RLG00000003329

SAM domain (Sterile alpha motif)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
47182274 .. 47183813
1540 bp
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UTR
Exon/CDS
Intron
RLM00000003329

Sequence Viewer

Length: 369 bp
ATGAACTTGTTAGACCCTCCACCTTTGGAGGATGACTATTCATTGCATCTGATGTTAGAGGGTGATGAACAACAGACAGTAGATGGCTTGCTGCAACACCTCGGATTGGGAAAATATGCCATTATATTCAAGGCTGAGGAAATTGATATGACTGCATTGAAGCATATGGGAGAAAATGACCTCAAAGAGCTGGGAATACCTATGGTGGAGGGGGTGAATGGTTTGGTTTCAGAACTTGCTGTTGTAGCAGCGCAGAAGAAAGCCATGCTTGCCAAATGTGAAGCATTGCTGGCTTCAGCAGCAGCTATGAATTGTTTTAATTTTTGTTTGGTCCTTTGCTTACTAGAATTTAGGGACGGGGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.29

Weight (kDa)

4.43

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 24 - 66 1e-09 SAM domain (Sterile alpha motif)
SAM_2 PF07647 25 - 67 1.1e-06 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 130, 160
AluBI AGCT 2 cut(s) 190, 305
AluI AGCT 2 cut(s) 190, 305
ApeKI GCWGC 4 cut(s) 91, 248, 299, 302
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 74, 226
AvaII GGWCC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 78, 260, 311, 314
BccI CCATC 1 cut(s) 77
BfaI CTAG 1 cut(s) 344
BisI GCNGC 4 cut(s) 92, 249, 300, 303
BlsI GCNGC 4 cut(s) 93, 250, 301, 304
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 2 cut(s) 41, 284
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 2 cut(s) 41, 284
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 4 cut(s) 78, 260, 311, 314
BseYI CCCAGC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 41, 284
BssECI CCNNGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 89, 270, 291
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 245, 269, 290, 299
BstV1I GCAGC 4 cut(s) 78, 260, 311, 314
BtsCI GGATG 1 cut(s) 37
Cac8I GCNNGC 3 cut(s) 89, 270, 291
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 331
CviAII CATG 1 cut(s) 265
CviJI RGCY 6 cut(s) 87, 134, 190, 263, 293, 305
CviKI_1 RGCY 6 cut(s) 87, 134, 190, 263, 293, 305
DdeI CTNAG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 279
FaeI CATG 1 cut(s) 268
FaiI YATR 8 cut(s) 117, 125, 149, 165, 167, 203, 266, 308
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 1 cut(s) 264
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 92, 249, 300, 303
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 92, 249, 300, 303
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 252
GluI GCNGC 4 cut(s) 92, 249, 300, 303
GsaI CCCAGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HphI GGTGA 2 cut(s) 74, 226
Hpy188I TCNGA 3 cut(s) 51, 104, 232
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 46, 94, 155
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 269, 290, 299
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 251
LpnPI CCDG 2 cut(s) 176, 275
Lsp1109I GCAGC 4 cut(s) 78, 260, 311, 314
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 344
MboII GAAGA 1 cut(s) 268
MluCI AATT 5 cut(s) 141, 310, 319, 347, 364
MnlI CCTC 7 cut(s) 22, 27, 52, 110, 130, 191, 202
MseI TTAA 2 cut(s) 318, 363
MwoI GCNNNNNNNGC 4 cut(s) 245, 269, 290, 299
NdeI CATATG 1 cut(s) 165
NlaIII CATG 1 cut(s) 268
PkrI GCNGC 4 cut(s) 93, 250, 301, 304
PspFI CCCAGC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 331
SaqAI TTAA 2 cut(s) 318, 363
SatI GCNGC 4 cut(s) 92, 249, 300, 303
Sau96I GGNCC 1 cut(s) 331
SetI ASST 6 cut(s) 25, 102, 183, 192, 202, 307
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 331
Sse9I AATT 5 cut(s) 141, 310, 319, 347, 364
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 79
TasI AATT 5 cut(s) 141, 310, 319, 347, 364
Tru1I TTAA 2 cut(s) 318, 363
Tru9I TTAA 2 cut(s) 318, 363
TseI GCWGC 4 cut(s) 91, 248, 299, 302
TspDTI ATGAA 4 cut(s) 17, 30, 81, 323
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 347
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.