Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001403

Physical Location & Seq

Genomic Coordinates Reverse (-)

1886529 .. 1888839

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCGAATTCCAGGGTCACCATCACCCTCGGTCGCTCTGGTCAGGTTGTGGAGAGAGGAGGATTTGTATCCAATTCTGCGAAGGTGCGTGGTGATAGTGGGATGGTTTCCGGAAGTAAACGAATGGCAGGCAGACTTGGGAGTAATGCTCATGGTTTTTCGTTTTCTGCGGGCAAACGATTGAAATTGTTGCATAAAAGATTATCTAAGAAGCAAATTGACGGAGTTGCTGAAGAGCGCAAGCAGATGGACCCTCATGCAAAGCTTTCAAAACCTGTTCATCCTTCACTGAGATACCAGGTGCTGCAGCATACTTCTGAAACAAATGCAAGTAGCCCCATGAGGCAGGCTCCTCTGAGAGAAAGTCCAGCTGGTCTATACCAGGTAAATTCTCGAGGAAACTTCTACTCTTCTCCAACTACGGATGGATTCAGAGGTAGATCGCCACCAAGAGAGCTGCACCCACCATCATCATTTAGGCCAGTTGACGCTTGTAGAGCTGGCCAGTTCCCGAGAAATGGTATGGTTGGTTCTTCTCAGCCGACAGACTCCTTTATTTTCACAATGAAAGCTGCCCCTCAAGCTGCTAGGCCAATAGCACAGTTTGCTCCAGCAACTGGCGGCGTGCAGAGAAGTTCACAAATGGTACTACCTTGTGGTAACTGCACCATTTTAGCTTCCTTTTTGGGAAATCTGGTCATGTATTGCTACTTCAAATTTGATGAGTTTATCTCTGTGGTTGTGCAGGTGGATGACACTCGAACTGTTGCTGAGTTGTTGCATAGACTTGGTTTGGGTAAATATGCCATTATTTTCCAGGCTGAAGAAGTAGACATGACTGCTTTGAAGCAGATGGGGGATAAGGACCTCAAAGAGCTGGGCATACCGATGGTTTGCGAGGGTTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

304

Amino Acids

33.06

Weight (kDa)

