Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001551

Physical Location & Seq

Genomic Coordinates Reverse (-)

28689766 .. 28691659

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGTAAAGCAAAAGGTCTGTGTTACTGGTGCAGGAGGGTTTATTGCTTCATGGCTCGTCAAGTTTCTTCTCTCTCGTGGCTACACTGTCCATGGAACCGTTCGAGATCCTTGTGATGAAAAGAATGACCATTTGAGGAAACTGGATAATGCTTCAAAAAATCTGAAACTTTTCAAGGCAGATTTGTTTGATGATGAAGGTCTTTTCTCAGCCATTGATGGTTGCTCTGGCGTTTTCCATATCGCTTCTCCTGTGCCTTTTGAAGGAGTTCCTCTCACAGAGGAAGAACTGATTAAACCAGCTCTCACTGGCACCAAGAATGTTCTAGAAGCATGCACAGAAACCAAAGTGCAGAAAGTTGTGGTTGTATCATCAATCGCTGCAGTTGTTTACAATCCAAAATGGCCTCAAGATGTTGCTAAGGACGAGGATTGTTGGTCAGACACTCAATACCTTCACTCACTTGAGGGTTATTGGCGTTATTACTATCTTGCCAAAACATTAACGGAACGTGAAGCTTTAGAGTGGAGTAAGAGAAACTTTGCTGATGTTGTTACGCTCTGTCCGTCTGTCATTATAGGCCCTAGGCTTCAATCCACGCTTAACTCTAGTAGTTTGGGACTTCTCAAGTTCATAAAAGGTGGTATAAAGTCCTTGTTGAGCGATGAACTGTATCTTGTGGATGTGCGTGATGTTGCGGATGCGCTTTTGTTGGTGTATGAAAATCGAGAAGCAACAGGAAGATACATATGTAATTCTCATTCACTTTACACTGATTCTCTTATGGAGAAGCTCAAGAATATGTATCCTAAACGCAACTTCCCTGAAAGTTTCACGGAGGTAAAAGAGAAGGAAGTGAGGCCTCTAAGTGCAGAGAAGTTGAAAAACTTGGGGTGGAAGTTTAGGCCATTAGAAGAAACCATTGATGATTCTGTTGTGAGCTTTGAAGCAGCTGGTGATCTTCCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

325

Amino Acids

36.46

Weight (kDa)

