Prupe.3G278600_v2.0.a1

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001403
Physical Location & Seq
Forward (+)
25545402 .. 25547883
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G278600.1

Sequence Viewer

Length: 933 bp
ATGTCGCAGCCCAGGGTCACCATCACCCTTGGTCGCTCTGGTCAGGTTGTGGAGAGGGGAGGATCGGCATCAGACTCTGTGAGAGTGCATGGCTATAGTGGGCTAGTTTCTGGAAGTAAGCGATCAATGGGAGACAGACTTGGGAGTAATGCTCATGGTCTTTCATTTTCCGCTGGCAAGCGGCAACGAGGAGATGGTAGAAAATGGGGTGGGGTTGACAAACAACTGCATGATTCACGAATCAGTCGAAATGACCTCAGATTGAAGTTGTTGCGTAAAAGATTATTTAAGCAAACTGGTGGAGCTGTTGAAGAGCGCAAGCGGATGGACCCTCGTGTAAAGCTGTCAAAACCTGTTCATCCATCGATGAGATATCAGATGCTGCAGCACGAATCAGAAACAAATGGAAGTAGCGTGATGATGAAAATTCCTCCCAGTGAAAATGCAGCTGATTTATACCAGGTAAATTCACGAAGGAACTTCTACTCTTCTCAACCTACGGATGGATTCAGAGCTAGATCCCCACCAAGAAATTTTGATGAGCTGCGCCCAGCATCATCATTTAGGGCAGTTGATGCCTCTAGATCTGGCCAGTTCCTGAGAAATGGTATGGTTGGTGGTTCTCAGCCAACAGACTCCTTACTTTTCCCAATGAAAGCTACCCCTCAAGCTGCCAGGCCAGTTGCACAATTTGCTCCAGCAAGTGGCAGCATGCAGAAAAGTTCACTTATGGGGGATGAACCTACTGTTCCTGGATTGTTGCATAGACTTGGTTTGGGAAAATATGTCATTATTTTCCAGGCTGAAGAAGTTGACATGACTGCTTTGAAGCAGATGGGGGATAAGGACCTCAAAGAGCTGGGTATACCGATGGGACCAAGAAAAAAGATTCTTCTAGCTCTCTTGCCCCGTACGAAACGGCAGCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1

Protein Analysis

311

Amino Acids

34.15

Weight (kDa)

