Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Forward (+)

87067192 .. 87071205

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG643500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCGTGGCGTAAGAGGTATGGTTTCGGGAGGTAAACGATCAATGGGAGACAGGCTTGGGAGTAATGCTCATGGAAAGCGGCAACGAGGAGATGGAATAAAATGGAGAGGGGGTGACAATACATTACATGATTCACGAATCAGTCGAAATGACCTCAGATTGAAACTGTTGCGCAAAAGATCATTTAAGCAAAATGGGGGAGTTGTTGCAGAACGCAAGCAGATGGTCCCGCGCCCAAAGCTGTCAAAACCTGCTCATTCTGCAGTGAGGTATCAGATGCCACAGCACAAGTCAGAAACAAATGAGAGTAGCTTCCTGAGGCAAATTCCTCCCAGGGAAACTGCAGCTGATTTGTATCATGTAAATTCACAGAGGAACTACAACTCTTCTCAAAGTAGAGAAGGATTCCGAGCTAGATCCCCCGATAACTTTGTGAACACTTCTTATGGGCCATCACCTCAAAGAAACTTTGGTGAGCTGCAGTCAGCATCATCCTTCAGGGCAGCTGACGCTCCTAGAGCTGGCCAGTTCCTGAGAAATGGTATGGTTGGTTCGTCTCAGCCAACAGATTCCTTCCTTTTCAGAACAAAATCTAACCCTCAAACTGCCAAGCCAGTTGGACAGCTTGTGCCAACAAATTACAGCATGCAAAAAGTCCCTTATATGGGGGAGGAACCTCTAAGTGTTGCTAGTTTATTGCATAGACTTGGTTTGGGAAAATATGCTATTATTTTCCAGGCTGAAGAAGTGGACATGGGTACTCTGAAGCAGATGGGGGATAAGGACCTTAAAGAGCTGGGTATACCAATGGGGCCAAGGAAAAAGATTCTTCTTGCGCTTTTGGCCCGTGGTAAACGACCGCCGCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

290

Amino Acids

32.28

Weight (kDa)