5.7

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 137	2e-08	NmrA-like family
Epimerase	PF01370	7 - 246	1.2e-22	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	7 - 130	4.5e-08	Polysaccharide biosynthesis protein
KR	PF08659	8 - 134	9.5e-06	KR domain
3Beta_HSD	PF01073	9 - 204	1.4e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	9 - 126	8.2e-13	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	9 - 214	3.3e-10	Male sterility protein
NAD_binding_10	PF13460	11 - 177	2.6e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76470
fragaria_vesca	FvH4_5g26030 FvH4_5g26030 FvH4_5g26090
malus_domestica	MD06G1003300.v1.1 MD06G1003700.v1.1 MD06G1003800.v1.1 MD06G1003900.v1.1
prunus_persica	Prupe.5G004900_v2.0.a1 Prupe.5G005000_v2.0.a1
pyrus_communis	pycom06g00340 pycom06g00350 pycom06g00360 pycom06g00380
rosa_chinensis	RchiOBHm_Chr7g0216711 RchiOBHm_Chr7g0216751 RchiOBHm_Chr7g0216801
rosa_laevigata	RLG00000002541 RLG00000002544
rosa_multiflora	Rmu_co8327343.1_g000001 Rmu_sc0000125.1_g000013 Rmu_sc0003814.1_g000008 Rmu_sc0003814.1_g000009 Rmu_sc0004941.1_g000004 Rmu_ssc0000117.1_g000016 Rmu_ssc0000117.1_g000017 Rmu_ssc0000375.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242850 Rroxscaffold_3G00242960 Rroxscaffold_3G00242980 Rroxscaffold_5G00345210 Rroxscaffold_7G00166270
rosa_rugosa	Rorug07G0161900 Rorug07G0162100
rosa_samantha	Rh7AG301800 Rh7AG302000 Rh7AG302900 Rh7BG293600 Rh7BG293800 Rh7BG294600 Rh7CG320500 Rh7CG320800 Rh7CG321500 Rh7DG302500 Rh7DG302900 Rh7DG303100 Rh7DG303200
rosa_wichuraiana	Rw0G009080 Rw7G025620 Rw7G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	6 cut(s)	159, 178, 266, 596, 886, 950
AluBI	AGCT	5 cut(s)	305, 521, 796, 945, 956
AluI	AGCT	5 cut(s)	305, 521, 796, 945, 956
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	4 cut(s)	407, 583, 863, 908
ApeKI	GCWGC	2 cut(s)	383, 953
Asp700I	GAANNNNTTC	2 cut(s)	173, 270
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	971
AvrII	CCTAGG	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BanI	GGYRCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	370, 965
BccI	CCATC	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	819
BfaI	CTAG	3 cut(s)	329, 588, 612
BfmI	CTRYAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	2 cut(s)	384, 954
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	2 cut(s)	385, 955
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	100, 316
BmsI	GCATC	1 cut(s)	694
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	4 cut(s)	396, 488, 614, 782
BsaJI	CCNNGG	2 cut(s)	94, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	34, 150, 316
BseDI	CCNNGG	2 cut(s)	94, 587
BseGI	GGATG	2 cut(s)	691, 709
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	34, 150, 316
BseXI	GCAGC	2 cut(s)	370, 965
BsgI	GTGCAG	3 cut(s)	54, 374, 894
BshFI	GGCC	4 cut(s)	409, 585, 865, 910
BshNI	GGYRCC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	4 cut(s)	409, 585, 865, 910
Bsp143I	GATC	2 cut(s)	109, 961
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	4 cut(s)	409, 585, 865, 910
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	100, 316
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	34, 150, 316
BssECI	CCNNGG	2 cut(s)	94, 587
BssMI	GATC	2 cut(s)	109, 961
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	2 cut(s)	94, 587
Bst2BI	CACGAG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	91, 103, 675
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	211, 423, 869
BstDSI	CCRYGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	691, 709
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	2 cut(s)	112, 964
BstMBI	GATC	2 cut(s)	109, 961
BstNSI	RCATGY	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	370, 965
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	409, 585, 865, 910
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	691, 709
BtsIMutI	CAGTG	3 cut(s)	87, 309, 774
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	584
CviAII	CATG	3 cut(s)	54, 95, 336
DdeI	CTNAG	3 cut(s)	211, 423, 869
DpnI	GATC	2 cut(s)	111, 963
DpnII	GATC	2 cut(s)	109, 961
Eco130I	CCWWGG	2 cut(s)	94, 587
Eco147I	AGGCCT	1 cut(s)	865
EcoNI	CCTNNNNNAGG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	584
EcoT14I	CCWWGG	2 cut(s)	94, 587
ErhI	CCWWGG	2 cut(s)	94, 587
FaeI	CATG	3 cut(s)	57, 98, 339
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	3 cut(s)	53, 94, 335
FauNDI	CATATG	1 cut(s)	752
Fnu4HI	GCNGC	2 cut(s)	384, 954
FokI	GGATG	2 cut(s)	698, 716
Fsp4HI	GCNGC	2 cut(s)	384, 954
FspBI	CTAG	3 cut(s)	329, 588, 612
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	2 cut(s)	384, 954
HaeIII	GGCC	4 cut(s)	409, 585, 865, 910
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	57, 98, 339
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	779, 932
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	168, 445
Hpy188III	TCNNGA	5 cut(s)	107, 329, 413, 731, 799
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	4 cut(s)	194, 260, 467, 847
HpyCH4III	ACNGT	3 cut(s)	91, 103, 675
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	35, 339, 355, 386, 875
HpyF3I	CTNAG	3 cut(s)	211, 423, 869
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	57, 98, 339
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	2 cut(s)	109, 961
Lsp1109I	GCAGC	2 cut(s)	370, 965
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	3 cut(s)	329, 588, 612
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	25, 556
MalI	GATC	2 cut(s)	111, 963
MboI	GATC	2 cut(s)	109, 961
MboII	GAAGA	5 cut(s)	62, 299, 756, 929, 956
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	757
MroXI	GAANNNNTTC	2 cut(s)	173, 270
MseI	TTAA	3 cut(s)	297, 506, 606
MspA1I	CMGCKG	1 cut(s)	956
NcoI	CCATGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	2 cut(s)	109, 961
NlaIII	CATG	3 cut(s)	57, 98, 339
NlaIV	GGNNCC	2 cut(s)	100, 316
NspI	RCATGY	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	865
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PdmI	GAANNNNTTC	2 cut(s)	173, 270
PfeI	GAWTC	2 cut(s)	779, 932
PkrI	GCNGC	2 cut(s)	385, 955
PspN4I	GGNNCC	2 cut(s)	100, 316
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	956
SaqAI	TTAA	3 cut(s)	297, 506, 606
SatI	GCNGC	2 cut(s)	384, 954
Sau3AI	GATC	2 cut(s)	109, 961
Sau96I	GGNCC	1 cut(s)	584
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	4 cut(s)	411, 467, 629, 797
SmoI	CTYRAG	4 cut(s)	411, 467, 629, 797
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	1 cut(s)	757
SseBI	AGGCCT	1 cut(s)	865
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	3 cut(s)	329, 588, 612
StuI	AGGCCT	1 cut(s)	865
StyI	CCWWGG	2 cut(s)	94, 587
TaaI	ACNGT	3 cut(s)	91, 103, 675
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	106, 730
TasI	AATT	1 cut(s)	757
TfiI	GAWTC	2 cut(s)	779, 932
Tru1I	TTAA	3 cut(s)	297, 506, 606
Tru9I	TTAA	3 cut(s)	297, 506, 606
TscAI	CASTG	3 cut(s)	94, 316, 781
TseI	GCWGC	2 cut(s)	383, 953
TspDTI	ATGAA	6 cut(s)	42, 135, 213, 625, 684, 738
TspGWI	ACGGA	3 cut(s)	524, 558, 854
TspRI	CASTG	3 cut(s)	94, 316, 781
XagI	CCTNNNNNAGG	1 cut(s)	264
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	1 cut(s)	339
XmaJI	CCTAGG	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	173, 270
XspI	CTAG	3 cut(s)	329, 588, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.