10.85

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AccI GTMKAC 1 cut(s) 865
AciI CCGC 3 cut(s) 171, 181, 322
AclWI GGATC 2 cut(s) 70, 513
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 3 cut(s) 426, 466, 532
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 1 cut(s) 913
AfiI CCNNNNNNNGG 2 cut(s) 503, 704
AgsI TTSAA 3 cut(s) 265, 311, 829
AjnI CCWGG 5 cut(s) 11, 459, 674, 751, 798
AluBI AGCT 9 cut(s) 305, 343, 449, 515, 544, 659, 671, 859, 899
AluI AGCT 9 cut(s) 305, 343, 449, 515, 544, 659, 671, 859, 899
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 2 cut(s) 70, 513
AlwNI CAGNNNCTG 3 cut(s) 77, 382, 598
AoxI GGCC 2 cut(s) 589, 677
ApeKI GCWGC 8 cut(s) 7, 382, 385, 446, 544, 671, 708, 922
ApoI RAATTY 3 cut(s) 426, 466, 532
AspLEI GCGC 2 cut(s) 318, 549
AspS9I GGNCC 3 cut(s) 328, 847, 875
AsuHPI GGTGA 2 cut(s) 10, 16
AvaII GGWCC 3 cut(s) 328, 847, 875
BalI TGGCCA 1 cut(s) 591
BauI CACGAG 1 cut(s) 333
BbvI GCAGC 7 cut(s) 19, 369, 397, 458, 531, 658, 720
BccI CCATC 7 cut(s) 29, 188, 319, 370, 497, 829, 865
BciT130I CCWGG 5 cut(s) 13, 461, 676, 753, 800
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 4 cut(s) 104, 516, 582, 896
BfmI CTRYAG 2 cut(s) 94, 383
BglII AGATCT 1 cut(s) 584
BisI GCNGC 9 cut(s) 8, 182, 383, 386, 447, 545, 672, 709, 923
BlsI GCNGC 9 cut(s) 9, 183, 384, 387, 448, 546, 673, 710, 924
Bme1390I CCNGG 5 cut(s) 13, 461, 676, 753, 800
Bme18I GGWCC 3 cut(s) 328, 847, 875
BmgT120I GGNCC 3 cut(s) 328, 847, 875
BmiI GGNNCC 2 cut(s) 330, 876
BmrFI CCNGG 5 cut(s) 13, 461, 676, 753, 800
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 4 cut(s) 77, 369, 563, 565
BmuI ACTGGG 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 11, 12, 28
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 704
Bse1I ACTGG 4 cut(s) 301, 435, 592, 680
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 5 cut(s) 13, 461, 676, 753, 800
BseCI ATCGAT 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 11, 12, 28
BseGI GGATG 4 cut(s) 330, 358, 508, 742
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 503, 704
BseMII CTCAG 3 cut(s) 271, 590, 638
BseNI ACTGG 4 cut(s) 301, 435, 592, 680
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 7 cut(s) 19, 369, 397, 458, 531, 658, 720
BseYI CCCAGC 2 cut(s) 550, 859
BshFI GGCC 2 cut(s) 591, 679
BshVI ATCGAT 1 cut(s) 365
BsiWI CGTACG 1 cut(s) 911
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 503, 704
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 888
BsnI GGCC 2 cut(s) 591, 679
Bsp143I GATC 4 cut(s) 62, 122, 518, 584
BspACI CCGC 3 cut(s) 171, 181, 322
BspANI GGCC 2 cut(s) 591, 679
BspCNI CTCAG 3 cut(s) 270, 591, 637
BspDI ATCGAT 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 330, 876
BspMAI CTGCAG 1 cut(s) 387
BspPI GGATC 2 cut(s) 70, 513
BspQI GCTCTTC 1 cut(s) 306
BsrI ACTGG 4 cut(s) 301, 435, 592, 680
BssECI CCNNGG 3 cut(s) 11, 12, 28
BssMI GATC 4 cut(s) 62, 122, 518, 584
BssNAI GTATAC 1 cut(s) 866
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 28
Bst1107I GTATAC 1 cut(s) 866
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 5 cut(s) 13, 461, 676, 753, 800
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 306, 493
BstAPI GCANNNNNTGC 2 cut(s) 575, 692
BstC8I GCNNGC 4 cut(s) 175, 179, 320, 713
BstDEI CTNAG 3 cut(s) 257, 599, 624
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 4 cut(s) 330, 358, 508, 742
BstHHI GCGC 2 cut(s) 318, 549
BstKTI GATC 4 cut(s) 65, 125, 521, 587
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 4 cut(s) 62, 122, 518, 584
BstMWI GCNNNNNNNGC 2 cut(s) 575, 692
BstNI CCWGG 5 cut(s) 13, 461, 676, 753, 800
BstNSI RCATGY 1 cut(s) 715
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 5 cut(s) 11, 459, 674, 751, 798
BstSFI CTRYAG 2 cut(s) 94, 383
BstV1I GCAGC 7 cut(s) 19, 369, 397, 458, 531, 658, 720
BstX2I RGATCY 2 cut(s) 518, 584
BstYI RGATCY 2 cut(s) 518, 584
BstZ17I GTATAC 1 cut(s) 866
Bsu15I ATCGAT 1 cut(s) 365
BsuRI GGCC 2 cut(s) 591, 679
BsuTUI ATCGAT 1 cut(s) 365
BtsCI GGATG 4 cut(s) 330, 358, 508, 742
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 4 cut(s) 175, 179, 320, 713
CaiI CAGNNNCTG 3 cut(s) 77, 382, 598
CfoI GCGC 2 cut(s) 318, 549
Cfr13I GGNCC 3 cut(s) 328, 847, 875
ClaI ATCGAT 1 cut(s) 365
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 1 cut(s) 912
CviAII CATG 5 cut(s) 89, 155, 230, 712, 817
CviQI GTAC 1 cut(s) 912
DdeI CTNAG 3 cut(s) 257, 599, 624
DpnI GATC 4 cut(s) 64, 124, 520, 586
DpnII GATC 4 cut(s) 62, 122, 518, 584
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 306, 493
EarI CTCTTC 2 cut(s) 306, 493
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 374
Eco47I GGWCC 3 cut(s) 328, 847, 875
Eco57I CTGAAG 1 cut(s) 825