10.88

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	227 - 280	6.2e-13	SAM domain (Sterile alpha motif)
SAM_2	PF07647	228 - 279	6.8e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	79, 230, 860, 863
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	324, 364
AcuI	CTGAAG	3 cut(s)	481, 762, 785
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	3 cut(s)	521, 664, 665
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	332, 735
AluBI	AGCT	9 cut(s)	241, 312, 347, 413, 478, 506, 521, 625, 796
AluI	AGCT	9 cut(s)	241, 312, 347, 413, 478, 506, 521, 625, 796
Alw26I	GTCTC	2 cut(s)	42, 561
AlwI	GGATC	1 cut(s)	411
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	4 cut(s)	449, 523, 812, 843
ApeKI	GCWGC	3 cut(s)	344, 478, 503
ApoI	RAATTY	2 cut(s)	324, 364
AspLEI	GCGC	3 cut(s)	174, 234, 838
AspS9I	GGNCC	5 cut(s)	226, 449, 784, 812, 844
AsuHPI	GGTGA	3 cut(s)	125, 447, 485
AvaII	GGWCC	2 cut(s)	226, 784
AxyI	CCTNAGG	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	356, 465, 515
BccI	CCATC	4 cut(s)	86, 217, 460, 766
BciT130I	CCWGG	2 cut(s)	334, 737
BcoDI	GTCTC	2 cut(s)	42, 561
BfaI	CTAG	3 cut(s)	414, 516, 690
BfmI	CTRYAG	3 cut(s)	261, 342, 479
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	80, 345, 479, 504, 863
BlsI	GCNGC	5 cut(s)	81, 346, 480, 505, 864
Bme1390I	CCNGG	2 cut(s)	334, 737
Bme18I	GGWCC	2 cut(s)	226, 784
BmgT120I	GGNCC	5 cut(s)	226, 449, 784, 812, 844
BmiI	GGNNCC	3 cut(s)	228, 675, 813
BmrFI	CCNGG	2 cut(s)	334, 737
BmsI	GCATC	2 cut(s)	267, 497
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	332, 333, 815, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	3 cut(s)	521, 664, 665
Bse1I	ACTGG	2 cut(s)	526, 614
Bse21I	CCTNAGG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	334, 737
BseDI	CCNNGG	4 cut(s)	332, 333, 815, 847
BseGI	GGATG	1 cut(s)	491
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	521, 664, 665
BseMII	CTCAG	4 cut(s)	169, 308, 524, 572
BseNI	ACTGG	2 cut(s)	526, 614
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	356, 465, 515
BseYI	CCCAGC	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	860
BshFI	GGCC	4 cut(s)	451, 525, 814, 845
BsiEI	CGRYCG	1 cut(s)	860
BslFI	GGGAC	2 cut(s)	212, 641
BslI	CCNNNNNNNGG	3 cut(s)	521, 664, 665
BsmAI	GTCTC	2 cut(s)	42, 561
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	2 cut(s)	212, 641
BsnI	GGCC	4 cut(s)	451, 525, 814, 845
Bsp143I	GATC	3 cut(s)	38, 179, 416
BspACI	CCGC	4 cut(s)	79, 230, 860, 863
BspANI	GGCC	4 cut(s)	451, 525, 814, 845
BspCNI	CTCAG	4 cut(s)	168, 309, 525, 571
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	228, 675, 813
BspMAI	CTGCAG	3 cut(s)	265, 346, 483
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	526, 614
BssECI	CCNNGG	4 cut(s)	332, 333, 815, 847
BssMI	GATC	3 cut(s)	38, 179, 416
BssNAI	GTATAC	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	815
Bst1107I	GTATAC	1 cut(s)	803
Bst2UI	CCWGG	2 cut(s)	334, 737
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	218, 523, 647
BstDEI	CTNAG	5 cut(s)	155, 317, 533, 558, 680
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	3 cut(s)	174, 234, 838
BstKTI	GATC	3 cut(s)	41, 182, 419
BstMAI	GTCTC	2 cut(s)	42, 561
BstMBI	GATC	3 cut(s)	38, 179, 416
BstMCI	CGRYCG	1 cut(s)	860
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 260, 509, 518, 842
BstNI	CCWGG	2 cut(s)	334, 737
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	332, 735
BstSFI	CTRYAG	3 cut(s)	261, 342, 479
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	356, 465, 515
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZ17I	GTATAC	1 cut(s)	803
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	4 cut(s)	451, 525, 814, 845
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	218, 523, 647
CaiI	CAGNNNCTG	1 cut(s)	532
CfoI	GCGC	3 cut(s)	174, 234, 838
Cfr13I	GGNCC	5 cut(s)	226, 449, 784, 812, 844
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	5 cut(s)	71, 128, 359, 646, 754
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	5 cut(s)	155, 317, 533, 558, 680
DpnI	GATC	3 cut(s)	40, 181, 418
DpnII	GATC	3 cut(s)	38, 179, 416