9.8

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	253 - 295	6.4e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180 AT1G70180
fragaria_vesca	FvH4_4g35140 FvH4_4g35140 FvH4_4g35140 FvH4_6g19601 FvH4_6g50070
malus_domestica	MD13G1085900.v1.1 MD16G1085300.v1.1 MD17G1040400.v1.1
prunus_persica	Prupe.1G260800_v2.0.a1 Prupe.1G260800_v2.0.a1 Prupe.3G278600_v2.0.a1
pyrus_communis	pycom111g03110 pycom13g07430 pycom16g07370 pycom17g03620
rosa_chinensis	RchiOBHm_Chr2g0170341 RchiOBHm_Chr4g0444731
rosa_laevigata	RLG00000003329 RLG00000005806 RLG00000021947 RLG00000034752
rosa_multiflora	Rmu_co8479667.1_g000001 Rmu_sc0011601.1_g000010 Rmu_sc0012443.1_g000006 Rmu_sc0012445.1_g000014
rosa_roxburghii	Rroxscaffold_2G00081410 Rroxscaffold_3G00228170 Rroxscaffold_5G00385260
rosa_rugosa	Rorug01G0063100 Rorug02G0548300 Rorug02G0548400 Rorug04G0061700 Rorug04G0355000 Rorug04G0355100
rosa_samantha	Rh2AG619600 Rh2BG315400 Rh2BG630600 Rh2CG600700 Rh2DG643500 Rh4AG415700 Rh4BG427000 Rh4CG441800 Rh4DG423000 Rh5BG307900 Rh5DG318000
rosa_wichuraiana	Rw2G051330 Rw4G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc36I	ACCTGC	1 cut(s)	736
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	831
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	2 cut(s)	170, 621
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	7, 388, 716
AcuI	CTGAAG	2 cut(s)	252, 843
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	2 cut(s)	518, 617
AgsI	TTSAA	4 cut(s)	184, 270, 715, 847
AjnI	CCWGG	4 cut(s)	11, 297, 381, 816
AluBI	AGCT	8 cut(s)	265, 371, 457, 500, 572, 584, 677, 877
AluI	AGCT	8 cut(s)	265, 371, 457, 500, 572, 584, 677, 877
AlwNI	CAGNNNCTG	2 cut(s)	304, 617
Ama87I	CYCGRG	2 cut(s)	393, 511
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	3 cut(s)	479, 502, 590
ApeKI	GCWGC	5 cut(s)	304, 307, 457, 572, 584
ApoI	RAATTY	3 cut(s)	7, 388, 716
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	250, 865
AsuHPI	GGTGA	3 cut(s)	10, 16, 104
AvaI	CYCGRG	2 cut(s)	393, 511
AvaII	GGWCC	2 cut(s)	250, 865
BalI	TGGCCA	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
BbvI	GCAGC	5 cut(s)	291, 319, 444, 559, 571
BccI	CCATC	7 cut(s)	29, 97, 241, 419, 475, 847, 883
BciT130I	CCWGG	4 cut(s)	13, 299, 383, 818
BciVI	GTATCC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	6 cut(s)	305, 308, 458, 573, 585, 622
BlsI	GCNGC	6 cut(s)	306, 309, 459, 574, 586, 623
Bme1390I	CCNGG	4 cut(s)	13, 299, 383, 818
Bme18I	GGWCC	2 cut(s)	250, 865
BmeT110I	CYCGRG	2 cut(s)	393, 511
BmgT120I	GGNCC	2 cut(s)	250, 865
BmiI	GGNNCC	2 cut(s)	252, 351
BmrFI	CCNGG	4 cut(s)	13, 299, 383, 818
BplI	GAGNNNNNCTC	6 cut(s)	133, 165, 334, 366, 716, 748
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	12, 28
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 617
Bse1I	ACTGG	3 cut(s)	482, 505, 622
Bse8I	GATNNNNATC	1 cut(s)	67
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	4 cut(s)	13, 299, 383, 818
BseDI	CCNNGG	2 cut(s)	12, 28
BseGI	GGATG	4 cut(s)	108, 280, 430, 757
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	518, 617
BseMII	CTCAG	4 cut(s)	281, 347, 551, 762
BseNI	ACTGG	3 cut(s)	482, 505, 622
BseRI	GAGGAG	2 cut(s)	72, 342
BseXI	GCAGC	5 cut(s)	291, 319, 444, 559, 571
BseYI	CCCAGC	1 cut(s)	877
BsgI	GTGCAG	4 cut(s)	443, 647, 649, 764
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	481, 504, 592
BsiEI	CGRYCG	1 cut(s)	34
BsiHKCI	CYCGRG	2 cut(s)	393, 511
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	518, 617
BsnI	GGCC	3 cut(s)	481, 504, 592
BsoBI	CYCGRG	2 cut(s)	393, 511
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	2 cut(s)	170, 621
BspANI	GGCC	3 cut(s)	481, 504, 592
BspCNI	CTCAG	4 cut(s)	282, 348, 550, 763
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	252, 351
BspMAI	CTGCAG	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	736
BspQI	GCTCTTC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	482, 505, 622
BssECI	CCNNGG	2 cut(s)	12, 28
BssMI	GATC	1 cut(s)	440
Bst2UI	CCWGG	4 cut(s)	13, 299, 383, 818
Bst4CI	ACNGT	2 cut(s)	603, 766
Bst6I	CTCTTC	2 cut(s)	228, 415
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	6 cut(s)	130, 172, 242, 348, 502, 626
BstDEI	CTNAG	5 cut(s)	207, 290, 356, 537, 771
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	4 cut(s)	108, 280, 430, 757
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 581, 605
BstNI	CCWGG	4 cut(s)	13, 299, 383, 818
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	11, 297, 381, 816
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	291, 319, 444, 559, 571