Eco91I GGTNACC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 847
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 5 cut(s) 11, 459, 674, 751, 798
EcoRV GATATC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 5 cut(s) 92, 158, 233, 715, 820
FaqI GGGAC 1 cut(s) 888
FatI CATG 5 cut(s) 88, 154, 229, 711, 816
FblI GTMKAC 1 cut(s) 865
Fnu4HI GCNGC 9 cut(s) 8, 182, 383, 386, 447, 545, 672, 709, 923
FokI GGATG 4 cut(s) 337, 345, 515, 749
Fsp4HI GCNGC 9 cut(s) 8, 182, 383, 386, 447, 545, 672, 709, 923
FspBI CTAG 4 cut(s) 104, 516, 582, 896
GlaI GCGC 2 cut(s) 317, 548
GluI GCNGC 9 cut(s) 8, 182, 383, 386, 447, 545, 672, 709, 923
GsaI CCCAGC 2 cut(s) 554, 863
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 2 cut(s) 591, 679
HhaI GCGC 2 cut(s) 318, 549
Hin1II CATG 5 cut(s) 92, 158, 233, 715, 820
Hin6I GCGC 2 cut(s) 316, 547
HinP1I GCGC 2 cut(s) 316, 547
HincII GTYRAC 2 cut(s) 217, 814
HindII GTYRAC 2 cut(s) 217, 814
HinfI GANTC 7 cut(s) 74, 233, 240, 392, 507, 635, 889
HphI GGTGA 2 cut(s) 10, 16
Hpy166II GTNNAC 4 cut(s) 217, 725, 814, 866
Hpy188I TCNGA 5 cut(s) 73, 260, 378, 397, 512
Hpy188III TCNNGA 5 cut(s) 111, 237, 471, 582, 598
Hpy8I GTNNAC 4 cut(s) 217, 725, 814, 866
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 7 cut(s) 88, 229, 385, 446, 686, 715, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 692
HpyF3I CTNAG 3 cut(s) 257, 599, 624
Hsp92II CATG 5 cut(s) 92, 158, 233, 715, 820
HspAI GCGC 2 cut(s) 316, 547
Kzo9I GATC 4 cut(s) 62, 122, 518, 584
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 302, 700
Lsp1109I GCAGC 7 cut(s) 19, 369, 397, 458, 531, 658, 720
LweI GCATC 4 cut(s) 77, 369, 563, 565
MabI ACCWGGT 1 cut(s) 459
MaeI CTAG 4 cut(s) 104, 516, 582, 896
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 64, 124, 520, 586
MboI GATC 4 cut(s) 62, 122, 518, 584
MboII GAAGA 4 cut(s) 323, 480, 818, 884
MflI RGATCY 2 cut(s) 518, 584
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 4 cut(s) 426, 466, 532, 689
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 68, 629
MnlI CCTC 9 cut(s) 48, 53, 182, 266, 342, 441, 589, 675, 860
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MseI TTAA 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 591
MspA1I CMGCKG 2 cut(s) 173, 449
MspR9I CCNGG 5 cut(s) 13, 461, 676, 753, 800
MvaI CCWGG 5 cut(s) 13, 461, 676, 753, 800
MwoI GCNNNNNNNGC 2 cut(s) 575, 692
NdeII GATC 4 cut(s) 62, 122, 518, 584
NlaIII CATG 5 cut(s) 92, 158, 233, 715, 820
NlaIV GGNNCC 2 cut(s) 330, 876
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 715
PaeI GCATGC 1 cut(s) 715
PasI CCCWGGG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PfeI GAWTC 5 cut(s) 233, 240, 392, 507, 889
Pfl23II CGTACG 1 cut(s) 911
PflMI CCANNNNNTGG 1 cut(s) 704
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 9 cut(s) 9, 183, 384, 387, 448, 546, 673, 710, 924
PleI GAGTC 2 cut(s) 68, 629
PpsI GAGTC 2 cut(s) 68, 629
PpuMI RGGWCCY 1 cut(s) 847
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 5 cut(s) 11, 459, 674, 751, 798
PspEI GGTNACC 1 cut(s) 16
PspFI CCCAGC 2 cut(s) 550, 859
PspGI CCWGG 5 cut(s) 11, 459, 674, 751, 798
PspLI CGTACG 1 cut(s) 911
PspN4I GGNNCC 2 cut(s) 330, 876
PspPI GGNCC 3 cut(s) 328, 847, 875
PspPPI RGGWCCY 1 cut(s) 847
PstI CTGCAG 1 cut(s) 387
PstNI CAGNNNCTG 3 cut(s) 77, 382, 598
PsuI RGATCY 2 cut(s) 518, 584
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 913
RsaNI GTAC 1 cut(s) 912
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 9 cut(s) 8, 182, 383, 386, 447, 545, 672, 709, 923
Sau3AI GATC 4 cut(s) 62, 122, 518, 584
Sau96I GGNCC 3 cut(s) 328, 847, 875
SchI GAGTC 2 cut(s) 68, 629
ScrFI CCNGG 5 cut(s) 13, 461, 676, 753, 800
SexAI ACCWGGT 1 cut(s) 459
SfaNI GCATC 4 cut(s) 77, 369, 563, 565
SfcI CTRYAG 2 cut(s) 94, 383
SinI GGWCC 3 cut(s) 328, 847, 875
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SphI GCATGC 1 cut(s) 715
Sse9I AATT 4 cut(s) 426, 466, 532, 689
SsiI CCGC 3 cut(s) 171, 181, 322
SspMI CTAG 4 cut(s) 104, 516, 582, 896
StyD4I CCNGG 5 cut(s) 11, 459, 674, 751, 798
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 2 cut(s) 247, 365
TasI AATT 4 cut(s) 426, 466, 532, 689
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 5 cut(s) 233, 240, 392, 507, 889
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 8 cut(s) 7, 382, 385, 446, 544, 671, 708, 922
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 5 cut(s) 153, 347, 437, 668, 753
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 3 cut(s) 328, 847, 875
XapI RAATTY 3 cut(s) 426, 466, 532
XbaI TCTAGA 1 cut(s) 581
XceI RCATGY 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 865
XspI CTAG 4 cut(s) 104, 516, 582, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.