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	815
Eco47I	GGWCC	2 cut(s)	226, 784
Eco57I	CTGAAG	3 cut(s)	481, 762, 785
Eco81I	CCTNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRII	CCWGG	2 cut(s)	332, 735
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	5 cut(s)	74, 131, 362, 649, 757
FaqI	GGGAC	2 cut(s)	212, 641
FatI	CATG	5 cut(s)	70, 127, 358, 645, 753
FauI	CCCGC	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	5 cut(s)	80, 345, 479, 504, 863
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	5 cut(s)	80, 345, 479, 504, 863
FspBI	CTAG	3 cut(s)	414, 516, 690
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	3 cut(s)	173, 233, 837
GluI	GCNGC	5 cut(s)	80, 345, 479, 504, 863
GsaI	CCCAGC	1 cut(s)	800
HaeIII	GGCC	4 cut(s)	451, 525, 814, 845
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	3 cut(s)	174, 234, 838
Hin1II	CATG	5 cut(s)	74, 131, 362, 649, 757
Hin6I	GCGC	3 cut(s)	172, 232, 836
HinP1I	GCGC	3 cut(s)	172, 232, 836
HinfI	GANTC	5 cut(s)	131, 138, 405, 569, 826
HphI	GGTGA	3 cut(s)	125, 447, 485
Hpy166II	GTNNAC	5 cut(s)	35, 436, 751, 803, 854
Hpy188I	TCNGA	6 cut(s)	158, 276, 295, 410, 584, 765
Hpy188III	TCNNGA	4 cut(s)	27, 135, 316, 532
Hpy8I	GTNNAC	5 cut(s)	35, 436, 751, 803, 854
HpyAV	CCTTC	3 cut(s)	395, 505, 583
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	209, 263, 344, 481, 649, 700
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 260, 509, 518, 842
HpyF3I	CTNAG	5 cut(s)	155, 317, 533, 558, 680
Hsp92II	CATG	5 cut(s)	74, 131, 362, 649, 757
HspAI	GCGC	3 cut(s)	172, 232, 836
Kzo9I	GATC	3 cut(s)	38, 179, 416
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	356, 465, 515
LweI	GCATC	2 cut(s)	267, 497
MaeI	CTAG	3 cut(s)	414, 516, 690
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	40, 181, 418
MboI	GATC	3 cut(s)	38, 179, 416
MboII	GAAGA	3 cut(s)	378, 755, 821
MflI	RGATCY	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	3 cut(s)	324, 364, 637
MluNI	TGGCCA	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	598
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	186, 789
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	347, 506
MspR9I	CCNGG	2 cut(s)	334, 737
MvaI	CCWGG	2 cut(s)	334, 737
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	238, 260, 509, 518, 842
NdeII	GATC	3 cut(s)	38, 179, 416
NlaIII	CATG	5 cut(s)	74, 131, 362, 649, 757
NlaIV	GGNNCC	3 cut(s)	228, 675, 813
NmuCI	GTSAC	1 cut(s)	113
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	1 cut(s)	649
PaeI	GCATGC	1 cut(s)	649
PasI	CCCWGGG	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	5 cut(s)	131, 138, 405, 569, 826
PkrI	GCNGC	5 cut(s)	81, 346, 480, 505, 864
PpuMI	RGGWCCY	1 cut(s)	784
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	2 cut(s)	332, 735
PspFI	CCCAGC	1 cut(s)	796
PspGI	CCWGG	2 cut(s)	332, 735
PspN4I	GGNNCC	3 cut(s)	228, 675, 813
PspPI	GGNCC	5 cut(s)	226, 449, 784, 812, 844
PspPPI	RGGWCCY	1 cut(s)	784
PsrI	GAACNNNNNNTAC	2 cut(s)	535, 567
PstI	CTGCAG	3 cut(s)	265, 346, 483
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	2 cut(s)	347, 506
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
SaqAI	TTAA	2 cut(s)	186, 789
SatI	GCNGC	5 cut(s)	80, 345, 479, 504, 863
Sau3AI	GATC	3 cut(s)	38, 179, 416
Sau96I	GGNCC	5 cut(s)	226, 449, 784, 812, 844
ScrFI	CCNGG	2 cut(s)	334, 737
SfaNI	GCATC	2 cut(s)	267, 497
SfcI	CTRYAG	3 cut(s)	261, 342, 479
SinI	GGWCC	2 cut(s)	226, 784
SphI	GCATGC	1 cut(s)	649
Sse9I	AATT	3 cut(s)	324, 364, 637
SsiI	CCGC	4 cut(s)	79, 230, 860, 863
SspMI	CTAG	3 cut(s)	414, 516, 690
StyD4I	CCNGG	2 cut(s)	332, 735
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	145
TasI	AATT	3 cut(s)	324, 364, 637
TauI	GCSGC	2 cut(s)	82, 865
TfiI	GAWTC	5 cut(s)	131, 138, 405, 569, 826
Tru1I	TTAA	2 cut(s)	186, 789
Tru9I	TTAA	2 cut(s)	186, 789
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	344, 478, 503
Tsp45I	GTSAC	1 cut(s)	113
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	226, 784
XapI	RAATTY	2 cut(s)	324, 364
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	802
XspI	CTAG	3 cut(s)	414, 516, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.