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	481, 504, 592
BtsCI	GGATG	4 cut(s)	108, 280, 430, 757
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	6 cut(s)	130, 172, 242, 348, 502, 626
CaiI	CAGNNNCTG	2 cut(s)	304, 617
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	250, 865
CseI	GACGC	1 cut(s)	497
CsiI	ACCWGGT	2 cut(s)	297, 381
Csp6I	GTAC	1 cut(s)	647
CviAII	CATG	5 cut(s)	152, 257, 340, 700, 835
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	5 cut(s)	207, 290, 356, 537, 771
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	228, 415
EarI	CTCTTC	2 cut(s)	228, 415
Eco47I	GGWCC	2 cut(s)	250, 865
Eco57I	CTGAAG	2 cut(s)	252, 843
Eco88I	CYCGRG	2 cut(s)	393, 511
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	11, 297, 381, 816
FaeI	CATG	5 cut(s)	155, 260, 343, 703, 838
FatI	CATG	5 cut(s)	151, 256, 339, 699, 834
FauI	CCCGC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	6 cut(s)	305, 308, 458, 573, 585, 622
FokI	GGATG	4 cut(s)	115, 267, 437, 764
Fsp4HI	GCNGC	6 cut(s)	305, 308, 458, 573, 585, 622
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	6 cut(s)	305, 308, 458, 573, 585, 622
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	481, 504, 592
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	155, 260, 343, 703, 838
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	429, 548
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	10, 16, 104
Hpy166II	GTNNAC	4 cut(s)	119, 487, 638, 832
Hpy188I	TCNGA	3 cut(s)	319, 357, 434
Hpy188III	TCNNGA	3 cut(s)	111, 393, 511
Hpy8I	GTNNAC	4 cut(s)	119, 487, 638, 832
HpyAV	CCTTC	2 cut(s)	76, 294
HpyCH4III	ACNGT	2 cut(s)	603, 766
HpyCH4V	TGCA	9 cut(s)	193, 260, 307, 329, 460, 628, 666, 745, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 581, 605
HpyF3I	CTNAG	5 cut(s)	207, 290, 356, 537, 771
Hsp92II	CATG	5 cut(s)	155, 260, 343, 703, 838
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	355, 613
Lsp1109I	GCAGC	5 cut(s)	291, 319, 444, 559, 571
MabI	ACCWGGT	2 cut(s)	297, 381
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	16, 659
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	4 cut(s)	245, 402, 525, 836
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	6 cut(s)	7, 73, 185, 216, 388, 716
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	1 cut(s)	440
Mox20I	TGGCCA	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	4 cut(s)	13, 299, 383, 818
MvaI	CCWGG	4 cut(s)	13, 299, 383, 818
MwoI	GCNNNNNNNGC	3 cut(s)	497, 581, 605
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	5 cut(s)	155, 260, 343, 703, 838
NlaIV	GGNNCC	2 cut(s)	252, 351
NmuCI	GTSAC	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	393
PaqCI	CACCTGC	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	6 cut(s)	306, 309, 459, 574, 586, 623
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
PpuMI	RGGWCCY	1 cut(s)	865
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	4 cut(s)	11, 297, 381, 816
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	4 cut(s)	11, 297, 381, 816
PspN4I	GGNNCC	2 cut(s)	252, 351
PspPI	GGNCC	2 cut(s)	250, 865
PspPPI	RGGWCCY	1 cut(s)	865
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	2 cut(s)	304, 617
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
RseI	CAYNNNNRTG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	6 cut(s)	305, 308, 458, 573, 585, 622
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	250, 865
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	4 cut(s)	13, 299, 383, 818
SexAI	ACCWGGT	2 cut(s)	297, 381
SfcI	CTRYAG	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	393
SinI	GGWCC	2 cut(s)	250, 865
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	2 cut(s)	393, 579
SmoI	CTYRAG	2 cut(s)	393, 579
Sse9I	AATT	6 cut(s)	7, 73, 185, 216, 388, 716
SsiI	CCGC	2 cut(s)	170, 621
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	4 cut(s)	11, 297, 381, 816
TaaI	ACNGT	2 cut(s)	603, 766
TaqI	TCGA	3 cut(s)	5, 394, 760
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	6 cut(s)	7, 73, 185, 216, 388, 716
TauI	GCSGC	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	429
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	5 cut(s)	304, 307, 457, 572, 584
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	269, 581
TspGWI	ACGGA	2 cut(s)	237, 437
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	250, 865
XapI	RAATTY	3 cut(s)	7, 388, 716
XhoI	CTCGAG	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.