GACGC 1 cut(s) 859
Csp6I GTAC 1 cut(s) 794
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 5 cut(s) 173, 289, 436, 479, 703
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 330, 538, 640, 730, 933
DpnII GATC 5 cut(s) 328, 536, 638, 728, 931
DraI TTTAAA 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 2 cut(s) 49, 1004
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 3 cut(s) 435, 509, 962
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 4 cut(s) 117, 343, 520, 959
Eco47III AGCGCT 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 2 cut(s) 343, 568
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 51, 724
EcoT14I CCWWGG 3 cut(s) 435, 509, 962
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 3 cut(s) 435, 509, 962
FaeI CATG 5 cut(s) 176, 292, 439, 482, 706
FaqI GGGAC 4 cut(s) 22, 130, 356, 972
FatI CATG 5 cut(s) 172, 288, 435, 478, 702
FauI CCCGC 1 cut(s) 691
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 6 cut(s) 111, 404, 476, 693, 787, 1004
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 6 cut(s) 111, 404, 476, 693, 787, 1004
FspBI CTAG 2 cut(s) 564, 668
GlaI GCGC 3 cut(s) 255, 257, 407
GluI GCNGC 6 cut(s) 111, 404, 476, 693, 787, 1004
GsaI CCCAGC 3 cut(s) 117, 857, 947
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 8 cut(s) 21, 51, 390, 570, 610, 682, 746, 1006
HapII CCGG 2 cut(s) 75, 1010
HgaI GACGC 1 cut(s) 859
HhaI GCGC 3 cut(s) 256, 258, 408
Hin1II CATG 5 cut(s) 176, 292, 439, 482, 706
Hin6I GCGC 3 cut(s) 254, 256, 406
HinP1I GCGC 3 cut(s) 254, 256, 406
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 5 cut(s) 98, 444, 485, 586, 973
HpaII CCGG 2 cut(s) 75, 1010
HphI GGTGA 2 cut(s) 281, 827
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 6 cut(s) 82, 97, 278, 318, 333, 638
Hpy188III TCNNGA 3 cut(s) 350, 590, 668
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 356, 390, 459, 600
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4IV ACGT 2 cut(s) 810, 1018
HpyCH4V TGCA 5 cut(s) 110, 292, 464, 601, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 409, 607, 692, 850
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 2 cut(s) 810, 1018
Hsp92II CATG 5 cut(s) 176, 292, 439, 482, 706
HspAI GCGC 3 cut(s) 254, 256, 406
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 5 cut(s) 328, 536, 638, 728, 931
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 4 cut(s) 122, 415, 679, 798
LweI GCATC 2 cut(s) 241, 661
MaeI CTAG 2 cut(s) 564, 668
MaeII ACGT 2 cut(s) 810, 1018
MaeIII GTNAC 3 cut(s) 25, 269, 556
MalI GATC 5 cut(s) 330, 538, 640, 730, 933
MboI GATC 5 cut(s) 328, 536, 638, 728, 931
MboII GAAGA 6 cut(s) 73, 546, 605, 968, 979, 982
MflI RGATCY 2 cut(s) 536, 728
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 3 cut(s) 496, 596, 894
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 479
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 448
MscI TGGCCA 1 cut(s) 51
MseI TTAA 3 cut(s) 282, 527, 882
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 75, 1010
MspR9I CCNGG 3 cut(s) 53, 76, 726
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 53, 726
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 5 cut(s) 198, 409, 607, 692, 850
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 435
NdeII GATC 5 cut(s) 328, 536, 638, 728, 931
NlaIII CATG 5 cut(s) 176, 292, 439, 482, 706
NlaIV GGNNCC 8 cut(s) 20, 118, 344, 433, 569, 645, 747, 960
NmuCI GTSAC 2 cut(s) 269, 556
NspI RCATGY 1 cut(s) 482
PauI GCGCGC 1 cut(s) 254
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 4 cut(s) 98, 444, 586, 973
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 6 cut(s) 112, 405, 477, 694, 788, 1005
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 811
PpuMI RGGWCCY 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 51, 724
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 3 cut(s) 113, 853, 943
PspGI CCWGG 2 cut(s) 51, 724
PspN4I GGNNCC 8 cut(s) 20, 118, 344, 433, 569, 645, 747, 960
PspPI GGNCC 8 cut(s) 19, 117, 343, 520, 568, 681, 745, 959
PspPPI RGGWCCY 1 cut(s) 343
PstI CTGCAG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 853
PsuI RGATCY 2 cut(s) 536, 728
PteI GCGCGC 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 282, 527, 882
SatI GCNGC 6 cut(s) 111, 404, 476, 693, 787, 1004
Sau3AI GATC 5 cut(s) 328, 536, 638, 728, 931
Sau96I GGNCC 8 cut(s) 19, 117, 343, 520, 568, 681, 745, 959
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 3 cut(s) 53, 76, 726
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 2 cut(s) 241, 661
SfcI CTRYAG 3 cut(s) 108, 831, 845
SgrAI CRCCGGYG 1 cut(s) 1009
SinI GGWCC 4 cut(s) 117, 343, 520, 959
Sse9I AATT 3 cut(s) 496, 596, 894
SsiI CCGC 4 cut(s) 124, 476, 684, 1003
SspMI CTAG 2 cut(s) 564, 668
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 51, 74, 724
StyI CCWWGG 3 cut(s) 435, 509, 962
TaaI ACNGT 1 cut(s) 832
TaiI ACGT 2 cut(s) 813, 1021
TaqI TCGA 2 cut(s) 14, 442
TasI AATT 3 cut(s) 496, 596, 894
TatI WGTACW 1 cut(s) 793
TauI GCSGC 2 cut(s) 478, 1006
TfiI GAWTC 4 cut(s) 98, 444, 586, 973
Tru1I TTAA 3 cut(s) 282, 527, 882
Tru9I TTAA 3 cut(s) 282, 527, 882
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 269, 556
TseI GCWGC 4 cut(s) 110, 403, 692, 786
Tsp45I GTSAC 2 cut(s) 269, 556
TspDTI ATGAA 3 cut(s) 691, 795, 834
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 4 cut(s) 117, 343, 520, 959
XapI RAATTY 1 cut(s) 496
XbaI TCTAGA 1 cut(s) 667
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 2 cut(s) 564, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.