Rh7DG303100

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001551
Physical Location & Seq
Reverse (-)
34963732 .. 34964138
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG303100.1

Sequence Viewer

Length: 261 bp
ATGGGGCCACTGTTGCAATGCACTCTGAATACTAGTAGCTGCCTCCTGCCTATGGGATTCAAAGGCGGGTTTGAGAAGGTGGGCTACAATTACTGGACGGTGGTGGATGCTCGTGATTTAGCTGATGCACTGCTTCTTGTATACAAGAAATCTGAGGCTGGAGAAAGATACATATGCACAGCACATGCAATTGGGGTAGAAGAAGTAGTGGAGAAGTACTTGAAGATTTCACATCCCAACTACAACTATTCTCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

5.62

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 66
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 61, 223
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 2 cut(s) 39, 122
AluI AGCT 2 cut(s) 39, 122
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmcAI AGTACT 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 97, 115
BpmI CTGGAG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 23
BseGI GGATG 2 cut(s) 112, 232
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 254
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 1 cut(s) 98
BssNAI GTATAC 1 cut(s) 142
BssSI CACGAG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 12, 100
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 112, 232
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 112, 232
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 8, 128
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 7, 39, 84, 122, 158
CviKI_1 RGCY 5 cut(s) 7, 39, 84, 122, 158
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 254
FaeI CATG 1 cut(s) 188
FaiI YATR 5 cut(s) 53, 142, 173, 175, 186
FatI CATG 1 cut(s) 184
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 1 cut(s) 173
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 119, 219
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 1 cut(s) 188
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 27, 154
Hpy188III TCNNGA 2 cut(s) 113, 254
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 12, 100
HpyCH4V TGCA 5 cut(s) 16, 21, 128, 177, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 188
LpnPI CCDG 3 cut(s) 59, 79, 144
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 97, 115
MaeI CTAG 1 cut(s) 33
MboII GAAGA 2 cut(s) 212, 235
MfeI CAATTG 1 cut(s) 189
MluCI AATT 2 cut(s) 88, 189
MnlI CCTC 2 cut(s) 53, 148
MunI CAATTG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 173
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 188
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 218
SetI ASST 3 cut(s) 41, 81, 124
SfaNI GCATC 2 cut(s) 97, 115
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 2 cut(s) 88, 189
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 12, 100
TasI AATT 2 cut(s) 88, 189
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 57
TscAI CASTG 2 cut(s) 15, 135
TseI GCWGC 1 cut(s) 39
TspRI CASTG 2 cut(s) 15, 135
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 33
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.